Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47308 * 2 1 4 4 C 1.46894 * 110.99971 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47175 * 324.99947 * 4 3 2 6 6 C 1.53002 * 109.47480 * 85.00151 * 4 3 2 7 7 C 1.52997 * 109.47239 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47176 * 299.99549 * 7 6 4 9 9 C 1.53009 * 109.46935 * 60.00101 * 8 7 6 10 10 H 1.08996 * 109.46950 * 59.99959 * 9 8 7 11 11 N 1.46500 * 109.47002 * 180.02562 * 9 8 7 12 12 C 1.36933 * 119.99993 * 60.00239 * 11 9 8 13 13 H 1.07995 * 120.00218 * 16.36331 * 12 11 9 14 14 C 1.38812 * 119.99817 * 196.36364 * 12 11 9 15 15 N 1.31625 * 120.00011 * 22.62760 * 14 12 11 16 16 Si 1.86798 * 120.00113 * 202.62534 * 14 12 11 17 17 H 1.48504 * 109.46854 * 85.76606 * 16 14 12 18 18 H 1.48494 * 109.47276 * 205.76561 * 16 14 12 19 19 H 1.48494 * 109.47361 * 325.76917 * 16 14 12 20 20 C 1.46507 * 119.99693 * 239.99921 * 11 9 8 21 21 C 1.47198 * 109.47044 * 84.00784 * 20 11 9 22 22 N 8.76157 * 152.23234 * 24.60225 * 2 1 3 23 23 C 1.52997 * 109.47106 * 299.99941 * 9 8 7 24 24 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47020 * 299.99889 * 1 2 3 26 26 H 1.09004 * 109.46751 * 60.00328 * 1 2 3 27 27 H 1.09002 * 109.47479 * 240.00223 * 2 1 3 28 28 H 1.09002 * 109.47284 * 120.00211 * 2 1 3 29 29 H 1.00903 * 110.99904 * 303.95316 * 3 2 1 30 30 H 1.08998 * 109.46617 * 300.00000 * 6 4 3 31 31 H 1.08996 * 109.47084 * 59.99739 * 6 4 3 32 32 H 1.08996 * 109.47230 * 59.99909 * 7 6 4 33 33 H 1.09002 * 109.46909 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47515 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47335 * 300.00296 * 8 7 6 36 36 H 0.96999 * 119.99858 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46790 * 204.00842 * 20 11 9 38 38 H 1.08997 * 109.47324 * 324.00991 * 20 11 9 39 39 H 1.08996 * 109.47230 * 299.99846 * 23 9 8 40 40 H 1.09002 * 109.46909 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8740 0.5923 0.5885 6 6 4.0008 1.3123 -1.4378 7 6 5.5302 1.3537 -1.4385 8 6 6.0049 2.6744 -0.8291 9 6 5.4922 2.7863 0.6082 10 1 5.8785 1.9547 1.1974 11 7 5.9462 4.0512 1.1915 12 6 5.5823 5.2397 0.6170 13 1 4.7647 5.2708 -0.0878 14 6 6.2644 6.4046 0.9406 15 7 7.4899 6.3390 1.4164 16 14 5.4432 8.0651 0.7008 17 1 4.6329 8.3945 1.9009 18 1 6.4824 9.1074 0.5038 19 1 4.5614 8.0135 -0.4929 20 6 6.7896 4.0444 2.3895 21 6 8.1964 3.8587 1.9981 22 7 9.2826 3.7113 1.6994 23 6 3.9628 2.7449 0.6088 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6442 1.9013 -0.7814 30 1 3.6622 0.3717 -1.8721 31 1 3.6149 2.1442 -2.0270 32 1 5.9164 0.5221 -0.8492 33 1 5.8954 1.2745 -2.4625 34 1 7.0944 2.7038 -0.8291 35 1 5.6187 3.5060 -1.4184 36 1 7.9667 7.1531 1.6421 37 1 6.6809 4.9928 2.9156 38 1 6.4840 3.2285 3.0444 39 1 3.5766 3.5765 0.0196 40 1 3.5977 2.8242 1.6328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712746174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = 32.517606 kcal Electronic energy + Delta-G solvation = -19122.229891 eV Core-core repulsion = 16357.911223 eV Total energy + Delta-G solvation = -2764.318667 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.86145 -36.41513 -34.92469 -33.86898 -31.42443 -30.81553 -29.07679 -27.15309 -26.50333 -23.57429 -22.21117 -21.52951 -20.66381 -19.40263 -17.07631 -16.04920 -15.63123 -15.32886 -14.66744 -14.57531 -13.98582 -13.75458 -13.62937 -13.25894 -12.84144 -12.63585 -12.37765 -11.99074 -11.77590 -11.67294 -11.44745 -11.28473 -11.21304 -10.97687 -10.89825 -10.69149 -10.60335 -10.36393 -10.29173 -10.08355 -9.88210 -9.71763 -9.43706 -8.61755 -8.21675 -7.10204 -5.90994 -3.26724 3.36791 3.44516 3.45814 4.08639 4.31239 4.41817 4.53546 4.97401 5.06374 5.10475 5.25177 5.29424 5.34283 5.40301 5.58226 5.66957 5.70567 5.76642 5.80267 5.90266 5.92303 6.02865 6.08731 6.10358 6.21257 6.35829 6.37029 6.50325 6.61310 6.76625 6.81269 7.05212 7.10357 7.18244 7.26506 7.51952 7.73294 8.20944 9.03107 9.23006 9.69944 10.14078 11.17935 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.006452 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.290525 B = 4339.033504 C = 5026.348469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.685 5.685 4 C 0.089 3.911 5 H 0.071 0.929 6 C -0.144 4.144 7 C -0.112 4.112 8 C -0.125 4.125 9 C 0.176 3.824 10 H 0.053 0.947 11 N -0.578 5.578 12 C -0.253 4.253 13 H 0.080 0.920 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.904 3.096 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.281 1.281 20 C 0.256 3.744 21 C 0.250 3.750 22 N -0.512 5.512 23 C -0.107 4.107 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.338 0.662 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.258 0.742 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 -10.882 -1.928 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.315 5.315 4 C -0.021 4.021 5 H 0.089 0.911 6 C -0.183 4.183 7 C -0.151 4.151 8 C -0.165 4.165 9 C 0.069 3.931 10 H 0.071 0.929 11 N -0.298 5.298 12 C -0.382 4.382 13 H 0.098 0.902 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.734 3.266 17 H -0.213 1.213 18 H -0.221 1.221 19 H -0.206 1.206 20 C 0.126 3.874 21 C -0.068 4.068 22 N -0.194 5.194 23 C -0.147 4.147 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.880 -10.877 -1.624 14.784 hybrid contribution -0.415 0.894 -1.222 1.570 sum -10.295 -9.984 -2.846 14.620 Atomic orbital electron populations 1.21771 0.95385 1.01290 1.02338 1.21925 0.95271 0.90298 1.00132 1.60659 1.08295 1.12671 1.49882 1.21651 0.86119 0.99582 0.94752 0.91103 1.22226 0.97201 1.00698 0.98147 1.21463 0.94573 0.98881 1.00218 1.21967 1.00491 0.95772 0.98223 1.20378 0.92315 0.88092 0.92363 0.92913 1.44153 1.55759 1.01728 1.28174 1.19156 1.11587 0.83744 1.23724 0.90182 1.24843 0.95002 0.98361 1.01440 1.69943 1.08580 1.27615 1.48558 0.86275 0.78544 0.83819 0.77995 1.21253 1.22071 1.20639 1.18367 0.78476 1.01699 0.88825 1.30650 0.95648 0.88753 0.91780 1.80811 1.14258 1.14077 1.10221 1.21875 0.96608 0.95054 1.01126 0.92601 0.91812 0.93028 0.95740 0.91276 0.84401 0.93274 0.91944 0.92681 0.92887 0.92671 0.91525 0.93174 0.86879 0.92481 0.91617 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.17 37.16 0.38 -0.93 16 2 C 0.05 0.54 6.20 -3.82 -0.02 0.52 16 3 N -0.69 -8.31 6.25 -106.72 -0.67 -8.97 16 4 C 0.09 1.18 2.47 -67.71 -0.17 1.02 16 5 H 0.07 0.94 7.80 -51.93 -0.41 0.54 16 6 C -0.14 -1.84 5.17 -26.73 -0.14 -1.98 16 7 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 8 C -0.13 -2.27 5.17 -26.73 -0.14 -2.41 16 9 C 0.18 3.21 2.62 -67.93 -0.18 3.03 16 10 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 11 N -0.58 -12.62 2.43 -168.97 -0.41 -13.03 16 12 C -0.25 -6.16 8.38 -15.06 -0.13 -6.29 16 13 H 0.08 1.94 6.89 -52.49 -0.36 1.57 16 14 C 0.00 0.05 4.84 -17.43 -0.08 -0.04 16 15 N -0.90 -24.57 9.52 55.49 0.53 -24.04 16 16 Si 0.90 20.71 29.61 -169.99 -5.03 15.67 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.26 5.46 5.35 -6.83 -0.04 5.42 16 21 C 0.25 6.00 13.74 -20.76 -0.29 5.71 16 22 N -0.51 -13.22 18.54 42.16 0.78 -12.44 16 23 C -0.11 -1.73 4.78 -26.73 -0.13 -1.85 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.24 7.43 -51.93 -0.39 -0.14 16 28 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 29 H 0.34 3.91 8.47 -39.29 -0.33 3.57 16 30 H 0.05 0.57 7.45 -51.93 -0.39 0.18 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.32 7.62 -51.93 -0.40 0.92 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.11 2.59 6.38 -51.93 -0.33 2.26 16 38 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 39 H 0.07 1.17 7.02 -51.93 -0.36 0.80 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -28.06 318.96 -7.81 -35.86 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.73 Total: 1.72 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.09 Total: 0.43 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.23 Total: -58.49 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.06 -7.81 -35.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712746174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.379 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds