Wall clock time and date at job start Mon Mar 30 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 N 1.46901 * 109.46769 * 174.99873 * 4 2 1 6 6 C 1.46906 * 110.99793 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47183 * 180.02562 * 6 5 4 8 8 C 1.39867 * 126.04206 * 90.02160 * 7 6 5 9 9 N 1.30835 * 108.20326 * 179.97438 * 8 7 6 10 10 N 1.40087 * 108.20780 * 359.97438 * 9 8 7 11 11 C 1.46501 * 126.03943 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.46936 * 305.02591 * 11 10 9 13 13 C 1.50699 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99460 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00480 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99655 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00081 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.46952 * 90.00212 * 17 15 13 19 19 H 1.48503 * 109.46756 * 209.99537 * 17 15 13 20 20 H 1.48492 * 109.46891 * 329.99716 * 17 15 13 21 21 C 1.34951 * 107.92162 * 359.76274 * 10 9 8 22 22 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 23 23 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 24 24 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 26 26 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 27 27 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 28 28 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.00898 * 110.99877 * 56.04956 * 5 4 2 32 32 H 1.08995 * 109.47087 * 299.99901 * 6 5 4 33 33 H 1.09002 * 109.46903 * 59.99922 * 6 5 4 34 34 H 1.08005 * 125.89978 * 359.96316 * 8 7 6 35 35 H 1.08997 * 109.47101 * 65.02577 * 11 10 9 36 36 H 1.08994 * 109.47083 * 185.02768 * 11 10 9 37 37 H 1.08999 * 109.47690 * 300.00107 * 12 11 10 38 38 H 1.09007 * 109.47168 * 59.99972 * 12 11 10 39 39 H 0.97005 * 119.99668 * 180.02562 * 16 15 13 40 40 H 1.07997 * 126.12594 * 180.23775 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.0302 -1.5158 2.3763 7 6 5.5316 -1.6043 2.2810 8 6 6.4439 -0.6610 2.7647 9 7 7.6520 -1.0858 2.4965 10 7 7.5464 -2.3152 1.8331 11 6 8.6623 -3.1348 1.3543 12 6 9.5547 -2.2958 0.4376 13 6 10.7030 -3.1387 -0.0545 14 1 10.7879 -4.1696 0.2560 15 6 11.6456 -2.5935 -0.9001 16 7 11.5424 -1.3380 -1.2778 17 14 13.0685 -3.6386 -1.5106 18 1 12.6819 -4.3096 -2.7776 19 1 14.2513 -2.7732 -1.7498 20 1 13.4033 -4.6637 -0.4897 21 6 6.2354 -2.6138 1.7182 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8898 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.7515 -0.1582 2.1370 30 1 1.6053 -1.7197 1.2953 31 1 3.9279 0.0826 1.0824 32 1 3.7557 -0.9587 3.2720 33 1 3.6093 -2.5198 2.4297 34 1 6.1944 0.2594 3.2718 35 1 9.2451 -3.4877 2.2051 36 1 8.2739 -3.9894 0.8004 37 1 8.9720 -1.9428 -0.4132 38 1 9.9432 -1.4411 0.9916 39 1 12.2055 -0.9545 -1.8731 40 1 5.8219 -3.4985 1.2571 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693502053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:49 Heat of formation + Delta-G solvation = 51.535400 kcal Electronic energy + Delta-G solvation = -17679.938444 eV Core-core repulsion = 14916.444450 eV Total energy + Delta-G solvation = -2763.493994 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68829 -37.52136 -34.64147 -33.76833 -32.18979 -30.04023 -29.21492 -27.37694 -26.13794 -24.74148 -23.19559 -21.89459 -20.34400 -20.05038 -19.39133 -16.80685 -16.28846 -15.69689 -15.13857 -14.76345 -14.59463 -14.24969 -14.12852 -13.65215 -13.16403 -12.96384 -12.75953 -12.57203 -12.43055 -12.22847 -11.99368 -11.72372 -11.39700 -11.10190 -10.99806 -10.90380 -10.78459 -10.71008 -10.26989 -9.98623 -9.75703 -9.29574 -8.81230 -8.43864 -8.40296 -7.87637 -6.07739 -4.13266 2.46847 3.14126 3.19695 3.28088 3.34806 3.37746 4.36784 4.39703 4.73150 4.77642 4.92606 5.04401 5.25988 5.28239 5.33906 5.42394 5.44330 5.54141 5.56214 5.64530 5.67193 5.73837 5.79688 5.85288 5.93783 6.12723 6.13775 6.19911 6.29656 6.49006 6.56151 7.03347 7.15870 7.43510 7.48000 7.60524 7.69459 7.93731 8.22511 8.30163 8.92941 9.51284 11.03390 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.029665 B = 0.003472 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.632796 B = 8061.938969 C = 8503.513611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.151 4.151 4 C 0.063 3.937 5 N -0.688 5.688 6 C 0.146 3.854 7 C -0.259 4.259 8 C 0.032 3.968 9 N -0.283 5.283 10 N -0.348 5.348 11 C 0.130 3.870 12 C 0.017 3.983 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.072 3.928 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.342 0.658 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.021 0.979 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 1.170 5.412 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.066 4.066 5 N -0.321 5.321 6 C 0.017 3.983 7 C -0.272 4.272 8 C -0.154 4.154 9 N -0.105 5.105 10 N -0.129 5.129 11 C 0.011 3.989 12 C -0.021 4.021 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.078 4.078 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.188 0.812 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.532 0.885 4.969 19.207 hybrid contribution -0.165 0.034 0.128 0.212 sum -18.697 0.919 5.097 19.401 Atomic orbital electron populations 1.21807 0.95265 1.01661 1.01619 1.21138 0.95154 0.96278 0.99063 1.21875 1.01524 0.95935 1.01482 1.22008 0.88670 0.99832 0.96120 1.60579 1.04301 1.26102 1.41071 1.19986 0.89608 0.98557 0.90150 1.19729 0.95306 0.98393 1.13744 1.23621 0.90236 0.99954 1.01569 1.77415 1.21912 0.96393 1.14787 1.49189 1.05752 1.15797 1.42142 1.22274 0.85317 0.92590 0.98754 1.19340 0.93363 0.95667 0.93715 1.21028 1.08886 0.97627 1.29277 0.92337 1.25004 0.98082 0.94997 0.96081 1.69988 1.35702 1.12665 1.34268 0.86513 0.81752 0.80100 0.79166 1.20544 1.21096 1.19767 1.22293 0.84611 1.00484 1.00406 0.92934 0.92625 0.92686 0.90214 0.92682 0.93094 0.92151 0.95662 0.91280 0.83833 0.95153 0.91125 0.81235 0.90800 0.89782 0.96086 0.94841 0.92760 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.71 16 2 C -0.10 -0.86 3.13 -90.62 -0.28 -1.14 16 3 C -0.15 -1.29 8.97 37.16 0.33 -0.96 16 4 C 0.06 0.59 5.14 -3.82 -0.02 0.57 16 5 N -0.69 -7.99 6.49 -115.05 -0.75 -8.74 16 6 C 0.15 1.73 6.17 -4.97 -0.03 1.70 16 7 C -0.26 -3.90 5.61 -105.05 -0.59 -4.49 16 8 C 0.03 0.53 11.96 -17.37 -0.21 0.32 16 9 N -0.28 -5.82 12.42 30.62 0.38 -5.44 16 10 N -0.35 -6.87 3.68 -61.37 -0.23 -7.10 16 11 C 0.13 2.70 6.45 -4.04 -0.03 2.67 16 12 C 0.02 0.44 5.16 -27.88 -0.14 0.30 16 13 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.07 1.18 11.36 -17.22 -0.20 0.98 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.57 6.68 -51.93 -0.35 0.22 16 29 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.34 4.06 6.97 -39.29 -0.27 3.78 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.17 2.24 8.06 -52.48 -0.42 1.81 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.55 8.07 -51.93 -0.42 1.13 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -31.31 334.17 -8.00 -39.30 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.92 Total: 0.86 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.23 Total: -14.16 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.14 Total: -47.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.31 -8.00 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693502053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.838 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds