Wall clock time and date at job start Mon Mar 30 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47501 * 2 1 4 4 H 1.08996 * 109.47241 * 183.82019 * 3 2 1 5 5 C 1.50701 * 109.47081 * 303.82462 * 3 2 1 6 6 H 1.07994 * 120.00128 * 115.62916 * 5 3 2 7 7 C 1.37876 * 119.99852 * 295.62202 * 5 3 2 8 8 N 1.31510 * 120.00123 * 353.80328 * 7 5 3 9 9 Si 1.86800 * 120.00014 * 173.80761 * 7 5 3 10 10 H 1.48498 * 109.47229 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46889 * 299.99877 * 9 7 5 12 12 H 1.48500 * 109.47171 * 59.99772 * 9 7 5 13 13 N 1.46906 * 109.46686 * 63.82136 * 3 2 1 14 14 C 1.46891 * 111.00106 * 80.89389 * 13 3 2 15 15 C 1.52994 * 109.47442 * 184.25490 * 14 13 3 16 16 C 1.53002 * 109.47362 * 300.00312 * 15 14 13 17 17 C 1.53009 * 109.47024 * 59.99838 * 15 14 13 18 18 N 1.46506 * 109.47673 * 179.97438 * 15 14 13 19 19 C 1.34942 * 126.04126 * 164.71523 * 18 15 14 20 20 C 1.35312 * 107.74897 * 179.83939 * 19 18 15 21 21 C 1.39868 * 107.91639 * 0.42948 * 20 19 18 22 22 N 1.30833 * 108.20332 * 359.73151 * 21 20 19 23 23 H 1.08998 * 109.47460 * 64.83677 * 1 2 3 24 24 H 1.08997 * 109.47169 * 184.84061 * 1 2 3 25 25 H 1.09003 * 109.46668 * 304.83782 * 1 2 3 26 26 H 1.09002 * 109.46849 * 240.00006 * 2 1 3 27 27 H 1.09000 * 109.47330 * 120.00407 * 2 1 3 28 28 H 0.97001 * 120.00170 * 354.23894 * 8 7 5 29 29 H 1.00901 * 110.99904 * 316.93305 * 13 3 2 30 30 H 1.09007 * 109.47283 * 304.25646 * 14 13 3 31 31 H 1.09004 * 109.47335 * 64.25440 * 14 13 3 32 32 H 1.08992 * 109.47146 * 59.99347 * 16 15 14 33 33 H 1.08995 * 109.47302 * 179.97438 * 16 15 14 34 34 H 1.09004 * 109.46599 * 299.99550 * 16 15 14 35 35 H 1.09000 * 109.46958 * 59.99983 * 17 15 14 36 36 H 1.09004 * 109.47101 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.46848 * 300.00219 * 17 15 14 38 38 H 1.08008 * 126.12600 * 0.02562 * 19 18 15 39 39 H 1.08002 * 126.04081 * 180.15478 * 20 19 18 40 40 H 1.08001 * 125.89995 * 179.71823 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1279 1.4431 -0.0685 5 6 1.4619 2.1797 -1.1803 6 1 0.7922 3.0120 -1.0219 7 6 1.7880 1.7917 -2.4626 8 7 2.6957 0.8601 -2.6569 9 14 0.9408 2.5895 -3.9238 10 1 1.4648 2.0003 -5.1821 11 1 -0.5225 2.3513 -3.8381 12 1 1.2059 4.0506 -3.9126 13 7 1.6272 2.1077 1.2430 14 6 2.5266 1.7587 2.3507 15 6 2.0056 2.3828 3.6468 16 6 1.9508 3.9042 3.4942 17 6 0.6022 1.8491 3.9417 18 7 2.9022 2.0343 4.7517 19 6 2.9355 2.6259 5.9641 20 6 3.8955 2.0141 6.6954 21 6 4.4753 1.0208 5.8995 22 7 3.8807 1.0320 4.7341 23 1 -0.3634 0.4369 -0.9301 24 1 -0.3633 -1.0240 0.0867 25 1 -0.3633 0.5871 0.8435 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.1953 0.5053 -1.9049 29 1 0.6696 1.8859 1.4710 30 1 2.5656 0.6748 2.4594 31 1 3.5263 2.1389 2.1407 32 1 1.2835 4.1632 2.6723 33 1 1.5792 4.3488 4.4174 34 1 2.9506 4.2845 3.2842 35 1 0.6412 0.7652 4.0503 36 1 0.2308 2.2941 4.8648 37 1 -0.0651 2.1081 3.1197 38 1 2.3062 3.4398 6.2929 39 1 4.1691 2.2536 7.7124 40 1 5.2759 0.3590 6.1956 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697622024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:53 Heat of formation + Delta-G solvation = 70.954131 kcal Electronic energy + Delta-G solvation = -19181.971390 eV Core-core repulsion = 16419.319455 eV Total energy + Delta-G solvation = -2762.651935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.16786 -37.79107 -35.58114 -32.27801 -30.72192 -29.90011 -29.45880 -27.38106 -26.38530 -24.46080 -23.58099 -22.09377 -20.67526 -19.59967 -19.03952 -17.28215 -16.41280 -15.21057 -15.14899 -14.55208 -13.92648 -13.82241 -13.62995 -13.54264 -13.33538 -13.01722 -12.65557 -12.52238 -12.12881 -11.99174 -11.81321 -11.57381 -11.18973 -11.12028 -10.87410 -10.77433 -10.41105 -10.24949 -10.08905 -10.02506 -9.86161 -9.29914 -8.61408 -8.51320 -8.28067 -7.39428 -6.29133 -3.99218 2.03514 2.59107 2.94046 3.45886 3.46976 3.65825 4.42468 4.57289 4.84160 4.85810 4.99594 5.04596 5.27960 5.40255 5.49081 5.52646 5.70758 5.75392 5.83046 5.90156 6.00536 6.04920 6.08161 6.11687 6.21359 6.28658 6.33814 6.38068 6.67937 6.76223 6.98098 7.03119 7.19336 7.25808 7.27468 7.84360 7.87680 8.22534 8.40752 8.61825 8.91838 9.68894 11.06433 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.005097 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.356762 B = 5491.593976 C = 5585.579566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C 0.207 3.793 4 H 0.026 0.974 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.070 3.930 15 C 0.182 3.818 16 C -0.146 4.146 17 C -0.159 4.159 18 N -0.353 5.353 19 C 0.054 3.946 20 C -0.283 4.283 21 C 0.033 3.967 22 N -0.290 5.290 23 H 0.068 0.932 24 H 0.026 0.974 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.269 0.731 29 H 0.327 0.673 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 2.944 16.022 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 C 0.098 3.902 4 H 0.044 0.956 5 C -0.610 4.610 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.306 5.306 14 C -0.060 4.060 15 C 0.099 3.901 16 C -0.204 4.204 17 C -0.218 4.218 18 N -0.136 5.136 19 C -0.094 4.094 20 C -0.313 4.313 21 C -0.153 4.153 22 N -0.111 5.111 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.185 0.815 39 H 0.160 0.840 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.230 2.986 12.922 13.449 hybrid contribution 0.009 -0.545 2.871 2.923 sum -2.220 2.441 15.794 16.135 Atomic orbital electron populations 1.21539 0.96853 0.98239 1.01783 1.22213 0.96010 1.01388 0.99670 1.19291 0.95510 0.88423 0.86941 0.95626 1.21791 1.30750 1.17488 0.90948 0.92693 1.25692 0.96699 0.95934 1.00151 1.70785 1.22116 1.26846 1.35418 0.83608 0.75584 0.75569 0.75900 1.21004 1.21579 1.21554 1.60935 1.04774 1.62426 1.02451 1.21885 0.97889 0.97764 0.88505 1.20825 0.87684 0.96540 0.85068 1.22105 1.03965 0.91665 1.02646 1.22270 0.95041 1.01788 1.02653 1.49111 1.27644 1.25924 1.10909 1.22419 1.00603 0.99691 0.86638 1.21436 1.03906 1.03636 1.02323 1.23848 1.00429 0.99467 0.91551 1.77423 1.03242 1.08805 1.21596 0.91311 0.95461 0.94792 0.91202 0.96065 0.91999 0.85251 0.94615 0.91098 0.88433 0.92938 0.91894 0.92034 0.92102 0.89700 0.81530 0.84010 0.80491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.38 37.16 0.35 -2.26 16 2 C -0.15 -3.52 5.45 -26.73 -0.15 -3.66 16 3 C 0.21 5.03 1.96 -68.86 -0.13 4.89 16 4 H 0.03 0.71 7.31 -51.93 -0.38 0.33 16 5 C -0.57 -15.32 7.43 -34.44 -0.26 -15.58 16 6 H 0.05 1.49 7.82 -52.49 -0.41 1.08 16 7 C 0.02 0.52 5.26 -17.82 -0.09 0.43 16 8 N -0.91 -26.92 12.87 55.43 0.71 -26.21 16 9 Si 1.06 24.78 29.91 -169.99 -5.08 19.70 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.67 -13.63 5.48 -107.96 -0.59 -14.23 16 14 C 0.07 1.30 4.08 -3.83 -0.02 1.28 16 15 C 0.18 2.68 1.06 -131.81 -0.14 2.54 16 16 C -0.15 -1.93 8.13 37.16 0.30 -1.62 16 17 C -0.16 -2.06 8.41 37.16 0.31 -1.75 16 18 N -0.35 -5.25 3.43 -48.65 -0.17 -5.42 16 19 C 0.05 0.66 10.60 -17.23 -0.18 0.47 16 20 C -0.28 -3.33 10.80 -40.02 -0.43 -3.76 16 21 C 0.03 0.44 12.03 -17.37 -0.21 0.23 16 22 N -0.29 -4.78 11.66 30.62 0.36 -4.43 16 23 H 0.07 1.55 7.30 -51.93 -0.38 1.17 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.63 6.24 -51.93 -0.32 0.30 16 26 H 0.07 1.78 6.27 -51.93 -0.33 1.46 16 27 H 0.02 0.46 7.05 -51.93 -0.37 0.09 16 28 H 0.27 7.94 6.06 -40.82 -0.25 7.69 16 29 H 0.33 6.19 4.38 -39.29 -0.17 6.01 16 30 H 0.04 0.72 6.92 -51.92 -0.36 0.36 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.10 1.37 7.60 -51.93 -0.39 0.98 16 33 H 0.05 0.55 7.37 -51.93 -0.38 0.17 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.08 6.47 -51.93 -0.34 0.74 16 38 H 0.17 1.49 7.55 -52.48 -0.40 1.09 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -30.22 314.41 -6.91 -37.13 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.23 Total: 7.51 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.65 Total: -18.80 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.31 Total: -50.27 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.22 -6.91 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697622024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.087 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds