Wall clock time and date at job start Mon Mar 30 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.50710 * 109.47272 * 175.00070 * 6 3 2 8 8 C 1.39867 * 126.03850 * 269.69359 * 7 6 3 9 9 N 1.30835 * 108.20195 * 179.81399 * 8 7 6 10 10 N 1.40083 * 108.20402 * 0.44323 * 9 8 7 11 11 C 1.46506 * 126.03775 * 179.69508 * 10 9 8 12 12 C 1.52995 * 109.46964 * 305.02235 * 11 10 9 13 13 C 1.52997 * 109.47115 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47337 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99675 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.46914 * 60.00128 * 18 16 14 20 20 H 1.48503 * 109.46999 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47017 * 300.00099 * 18 16 14 22 22 C 1.34952 * 107.92347 * 359.71481 * 10 9 8 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.00892 * 110.99957 * 60.00190 * 5 3 2 29 29 H 1.00899 * 110.99816 * 183.95423 * 5 3 2 30 30 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 31 31 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 32 32 H 1.07999 * 125.89733 * 0.02562 * 8 7 6 33 33 H 1.08994 * 109.46597 * 65.02390 * 11 10 9 34 34 H 1.08996 * 109.46924 * 185.02205 * 11 10 9 35 35 H 1.09001 * 109.47205 * 300.00120 * 12 11 10 36 36 H 1.08996 * 109.47324 * 60.00215 * 12 11 10 37 37 H 1.09001 * 109.47178 * 300.00131 * 13 12 11 38 38 H 1.09000 * 109.47169 * 59.99523 * 13 12 11 39 39 H 0.97009 * 119.99960 * 179.97438 * 17 16 14 40 40 H 1.08004 * 126.12527 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5648 1.4442 -0.1257 7 6 4.0571 2.8633 -0.2492 8 6 4.2389 3.5703 -1.4422 9 7 4.6727 4.7684 -1.1452 10 7 4.7905 4.8583 0.2477 11 6 5.2496 6.0286 1.0001 12 6 6.6243 6.4591 0.4846 13 6 7.1041 7.6808 1.2707 14 6 8.4578 8.1053 0.7625 15 1 8.9291 7.5582 -0.0406 16 6 9.0948 9.1923 1.3229 17 7 8.5212 9.8582 2.3011 18 14 10.7731 9.7180 0.6934 19 1 10.6755 10.0629 -0.7476 20 1 11.2387 10.9039 1.4564 21 1 11.7396 8.6046 0.8715 22 6 4.4067 3.6765 0.7742 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.0423 1.6179 2.0513 29 1 1.9205 3.0717 1.2529 30 1 4.0030 0.9834 0.7597 31 1 3.8571 0.8799 -1.0113 32 1 4.0502 3.1936 -2.4366 33 1 4.5402 6.8457 0.8694 34 1 5.3212 5.7753 2.0578 35 1 7.3336 5.6419 0.6153 36 1 6.5527 6.7124 -0.5731 37 1 6.3948 8.4982 1.1405 38 1 7.1757 7.4272 2.3284 39 1 8.9695 10.6227 2.6956 40 1 4.3834 3.4247 1.8242 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703455971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:48 Heat of formation + Delta-G solvation = 22.333571 kcal Electronic energy + Delta-G solvation = -17738.259012 eV Core-core repulsion = 14973.498732 eV Total energy + Delta-G solvation = -2764.760280 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.17240 -38.05488 -36.63305 -34.71255 -32.73171 -32.24864 -31.24084 -29.21091 -27.64191 -25.37962 -24.22215 -22.66050 -21.62805 -21.40149 -20.71890 -18.62125 -17.59218 -17.02555 -16.59163 -16.39329 -15.72157 -15.39849 -15.13885 -14.88493 -14.40340 -14.32850 -14.17013 -13.80615 -13.67568 -13.37768 -13.00412 -12.77345 -12.70279 -12.59861 -12.50958 -12.02804 -11.79502 -11.67562 -11.57318 -11.53228 -11.32067 -11.21450 -10.59452 -10.36293 -9.65647 -9.08350 -8.25004 -6.35772 1.02761 1.37314 1.39757 1.47899 1.65233 1.89584 2.37736 3.08363 3.59689 3.82656 3.96175 3.99062 4.09142 4.20720 4.26444 4.39653 4.44664 4.50543 4.59334 4.71570 4.84524 4.90369 4.90748 4.97105 5.07635 5.13136 5.19981 5.23943 5.29181 5.43900 5.50749 5.59050 5.63244 5.77020 5.81668 6.13369 6.22951 6.39916 6.71071 6.78609 6.84176 7.33219 8.86230 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.061387 B = 0.003108 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.015179 B = 9007.411280 C = 9222.589807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.100 3.900 4 H 0.064 0.936 5 N -0.845 5.845 6 C -0.064 4.064 7 C -0.243 4.243 8 C 0.037 3.963 9 N -0.338 5.338 10 N -0.371 5.371 11 C 0.138 3.862 12 C -0.099 4.099 13 C 0.030 3.970 14 C -0.548 4.548 15 H 0.052 0.948 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.268 1.268 22 C 0.049 3.951 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.342 0.658 29 H 0.337 0.663 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.046 0.954 36 H 0.044 0.956 37 H -0.001 1.001 38 H 0.006 0.994 39 H 0.266 0.734 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 -19.900 -2.331 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.012 4.012 4 H 0.082 0.918 5 N -0.375 5.375 6 C -0.104 4.104 7 C -0.255 4.255 8 C -0.148 4.148 9 N -0.160 5.160 10 N -0.153 5.153 11 C 0.018 3.982 12 C -0.138 4.138 13 C -0.008 4.008 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.787 3.213 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.097 4.097 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.215 0.785 33 H 0.098 0.902 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.426 -18.657 -2.796 23.155 hybrid contribution 1.749 0.256 0.189 1.778 sum -11.677 -18.401 -2.607 21.949 Atomic orbital electron populations 1.21642 0.95766 1.00945 1.01689 1.21530 0.96246 0.94854 1.02390 1.21432 0.91750 0.95290 0.92704 0.91806 1.58962 1.67306 1.06960 1.04267 1.20712 0.96503 0.89862 1.03318 1.20240 1.14447 0.99547 0.91249 1.24234 0.98724 0.91038 1.00805 1.77363 1.24246 1.22122 0.92256 1.48842 1.50032 1.12034 1.04361 1.21874 0.95978 0.85227 0.95167 1.21589 0.94253 0.98224 0.99694 1.18920 0.94908 0.92201 0.94780 1.21581 1.04442 1.13606 1.19012 0.92982 1.25906 1.02068 0.96336 0.95109 1.70052 1.40241 1.20501 1.26003 0.85545 0.79299 0.77938 0.78560 1.19535 1.20386 1.19243 1.22875 0.99952 0.85875 1.01000 0.93730 0.92703 0.92766 0.91603 0.90938 0.84459 0.84996 0.90736 0.90140 0.78513 0.90168 0.86524 0.93510 0.93687 0.98271 0.97524 0.92555 0.78839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.80 71.98 0.71 -1.25 16 2 C -0.11 -1.38 5.58 30.59 0.17 -1.21 16 3 C 0.10 1.48 2.79 44.91 0.13 1.60 16 4 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 5 N -0.85 -12.92 8.65 -168.67 -1.46 -14.38 16 6 C -0.06 -0.95 5.35 29.85 0.16 -0.79 16 7 C -0.24 -5.25 4.84 -20.14 -0.10 -5.35 16 8 C 0.04 0.97 11.96 85.24 1.02 1.99 16 9 N -0.34 -11.42 12.42 -57.03 -0.71 -12.13 16 10 N -0.37 -11.43 3.68 -348.07 -1.28 -12.71 16 11 C 0.14 4.52 6.51 86.38 0.56 5.08 16 12 C -0.10 -4.18 5.34 30.59 0.16 -4.01 16 13 C 0.03 1.53 4.97 29.85 0.15 1.68 16 14 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 18 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.05 1.15 10.37 83.54 0.87 2.02 16 23 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.05 0.87 7.75 -2.39 -0.02 0.85 16 25 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.34 4.23 9.00 -89.70 -0.81 3.42 16 29 H 0.34 5.81 7.50 -89.69 -0.67 5.14 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.20 3.93 8.06 -2.91 -0.02 3.90 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.12 3.18 8.07 -2.39 -0.02 3.16 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 40 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -66.88 333.17 2.91 -63.97 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.47 Total: 15.06 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 4.52 Total: -30.87 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.16 Total: -94.68 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.88 2.91 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703455971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.305 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds