Wall clock time and date at job start Mon Mar 30 2020 03:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42899 * 109.57397 * 68.21303 * 3 2 1 5 5 C 1.53117 * 109.52327 * 308.05512 * 3 2 1 6 6 C 1.53039 * 109.27821 * 297.74886 * 5 3 2 7 7 N 1.46841 * 109.52576 * 300.82139 * 6 5 3 8 8 C 1.46896 * 111.00407 * 185.84260 * 7 6 5 9 9 C 1.52996 * 109.47438 * 170.00191 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 59.99696 * 16 14 12 18 18 H 1.48506 * 109.47297 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47261 * 299.99689 * 16 14 12 20 20 C 1.46843 * 111.19959 * 61.73796 * 7 6 5 21 21 C 1.53035 * 109.52488 * 298.26454 * 20 7 6 22 22 H 4.38648 * 5.43527 * 180.02562 * 4 1 2 23 23 H 0.96702 * 114.00234 * 59.84277 * 4 3 2 24 24 H 1.09005 * 109.50645 * 177.81002 * 5 3 2 25 25 H 1.09002 * 109.53781 * 57.71004 * 5 3 2 26 26 H 1.09002 * 109.46240 * 180.80706 * 6 5 3 27 27 H 1.08998 * 109.46328 * 60.84423 * 6 5 3 28 28 H 1.09000 * 109.47585 * 49.99397 * 8 7 6 29 29 H 1.09001 * 109.46551 * 289.99882 * 8 7 6 30 30 H 1.08996 * 109.47452 * 59.99844 * 9 8 7 31 31 H 1.09001 * 109.46997 * 299.99418 * 9 8 7 32 32 H 1.09001 * 109.47502 * 60.00153 * 10 9 8 33 33 H 1.09001 * 109.47289 * 299.99950 * 10 9 8 34 34 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 35 35 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 36 36 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.45803 * 58.27591 * 20 7 6 38 38 H 1.09003 * 109.46921 * 178.24040 * 20 7 6 39 39 H 1.08997 * 109.50241 * 299.23141 * 21 20 7 40 40 H 1.09004 * 109.50497 * 179.11966 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1249 -0.4989 -1.2502 5 6 3.1581 -0.8887 1.1363 6 6 2.6927 -0.3143 2.4764 7 7 3.2079 1.0521 2.6301 8 6 2.8977 1.5849 3.9634 9 6 3.6554 2.8967 4.1775 10 6 3.3317 3.4519 5.5659 11 6 4.0899 4.7635 5.7803 12 6 3.7716 5.3100 7.1481 13 1 3.0957 4.7756 7.7993 14 6 4.3424 6.4928 7.5678 15 7 5.1650 7.1438 6.7748 16 14 3.9472 7.1706 9.2631 17 1 4.3577 6.1873 10.2974 18 1 4.6833 8.4435 9.4712 19 1 2.4871 7.4197 9.3686 20 6 2.6918 1.9358 1.5770 21 6 3.1570 1.4286 0.2102 22 1 -1.0499 0.0001 -0.0002 23 1 2.8383 0.0175 -2.0160 24 1 4.2474 -0.9191 1.1121 25 1 2.7631 -1.8975 1.0160 26 1 3.0678 -0.9373 3.2884 27 1 1.6033 -0.2972 2.5055 28 1 3.1992 0.8631 4.7224 29 1 1.8259 1.7675 4.0412 30 1 3.3537 3.6186 3.4186 31 1 4.7272 2.7141 4.0997 32 1 3.6331 2.7302 6.3252 33 1 2.2599 3.6346 5.6434 34 1 5.1617 4.5803 5.7030 35 1 3.7890 5.4853 5.0211 36 1 5.5663 7.9761 7.0699 37 1 1.6022 1.9425 1.6103 38 1 3.0659 2.9472 1.7358 39 1 4.2463 1.4347 0.1712 40 1 2.7608 2.0758 -0.5723 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708165169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:30 Heat of formation + Delta-G solvation = -35.832568 kcal Electronic energy + Delta-G solvation = -18144.695613 eV Core-core repulsion = 15345.120309 eV Total energy + Delta-G solvation = -2799.575304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82255 -38.11928 -36.32599 -34.70177 -33.72615 -32.25917 -32.01891 -29.77158 -26.69743 -24.89654 -24.37972 -22.78842 -21.79298 -21.52457 -19.23194 -18.41239 -17.79154 -16.90450 -16.57471 -16.49909 -15.93475 -15.63989 -15.55704 -15.02834 -14.52609 -14.18594 -13.95316 -13.65648 -13.38187 -12.94854 -12.93065 -12.68646 -12.49175 -12.34846 -12.23109 -12.16348 -12.05326 -11.81430 -11.58764 -11.56335 -11.32451 -11.28595 -10.99596 -10.79571 -10.54229 -9.30914 -8.19091 -6.30724 1.39851 1.43290 1.51231 1.70181 1.76702 2.41394 2.84029 3.13480 3.22648 3.26378 3.70941 3.75633 4.00677 4.14876 4.22948 4.34726 4.41647 4.48426 4.55284 4.63789 4.69656 4.77702 4.80807 4.85803 4.91579 4.92921 5.04496 5.09543 5.21712 5.25571 5.29770 5.37232 5.55830 5.78697 5.87637 6.07275 6.12691 6.26839 6.56253 6.68285 6.86733 7.38541 8.92600 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.047936 B = 0.003301 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.968264 B = 8481.513328 C = 8575.093424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.243 4.243 3 C 0.243 3.757 4 O -0.558 6.558 5 C -0.096 4.096 6 C 0.060 3.940 7 N -0.545 5.545 8 C 0.067 3.933 9 C -0.103 4.103 10 C -0.097 4.097 11 C 0.024 3.976 12 C -0.546 4.546 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.054 3.946 21 C -0.130 4.130 22 H 0.245 0.755 23 H 0.394 0.606 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.048 0.952 34 H -0.010 1.010 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -15.915 -14.551 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.244 4.244 3 C 0.203 3.797 4 O -0.366 6.366 5 C -0.134 4.134 6 C -0.068 4.068 7 N -0.270 5.270 8 C -0.061 4.061 9 C -0.141 4.141 10 C -0.135 4.135 11 C -0.013 4.013 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.074 4.074 21 C -0.168 4.168 22 H 0.262 0.738 23 H 0.244 0.756 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.286 -16.238 -14.233 22.789 hybrid contribution -1.266 1.248 0.464 1.838 sum -8.551 -14.990 -13.768 22.077 Atomic orbital electron populations 1.25804 0.96812 0.99104 0.97458 1.24134 0.95632 1.01800 1.02806 1.18086 0.81870 0.94149 0.85624 1.86571 1.75995 1.58105 1.15975 1.21502 1.02470 0.98321 0.91103 1.22076 0.97343 0.89576 0.97804 1.61954 1.59955 1.02460 1.02609 1.22022 0.97462 0.96476 0.90100 1.21494 1.00303 0.95779 0.96489 1.21404 0.99272 0.96809 0.96003 1.19009 0.94389 0.92919 0.95026 1.21727 1.27363 1.07284 1.02053 0.92175 1.26018 0.94840 0.97313 1.01835 1.70095 1.31697 1.17097 1.38569 0.85492 0.78653 0.77599 0.79251 1.19100 1.20800 1.19122 1.22083 0.97063 0.97245 0.91023 1.22220 1.02721 0.94906 0.96935 0.73844 0.75599 0.89597 0.90058 0.88952 0.94972 0.89945 0.94946 0.92996 0.92463 0.92887 0.93290 0.99203 0.99316 0.92771 0.95119 0.90539 0.89511 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 19.25 74.32 1.43 -1.48 16 2 C -0.24 -4.82 9.86 31.13 0.31 -4.51 16 3 C 0.24 4.79 1.10 -12.52 -0.01 4.78 16 4 O -0.56 -10.34 12.96 -148.98 -1.93 -12.27 16 5 C -0.10 -1.92 5.23 30.65 0.16 -1.76 16 6 C 0.06 1.26 5.25 86.33 0.45 1.72 16 7 N -0.54 -13.70 4.66 -896.39 -4.17 -17.88 16 8 C 0.07 1.85 4.96 86.30 0.43 2.28 16 9 C -0.10 -3.54 5.14 30.59 0.16 -3.38 16 10 C -0.10 -4.03 5.15 30.60 0.16 -3.87 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 15 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 16 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.05 1.29 5.08 86.33 0.44 1.73 16 21 C -0.13 -2.58 5.20 30.64 0.16 -2.42 16 22 H 0.25 2.23 7.80 -4.42 -0.03 2.20 16 23 H 0.39 4.36 9.03 -74.06 -0.67 3.69 16 24 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.76 8.02 -2.39 -0.02 1.74 16 27 H 0.03 0.70 7.31 -2.39 -0.02 0.68 16 28 H 0.08 2.14 7.99 -2.39 -0.02 2.13 16 29 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 30 H 0.05 1.81 6.43 -2.39 -0.02 1.80 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.03 0.75 7.31 -2.38 -0.02 0.74 16 38 H 0.08 2.00 6.21 -2.39 -0.01 1.98 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -68.25 325.08 1.06 -67.20 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.33 Total: 10.62 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.52 Total: -36.77 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -3.89 Total: -75.58 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.93 Total: -12.27 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.25 1.06 -67.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708165169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.364 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds