Wall clock time and date at job start Mon Mar 30 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.50710 * 109.47272 * 175.00070 * 6 3 2 8 8 C 1.39867 * 126.03850 * 269.69359 * 7 6 3 9 9 N 1.30835 * 108.20195 * 179.81399 * 8 7 6 10 10 N 1.40083 * 108.20402 * 0.44323 * 9 8 7 11 11 C 1.46506 * 126.03775 * 179.69508 * 10 9 8 12 12 C 1.52995 * 109.46964 * 305.02235 * 11 10 9 13 13 C 1.52997 * 109.47115 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47337 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99675 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.46914 * 60.00128 * 18 16 14 20 20 H 1.48503 * 109.46999 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47017 * 300.00099 * 18 16 14 22 22 C 1.34952 * 107.92347 * 359.71481 * 10 9 8 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.00892 * 110.99957 * 60.00190 * 5 3 2 29 29 H 1.00899 * 110.99816 * 183.95423 * 5 3 2 30 30 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 31 31 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 32 32 H 1.07999 * 125.89733 * 0.02562 * 8 7 6 33 33 H 1.08994 * 109.46597 * 65.02390 * 11 10 9 34 34 H 1.08996 * 109.46924 * 185.02205 * 11 10 9 35 35 H 1.09001 * 109.47205 * 300.00120 * 12 11 10 36 36 H 1.08996 * 109.47324 * 60.00215 * 12 11 10 37 37 H 1.09001 * 109.47178 * 300.00131 * 13 12 11 38 38 H 1.09000 * 109.47169 * 59.99523 * 13 12 11 39 39 H 0.97009 * 119.99960 * 179.97438 * 17 16 14 40 40 H 1.08004 * 126.12527 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5648 1.4442 -0.1257 7 6 4.0571 2.8633 -0.2492 8 6 4.2389 3.5703 -1.4422 9 7 4.6727 4.7684 -1.1452 10 7 4.7905 4.8583 0.2477 11 6 5.2496 6.0286 1.0001 12 6 6.6243 6.4591 0.4846 13 6 7.1041 7.6808 1.2707 14 6 8.4578 8.1053 0.7625 15 1 8.9291 7.5582 -0.0406 16 6 9.0948 9.1923 1.3229 17 7 8.5212 9.8582 2.3011 18 14 10.7731 9.7180 0.6934 19 1 10.6755 10.0629 -0.7476 20 1 11.2387 10.9039 1.4564 21 1 11.7396 8.6046 0.8715 22 6 4.4067 3.6765 0.7742 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.0423 1.6179 2.0513 29 1 1.9205 3.0717 1.2529 30 1 4.0030 0.9834 0.7597 31 1 3.8571 0.8799 -1.0113 32 1 4.0502 3.1936 -2.4366 33 1 4.5402 6.8457 0.8694 34 1 5.3212 5.7753 2.0578 35 1 7.3336 5.6419 0.6153 36 1 6.5527 6.7124 -0.5731 37 1 6.3948 8.4982 1.1405 38 1 7.1757 7.4272 2.3284 39 1 8.9695 10.6227 2.6956 40 1 4.3834 3.4247 1.8242 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703455971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:48 Heat of formation + Delta-G solvation = 41.606118 kcal Electronic energy + Delta-G solvation = -17737.423292 eV Core-core repulsion = 14973.498732 eV Total energy + Delta-G solvation = -2763.924560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11639 -37.32817 -35.00701 -32.90325 -31.84243 -30.77129 -30.43788 -27.93151 -26.30715 -23.86562 -23.30619 -21.09618 -20.65849 -20.41651 -19.60372 -16.87362 -16.38276 -16.02809 -15.20413 -14.93179 -14.51977 -14.30900 -14.02557 -13.92031 -13.50556 -13.36861 -12.89619 -12.42585 -12.32665 -12.06933 -11.91561 -11.61346 -11.32886 -11.06028 -10.97191 -10.91064 -10.84244 -10.63777 -10.29550 -9.84356 -9.61649 -9.30841 -9.11077 -8.90133 -8.41408 -8.12374 -6.06661 -4.09249 2.07948 2.78164 2.88524 3.30582 3.34627 3.37832 4.41115 4.46497 4.58205 4.79917 4.88719 4.93232 5.10071 5.19540 5.29267 5.32627 5.36656 5.53052 5.57050 5.64522 5.77664 5.81217 5.81860 5.83240 5.94922 6.05564 6.19199 6.22393 6.46184 6.58839 6.78936 6.95943 7.05656 7.25639 7.33890 7.55205 7.66515 7.91124 7.91901 8.33749 8.96485 9.55232 11.04663 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.061387 B = 0.003108 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.015179 B = 9007.411280 C = 9222.589807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.095 3.905 4 H 0.079 0.921 5 N -0.841 5.841 6 C -0.071 4.071 7 C -0.251 4.251 8 C 0.038 3.962 9 N -0.284 5.284 10 N -0.353 5.353 11 C 0.127 3.873 12 C -0.118 4.118 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.049 3.951 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.334 0.666 29 H 0.342 0.658 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.262 0.738 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -18.119 -2.367 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.018 4.018 4 H 0.097 0.903 5 N -0.370 5.370 6 C -0.111 4.111 7 C -0.263 4.263 8 C -0.147 4.147 9 N -0.106 5.106 10 N -0.134 5.134 11 C 0.007 3.993 12 C -0.157 4.157 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.099 4.099 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.193 0.807 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.505 -16.845 -2.828 21.775 hybrid contribution 1.846 -0.231 0.218 1.873 sum -11.659 -17.076 -2.610 20.841 Atomic orbital electron populations 1.21664 0.95404 1.00584 1.02506 1.21550 0.96636 0.95620 1.01569 1.21511 0.92178 0.94789 0.93273 0.90315 1.58973 1.67054 1.07179 1.03808 1.20687 0.96389 0.91755 1.02304 1.19918 1.15624 0.98466 0.92257 1.23696 1.00231 0.91727 0.99071 1.77410 1.21859 1.20072 0.91246 1.49007 1.48437 1.11428 1.04535 1.22170 0.98786 0.84321 0.94028 1.21940 0.91701 1.00457 1.01569 1.19057 0.96321 0.90988 0.94949 1.21143 1.02930 1.13099 1.18828 0.92679 1.25014 0.98007 0.96372 0.94989 1.69942 1.38537 1.20038 1.24959 0.86619 0.84152 0.78035 0.79003 1.20148 1.21207 1.20221 1.22304 1.01103 0.87128 0.99345 0.93220 0.91597 0.93690 0.92307 0.91910 0.85407 0.84414 0.91903 0.91082 0.80738 0.89891 0.89036 0.92952 0.91734 0.96232 0.96435 0.92842 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.80 37.16 0.36 -0.74 16 2 C -0.12 -0.86 5.58 -26.74 -0.15 -1.00 16 3 C 0.09 0.80 2.79 -67.71 -0.19 0.61 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 N -0.84 -7.26 8.65 -4.67 -0.04 -7.30 16 6 C -0.07 -0.63 5.35 -27.88 -0.15 -0.78 16 7 C -0.25 -2.96 4.84 -105.05 -0.51 -3.47 16 8 C 0.04 0.52 11.96 -17.37 -0.21 0.32 16 9 N -0.28 -4.82 12.42 30.62 0.38 -4.44 16 10 N -0.35 -5.56 3.68 -61.37 -0.23 -5.79 16 11 C 0.13 2.09 6.51 -4.04 -0.03 2.06 16 12 C -0.12 -2.44 5.34 -26.74 -0.14 -2.59 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.05 0.62 10.37 -17.23 -0.18 0.44 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.33 2.47 9.00 -39.30 -0.35 2.12 16 29 H 0.34 3.25 7.50 -39.29 -0.29 2.96 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -30.87 333.17 -7.82 -38.69 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.93 Total: 1.24 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.74 Total: -18.22 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.85 Total: -43.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.87 -7.82 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703455971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.294 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds