Wall clock time and date at job start Mon Mar 30 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47157 * 2 1 4 4 C 1.52997 * 109.47536 * 239.99581 * 2 1 3 5 5 C 1.50699 * 109.47196 * 174.99939 * 4 2 1 6 6 H 1.07995 * 120.00291 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00066 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47124 * 90.00321 * 9 7 5 11 11 H 1.48504 * 109.47124 * 210.00046 * 9 7 5 12 12 H 1.48499 * 109.46984 * 329.99925 * 9 7 5 13 13 N 1.46900 * 109.46892 * 119.99406 * 2 1 3 14 14 C 1.46896 * 111.00713 * 275.00181 * 13 2 1 15 15 C 1.52992 * 109.47500 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47482 * 300.00262 * 15 14 13 17 17 C 1.52999 * 109.46961 * 60.00622 * 15 14 13 18 18 N 1.46506 * 109.46999 * 179.97438 * 15 14 13 19 19 C 1.36885 * 126.39213 * 180.02562 * 18 15 14 20 20 C 1.34675 * 106.81111 * 180.02562 * 19 18 15 21 21 N 1.34126 * 108.02267 * 0.02562 * 20 19 18 22 22 C 1.30497 * 109.25647 * 359.72688 * 21 20 19 23 23 H 1.09003 * 109.46527 * 60.00274 * 1 2 3 24 24 H 1.09002 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47596 * 300.00645 * 1 2 3 26 26 H 1.08997 * 109.47473 * 295.00239 * 4 2 1 27 27 H 1.09004 * 109.47011 * 55.00192 * 4 2 1 28 28 H 0.97000 * 120.00087 * 180.02562 * 8 7 5 29 29 H 1.00904 * 110.99757 * 38.95788 * 13 2 1 30 30 H 1.09001 * 109.46885 * 59.99661 * 14 13 2 31 31 H 1.08996 * 109.46969 * 300.00582 * 14 13 2 32 32 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 33 33 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 34 34 H 1.09004 * 109.47261 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46716 * 299.99630 * 17 15 14 36 36 H 1.09000 * 109.47486 * 59.99547 * 17 15 14 37 37 H 1.09001 * 109.47362 * 180.02562 * 17 15 14 38 38 H 1.07995 * 126.59767 * 359.96787 * 19 18 15 39 39 H 1.08001 * 125.98844 * 179.97438 * 20 19 18 40 40 H 1.07999 * 125.65544 * 180.29499 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3125 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1927 -2.3581 8 7 3.5765 -1.8362 -3.3003 9 14 6.0923 -1.0614 -2.4363 10 1 6.7001 -2.2147 -1.7252 11 1 6.5298 -1.0685 -3.8554 12 1 6.5269 0.2033 -1.7907 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2227 2.3470 15 6 2.5949 -0.5330 3.5745 16 6 1.6451 -1.6888 3.8953 17 6 3.9920 -1.0860 3.2864 18 7 2.6580 0.3798 4.7187 19 6 3.0682 0.0660 5.9864 20 6 2.9687 1.1923 6.7180 21 7 2.5098 2.1669 5.9190 22 6 2.3266 1.6889 4.7186 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8898 26 1 1.7518 -1.7715 -1.2055 27 1 1.6055 -0.2618 -2.1369 28 1 4.0609 -2.2430 -4.0357 29 1 1.4495 -1.4978 1.4101 30 1 1.0870 0.6164 2.5525 31 1 2.7587 1.0462 2.1183 32 1 1.5985 -2.3678 3.0439 33 1 0.6497 -1.2947 4.1006 34 1 2.0105 -2.2274 4.7697 35 1 3.9455 -1.7651 2.4350 36 1 4.6688 -0.2627 3.0578 37 1 4.3570 -1.6248 4.1608 38 1 3.4058 -0.8994 6.3334 39 1 3.2145 1.2928 7.7649 40 1 1.9675 2.2472 3.8667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692622607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:20 Heat of formation + Delta-G solvation = 52.780210 kcal Electronic energy + Delta-G solvation = -18951.656289 eV Core-core repulsion = 16188.216274 eV Total energy + Delta-G solvation = -2763.440015 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.11351 -38.03990 -35.58402 -32.66101 -31.17687 -29.75260 -29.19925 -27.47280 -27.28818 -25.20995 -23.07454 -22.20283 -20.82679 -19.96229 -19.49539 -17.07705 -16.25859 -15.49266 -15.11227 -14.60048 -14.42523 -14.35240 -13.94815 -13.84046 -13.31336 -13.20854 -12.90957 -12.55147 -12.18351 -12.03349 -11.84991 -11.72567 -11.55068 -11.27452 -11.21691 -10.87444 -10.65770 -10.47031 -10.13425 -9.91134 -9.52364 -9.37505 -9.04890 -8.46614 -8.30747 -7.78876 -5.93073 -3.91134 2.15058 2.78532 3.24028 3.35240 3.41855 3.45061 4.30328 4.51827 4.65321 4.74647 4.80816 4.87214 4.93260 5.40463 5.43473 5.44407 5.49203 5.59252 5.62615 5.71076 5.74101 5.81521 5.82572 5.88818 5.91015 6.04341 6.32433 6.37519 6.42966 6.52077 6.79742 6.90641 7.25776 7.39589 7.57800 7.87443 7.91779 8.07492 8.14516 8.52876 9.14069 9.70649 11.18935 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.005465 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.869763 B = 5121.981653 C = 5674.131155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.066 0.934 4 C 0.034 3.966 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.655 5.655 14 C 0.058 3.942 15 C 0.157 3.843 16 C -0.157 4.157 17 C -0.145 4.145 18 N -0.442 5.442 19 C -0.052 4.052 20 C -0.039 4.039 21 N -0.502 5.502 22 C 0.180 3.820 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.333 0.667 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 0.900 14.923 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.287 5.287 14 C -0.072 4.072 15 C 0.073 3.927 16 C -0.215 4.215 17 C -0.203 4.203 18 N -0.125 5.125 19 C -0.186 4.186 20 C -0.187 4.187 21 N -0.220 5.220 22 C -0.103 4.103 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.185 0.815 39 H 0.182 0.818 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.471 1.597 14.691 15.180 hybrid contribution 0.257 -0.765 -0.131 0.818 sum -3.214 0.832 14.560 14.933 Atomic orbital electron populations 1.22558 0.99314 1.01302 1.00810 1.21820 0.89993 0.98280 0.91790 0.91572 1.19108 0.96299 0.95371 0.89582 1.21114 0.91790 1.33036 1.06867 0.92398 1.24994 0.97923 0.95903 0.96003 1.69956 1.35196 1.36901 1.12333 0.86659 0.86500 0.78287 0.76864 1.20912 1.21578 1.20112 1.60585 1.58019 1.08249 1.01847 1.22143 0.99034 0.96165 0.89863 1.20938 0.98482 0.89347 0.83910 1.22193 0.98667 0.97497 1.03094 1.22070 0.93114 1.02318 1.02772 1.45885 1.47165 1.10113 1.09292 1.22573 1.09417 1.01642 0.84998 1.22234 1.06934 0.89468 1.00056 1.70283 1.18745 1.31759 1.01220 1.24908 1.04756 0.82631 0.97992 0.92232 0.92961 0.94419 0.96467 0.96322 0.93292 0.84830 0.95223 0.90201 0.89592 0.92236 0.91837 0.88251 0.91976 0.93018 0.81472 0.81790 0.78379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.16 37.16 0.34 -2.43 16 2 C 0.09 1.65 2.53 -67.71 -0.17 1.48 16 3 H 0.07 1.25 7.80 -51.93 -0.40 0.85 16 4 C 0.03 0.81 4.65 -27.89 -0.13 0.68 16 5 C -0.49 -13.14 8.84 -34.44 -0.30 -13.44 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.66 -10.49 5.17 -106.73 -0.55 -11.04 16 14 C 0.06 0.78 3.33 -3.83 -0.01 0.77 16 15 C 0.16 1.88 1.04 -131.82 -0.14 1.74 16 16 C -0.16 -1.62 8.20 37.16 0.30 -1.32 16 17 C -0.15 -1.87 8.37 37.16 0.31 -1.56 16 18 N -0.44 -5.49 2.61 -104.64 -0.27 -5.76 16 19 C -0.05 -0.61 10.61 -16.56 -0.18 -0.78 16 20 C -0.04 -0.49 11.87 -17.81 -0.21 -0.70 16 21 N -0.50 -7.49 11.25 -14.66 -0.16 -7.65 16 22 C 0.18 2.41 11.50 -90.38 -1.04 1.38 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.33 4.89 6.51 -39.29 -0.26 4.64 16 30 H 0.03 0.37 7.17 -51.93 -0.37 0.00 16 31 H 0.08 1.16 7.77 -51.93 -0.40 0.75 16 32 H 0.09 0.89 6.57 -51.93 -0.34 0.54 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.10 1.43 7.60 -51.93 -0.39 1.04 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.58 7.95 -51.93 -0.41 0.16 16 38 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.20 2.27 7.15 -52.49 -0.38 1.90 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -30.49 323.68 -8.40 -38.89 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.68 Total: 2.89 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.32 Total: -12.85 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.25 Total: -50.35 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.49 -8.40 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692622607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.671 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds