Wall clock time and date at job start Mon Mar 30 2020 03:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.82869 * 2 1 4 4 H 1.08001 * 119.99918 * 245.23245 * 3 2 1 5 5 C 1.37877 * 120.00208 * 65.22521 * 3 2 1 6 6 N 1.31519 * 119.99905 * 5.39081 * 5 3 2 7 7 Si 1.86799 * 120.00125 * 185.38854 * 5 3 2 8 8 H 1.48497 * 109.46932 * 60.00056 * 7 5 3 9 9 H 1.48496 * 109.47374 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47367 * 300.00336 * 7 5 3 11 11 C 1.54426 * 109.91574 * 239.04647 * 2 1 3 12 12 C 1.55406 * 102.32204 * 219.07542 * 11 2 1 13 13 C 1.54374 * 100.87068 * 33.55228 * 12 11 2 14 14 C 1.52605 * 110.00508 * 84.09869 * 13 12 11 15 15 N 1.47111 * 108.97604 * 121.18521 * 14 13 12 16 16 C 1.46949 * 110.94506 * 297.92172 * 15 14 13 17 17 C 1.53111 * 109.55181 * 62.05712 * 16 15 14 18 18 C 1.52922 * 109.82576 * 204.89391 * 13 12 11 19 19 C 1.53556 * 108.43777 * 180.10023 * 18 13 12 20 20 C 1.46944 * 110.98046 * 61.69391 * 15 14 13 21 21 O 1.43006 * 105.89101 * 324.31946 * 13 12 11 22 22 H 1.08995 * 109.47199 * 54.70499 * 1 2 3 23 23 H 1.09002 * 109.47235 * 174.70668 * 1 2 3 24 24 H 1.09000 * 109.46937 * 294.70057 * 1 2 3 25 25 H 0.96997 * 120.00081 * 2.96948 * 6 5 3 26 26 H 1.09002 * 110.83996 * 337.28423 * 11 2 1 27 27 H 1.09004 * 110.83653 * 100.86892 * 11 2 1 28 28 H 1.08999 * 111.13681 * 275.65337 * 12 11 2 29 29 H 1.08997 * 111.17627 * 151.46768 * 12 11 2 30 30 H 1.09001 * 109.55632 * 241.03262 * 14 13 12 31 31 H 1.09000 * 109.55308 * 1.33981 * 14 13 12 32 32 H 1.08996 * 109.45576 * 182.08686 * 16 15 14 33 33 H 1.09002 * 109.45695 * 302.03219 * 16 15 14 34 34 H 1.08992 * 109.58072 * 240.06711 * 17 16 15 35 35 H 1.09002 * 109.67940 * 119.74065 * 17 16 15 36 36 H 1.08999 * 110.25321 * 59.30399 * 18 13 12 37 37 H 1.09005 * 109.57764 * 298.41706 * 19 18 13 38 38 H 1.09001 * 109.69326 * 178.07798 * 19 18 13 39 39 H 1.09003 * 109.45060 * 57.80230 * 20 15 14 40 40 H 1.09000 * 109.45157 * 177.75289 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4176 0.0000 4 1 2.5930 1.7927 -0.8493 5 6 1.8043 2.2359 1.0841 6 7 1.2262 1.7500 2.1609 7 14 2.3047 4.0346 1.0237 8 1 1.5975 4.7078 -0.0951 9 1 1.9437 4.6922 2.3052 10 1 3.7713 4.1336 0.8131 11 6 2.0560 -0.7468 -1.2451 12 6 3.2772 -1.5214 -0.6760 13 6 2.7857 -1.8291 0.7547 14 6 1.9276 -3.0910 0.7519 15 7 2.5331 -4.0833 1.6534 16 6 3.8739 -4.4656 1.1892 17 6 4.7880 -3.2373 1.1957 18 6 3.9843 -2.0238 1.6842 19 6 3.4603 -2.3299 3.0948 20 6 2.5797 -3.5809 3.0336 21 8 2.0165 -0.6927 1.1574 22 1 -0.3633 0.5937 -0.8387 23 1 -0.3634 -1.0233 -0.0948 24 1 -0.3633 0.4294 0.9336 25 1 1.0054 0.8067 2.2091 26 1 1.3046 -1.4363 -1.6300 27 1 2.3687 -0.0426 -2.0162 28 1 4.1679 -0.8933 -0.6590 29 1 3.4569 -2.4392 -1.2357 30 1 0.9224 -2.8495 1.0976 31 1 1.8797 -3.4973 -0.2584 32 1 4.2842 -5.2272 1.8523 33 1 3.8078 -4.8637 0.1766 34 1 5.1553 -3.0500 0.1868 35 1 5.6308 -3.4105 1.8649 36 1 4.6013 -1.1254 1.6976 37 1 2.8723 -1.4866 3.4570 38 1 4.2992 -2.5064 3.7680 39 1 1.5711 -3.3315 3.3632 40 1 2.9951 -4.3493 3.6857 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686238275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:49 Heat of formation + Delta-G solvation = -64.501822 kcal Electronic energy + Delta-G solvation = -20702.273966 eV Core-core repulsion = 17901.455470 eV Total energy + Delta-G solvation = -2800.818497 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.21267 -39.34076 -35.07733 -33.18268 -33.14008 -31.91373 -31.53726 -29.00712 -26.87192 -24.67922 -24.04999 -23.77143 -22.13696 -21.47964 -19.20164 -18.42002 -17.60788 -17.32783 -16.59427 -15.89776 -15.67348 -15.42012 -14.72420 -14.29482 -14.13267 -13.97162 -13.89602 -13.75531 -13.13967 -13.04232 -12.98801 -12.91575 -12.55294 -12.53568 -12.43461 -12.26053 -12.04567 -11.89314 -11.70450 -11.59352 -11.23981 -10.97096 -10.75067 -10.50429 -9.96591 -9.03261 -8.43406 -6.25754 1.49773 1.57047 1.75880 2.58815 3.02537 3.05781 3.39825 3.63167 3.79990 3.96306 3.98059 4.03550 4.22864 4.25018 4.31370 4.34952 4.38344 4.44920 4.58655 4.67095 4.73063 4.82662 4.86076 4.91198 4.95550 4.95733 5.00303 5.03419 5.14104 5.15262 5.17324 5.30026 5.36870 5.43970 5.68325 6.04402 6.11505 6.16864 6.27468 6.76168 6.91854 7.67422 8.94774 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.008244 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.626156 B = 3395.537855 C = 3578.758058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.199 3.801 3 C -0.623 4.623 4 H 0.040 0.960 5 C -0.013 4.013 6 N -0.923 5.923 7 Si 1.102 2.898 8 H -0.271 1.271 9 H -0.287 1.287 10 H -0.278 1.278 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.075 3.925 14 C 0.052 3.948 15 N -0.527 5.527 16 C 0.053 3.947 17 C -0.137 4.137 18 C -0.083 4.083 19 C -0.140 4.140 20 C 0.060 3.940 21 O -0.385 6.385 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.277 0.723 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.706 -12.440 -2.986 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 C -0.661 4.661 4 H 0.059 0.941 5 C -0.216 4.216 6 N -0.561 5.561 7 Si 0.926 3.074 8 H -0.196 1.196 9 H -0.213 1.213 10 H -0.204 1.204 11 C -0.168 4.168 12 C -0.161 4.161 13 C 0.034 3.966 14 C -0.076 4.076 15 N -0.248 5.248 16 C -0.075 4.075 17 C -0.176 4.176 18 C -0.102 4.102 19 C -0.180 4.180 20 C -0.068 4.068 21 O -0.305 6.305 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.293 -11.446 -1.928 12.757 hybrid contribution 0.341 0.026 -0.846 0.913 sum 5.634 -11.420 -2.774 13.032 Atomic orbital electron populations 1.21979 0.97994 0.98827 1.00220 1.19931 0.90432 0.90774 0.82738 1.22444 1.40548 0.97828 1.05257 0.94123 1.26905 0.93708 1.08759 0.92180 1.70744 1.38624 1.17966 1.28717 0.83140 0.76586 0.71450 0.76221 1.19591 1.21273 1.20392 1.23039 0.97440 0.98332 0.98014 1.23069 0.97522 1.00084 0.95449 1.22579 0.91723 0.88543 0.93755 1.22623 0.97339 0.89901 0.97785 1.62726 1.21571 1.38420 1.02076 1.22333 0.86618 0.96186 1.02407 1.22256 0.98755 0.94337 1.02258 1.21171 0.95570 0.98222 0.95254 1.22109 1.00166 0.98989 0.96687 1.22131 0.99205 0.95063 0.90436 1.88508 1.69262 1.39739 1.32961 0.93216 0.93830 0.95237 0.91016 0.90957 0.92001 0.92829 0.88571 0.92403 0.89181 0.88623 0.89418 0.90954 0.90099 0.93405 0.94904 0.90614 0.92455 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.47 71.98 0.61 -5.76 16 2 C 0.20 9.88 0.79 -11.06 -0.01 9.87 16 3 C -0.62 -35.36 8.21 25.60 0.21 -35.15 16 4 H 0.04 2.30 7.46 -2.91 -0.02 2.28 16 5 C -0.01 -0.75 5.25 84.65 0.44 -0.31 16 6 N -0.92 -57.65 12.92 21.45 0.28 -57.37 16 7 Si 1.10 51.80 29.91 68.60 2.05 53.85 16 8 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 C -0.13 -5.26 5.90 31.91 0.19 -5.07 16 12 C -0.12 -4.42 4.79 31.89 0.15 -4.26 16 13 C 0.08 2.89 0.56 -10.48 -0.01 2.88 16 14 C 0.05 1.74 5.42 86.13 0.47 2.20 16 15 N -0.53 -14.94 5.24 -895.75 -4.70 -19.63 16 16 C 0.05 1.17 6.08 86.33 0.52 1.69 16 17 C -0.14 -3.42 5.52 30.81 0.17 -3.25 16 18 C -0.08 -2.91 2.70 -10.45 -0.03 -2.94 16 19 C -0.14 -4.79 5.62 30.82 0.17 -4.62 16 20 C 0.06 1.77 6.07 86.33 0.52 2.29 16 21 O -0.38 -19.29 7.45 -148.98 -1.11 -20.40 16 22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.04 1.83 8.05 -2.39 -0.02 1.81 16 24 H 0.03 1.57 6.30 -2.39 -0.02 1.55 16 25 H 0.28 17.57 4.86 -92.71 -0.45 17.12 16 26 H 0.07 2.56 7.79 -2.39 -0.02 2.54 16 27 H 0.06 2.53 7.59 -2.39 -0.02 2.51 16 28 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 29 H 0.10 2.71 7.55 -2.39 -0.02 2.69 16 30 H 0.06 2.20 7.94 -2.39 -0.02 2.18 16 31 H 0.09 2.64 7.36 -2.39 -0.02 2.62 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.71 7.21 -2.39 -0.02 1.69 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.03 1.39 7.82 -2.38 -0.02 1.37 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -66.80 295.30 1.26 -65.54 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 1.31 Total: 20.43 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 3.42 Total: -42.42 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -4.42 Total: -77.01 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.11 Total: -20.40 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -66.80 1.26 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686238275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.043 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds