Wall clock time and date at job start Mon Mar 30 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47501 * 2 1 4 4 H 1.08996 * 109.47241 * 183.82019 * 3 2 1 5 5 C 1.50701 * 109.47081 * 303.82462 * 3 2 1 6 6 H 1.07994 * 120.00128 * 115.62916 * 5 3 2 7 7 C 1.37876 * 119.99852 * 295.62202 * 5 3 2 8 8 N 1.31510 * 120.00123 * 353.80328 * 7 5 3 9 9 Si 1.86800 * 120.00014 * 173.80761 * 7 5 3 10 10 H 1.48498 * 109.47229 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46889 * 299.99877 * 9 7 5 12 12 H 1.48500 * 109.47171 * 59.99772 * 9 7 5 13 13 N 1.46906 * 109.46686 * 63.82136 * 3 2 1 14 14 C 1.46891 * 111.00106 * 80.89389 * 13 3 2 15 15 C 1.52994 * 109.47442 * 184.25490 * 14 13 3 16 16 C 1.53002 * 109.47362 * 300.00312 * 15 14 13 17 17 C 1.53009 * 109.47024 * 59.99838 * 15 14 13 18 18 N 1.46506 * 109.47673 * 179.97438 * 15 14 13 19 19 C 1.34942 * 126.04126 * 164.71523 * 18 15 14 20 20 C 1.35312 * 107.74897 * 179.83939 * 19 18 15 21 21 C 1.39868 * 107.91639 * 0.42948 * 20 19 18 22 22 N 1.30833 * 108.20332 * 359.73151 * 21 20 19 23 23 H 1.08998 * 109.47460 * 64.83677 * 1 2 3 24 24 H 1.08997 * 109.47169 * 184.84061 * 1 2 3 25 25 H 1.09003 * 109.46668 * 304.83782 * 1 2 3 26 26 H 1.09002 * 109.46849 * 240.00006 * 2 1 3 27 27 H 1.09000 * 109.47330 * 120.00407 * 2 1 3 28 28 H 0.97001 * 120.00170 * 354.23894 * 8 7 5 29 29 H 1.00901 * 110.99904 * 316.93305 * 13 3 2 30 30 H 1.09007 * 109.47283 * 304.25646 * 14 13 3 31 31 H 1.09004 * 109.47335 * 64.25440 * 14 13 3 32 32 H 1.08992 * 109.47146 * 59.99347 * 16 15 14 33 33 H 1.08995 * 109.47302 * 179.97438 * 16 15 14 34 34 H 1.09004 * 109.46599 * 299.99550 * 16 15 14 35 35 H 1.09000 * 109.46958 * 59.99983 * 17 15 14 36 36 H 1.09004 * 109.47101 * 180.02562 * 17 15 14 37 37 H 1.09001 * 109.46848 * 300.00219 * 17 15 14 38 38 H 1.08008 * 126.12600 * 0.02562 * 19 18 15 39 39 H 1.08002 * 126.04081 * 180.15478 * 20 19 18 40 40 H 1.08001 * 125.89995 * 179.71823 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1279 1.4431 -0.0685 5 6 1.4619 2.1797 -1.1803 6 1 0.7922 3.0120 -1.0219 7 6 1.7880 1.7917 -2.4626 8 7 2.6957 0.8601 -2.6569 9 14 0.9408 2.5895 -3.9238 10 1 1.4648 2.0003 -5.1821 11 1 -0.5225 2.3513 -3.8381 12 1 1.2059 4.0506 -3.9126 13 7 1.6272 2.1077 1.2430 14 6 2.5266 1.7587 2.3507 15 6 2.0056 2.3828 3.6468 16 6 1.9508 3.9042 3.4942 17 6 0.6022 1.8491 3.9417 18 7 2.9022 2.0343 4.7517 19 6 2.9355 2.6259 5.9641 20 6 3.8955 2.0141 6.6954 21 6 4.4753 1.0208 5.8995 22 7 3.8807 1.0320 4.7341 23 1 -0.3634 0.4369 -0.9301 24 1 -0.3633 -1.0240 0.0867 25 1 -0.3633 0.5871 0.8435 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.1953 0.5053 -1.9049 29 1 0.6696 1.8859 1.4710 30 1 2.5656 0.6748 2.4594 31 1 3.5263 2.1389 2.1407 32 1 1.2835 4.1632 2.6723 33 1 1.5792 4.3488 4.4174 34 1 2.9506 4.2845 3.2842 35 1 0.6412 0.7652 4.0503 36 1 0.2308 2.2941 4.8648 37 1 -0.0651 2.1081 3.1197 38 1 2.3062 3.4398 6.2929 39 1 4.1691 2.2536 7.7124 40 1 5.2759 0.3590 6.1956 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697622024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:53 Heat of formation + Delta-G solvation = 51.913900 kcal Electronic energy + Delta-G solvation = -19182.797036 eV Core-core repulsion = 16419.319455 eV Total energy + Delta-G solvation = -2763.477581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19312 -39.33314 -37.14550 -34.15945 -32.34115 -31.03399 -30.56558 -28.42550 -28.18486 -26.09647 -25.49599 -23.26297 -21.72775 -21.40492 -20.23132 -18.98397 -17.81387 -16.81516 -16.30248 -15.99479 -15.56206 -15.34537 -15.17863 -14.95259 -14.59573 -14.37883 -14.12584 -13.67201 -13.48276 -13.24166 -13.13734 -13.03680 -12.88556 -12.60263 -12.36018 -12.25057 -11.97400 -11.92841 -11.87803 -11.71845 -11.44644 -10.64171 -10.40960 -10.36850 -9.49126 -9.16092 -8.51050 -6.21702 1.05799 1.55177 1.57477 1.64284 1.82807 1.99983 2.61326 3.17034 3.25726 3.63484 3.75505 3.83694 4.01081 4.13525 4.27708 4.28971 4.46042 4.49888 4.50848 4.58502 4.62702 4.77312 4.80345 4.85389 4.91565 4.94407 5.05904 5.11114 5.16811 5.18285 5.26833 5.35626 5.49117 5.79268 5.91577 6.16742 6.21605 6.49190 6.68702 6.72301 6.85306 7.55245 8.84104 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.005097 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.356762 B = 5491.593976 C = 5585.579566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.145 4.145 3 C 0.210 3.790 4 H -0.017 1.017 5 C -0.572 4.572 6 H 0.053 0.947 7 C -0.030 4.030 8 N -0.940 5.940 9 Si 1.110 2.890 10 H -0.291 1.291 11 H -0.268 1.268 12 H -0.275 1.275 13 N -0.665 5.665 14 C 0.082 3.918 15 C 0.187 3.813 16 C -0.140 4.140 17 C -0.154 4.154 18 N -0.368 5.368 19 C 0.055 3.945 20 C -0.283 4.283 21 C 0.028 3.972 22 N -0.351 5.351 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.027 0.973 28 H 0.254 0.746 29 H 0.339 0.661 30 H 0.015 0.985 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.205 0.795 39 H 0.173 0.827 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 4.307 18.082 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.185 4.185 3 C 0.101 3.899 4 H 0.001 0.999 5 C -0.611 4.611 6 H 0.072 0.928 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.217 1.217 11 H -0.193 1.193 12 H -0.200 1.200 13 N -0.299 5.299 14 C -0.048 4.048 15 C 0.104 3.896 16 C -0.198 4.198 17 C -0.212 4.212 18 N -0.151 5.151 19 C -0.092 4.092 20 C -0.313 4.313 21 C -0.157 4.157 22 N -0.172 5.172 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.161 0.839 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.221 0.779 39 H 0.190 0.810 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.149 4.354 15.025 16.184 hybrid contribution 0.695 -0.973 2.348 2.635 sum -3.454 3.381 17.372 18.032 Atomic orbital electron populations 1.21450 0.94431 1.00053 1.01659 1.22063 0.98034 0.99941 0.98422 1.19062 0.92887 0.89559 0.88403 0.99904 1.22040 1.30029 1.17219 0.91788 0.92828 1.27049 0.96598 0.95761 1.03325 1.70906 1.23603 1.28611 1.34770 0.83013 0.75761 0.75364 0.72538 1.21732 1.19314 1.20027 1.60765 1.05642 1.61731 1.01734 1.21679 0.96289 0.96641 0.90204 1.20709 0.88529 0.97215 0.83188 1.22064 1.02971 0.90449 1.04294 1.22241 0.93641 1.01016 1.04276 1.49085 1.27854 1.26431 1.11738 1.23100 1.00804 0.99935 0.85321 1.21847 1.03274 1.02691 1.03453 1.24401 1.00381 0.99908 0.90971 1.77385 1.05180 1.10910 1.23748 0.93235 0.93137 0.92562 0.94286 0.95424 0.93596 0.83948 0.96713 0.94226 0.89244 0.89117 0.93591 0.93422 0.89023 0.89441 0.77875 0.80998 0.78318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.38 71.98 0.68 -4.10 16 2 C -0.14 -6.83 5.45 30.59 0.17 -6.66 16 3 C 0.21 10.60 1.96 44.17 0.09 10.69 16 4 H -0.02 -0.99 7.31 -2.39 -0.02 -1.01 16 5 C -0.57 -31.14 7.43 25.60 0.19 -30.95 16 6 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 7 C -0.03 -1.67 5.26 84.65 0.45 -1.23 16 8 N -0.94 -57.26 12.87 21.45 0.28 -56.98 16 9 Si 1.11 49.78 29.91 68.60 2.05 51.83 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.67 -27.29 5.48 -495.46 -2.71 -30.01 16 14 C 0.08 3.15 4.08 86.30 0.35 3.50 16 15 C 0.19 5.30 1.06 3.60 0.00 5.31 16 16 C -0.14 -3.42 8.13 71.98 0.59 -2.83 16 17 C -0.15 -3.61 8.41 71.99 0.61 -3.00 16 18 N -0.37 -10.48 3.43 -307.82 -1.06 -11.54 16 19 C 0.05 1.16 10.60 83.54 0.89 2.05 16 20 C -0.28 -5.86 10.80 21.99 0.24 -5.62 16 21 C 0.03 0.73 12.03 85.24 1.02 1.75 16 22 N -0.35 -11.64 11.66 -57.03 -0.66 -12.30 16 23 H 0.05 2.18 7.30 -2.39 -0.02 2.16 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.98 6.24 -2.39 -0.01 1.97 16 26 H 0.04 2.07 6.27 -2.39 -0.01 2.05 16 27 H 0.03 1.23 7.05 -2.39 -0.02 1.22 16 28 H 0.25 15.86 6.06 -92.71 -0.56 15.30 16 29 H 0.34 12.51 4.38 -89.69 -0.39 12.12 16 30 H 0.01 0.62 6.92 -2.38 -0.02 0.61 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.35 7.60 -2.39 -0.02 2.33 16 33 H 0.09 1.52 7.37 -2.39 -0.02 1.50 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.09 1.99 6.47 -2.39 -0.02 1.98 16 38 H 0.20 2.60 7.55 -2.91 -0.02 2.58 16 39 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.20 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -68.57 314.41 3.98 -64.59 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.83 Total: 25.51 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 5.26 Total: -31.10 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.16 Total: -110.83 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -68.57 3.98 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697622024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.508 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds