Wall clock time and date at job start Mon Mar 30 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47308 * 2 1 4 4 C 1.46894 * 110.99971 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47175 * 324.99947 * 4 3 2 6 6 C 1.53002 * 109.47480 * 85.00151 * 4 3 2 7 7 C 1.52997 * 109.47239 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47176 * 299.99549 * 7 6 4 9 9 C 1.53009 * 109.46935 * 60.00101 * 8 7 6 10 10 H 1.08996 * 109.46950 * 59.99959 * 9 8 7 11 11 N 1.46500 * 109.47002 * 180.02562 * 9 8 7 12 12 C 1.36933 * 119.99993 * 60.00239 * 11 9 8 13 13 H 1.07995 * 120.00218 * 16.36331 * 12 11 9 14 14 C 1.38812 * 119.99817 * 196.36364 * 12 11 9 15 15 N 1.31625 * 120.00011 * 22.62760 * 14 12 11 16 16 Si 1.86798 * 120.00113 * 202.62534 * 14 12 11 17 17 H 1.48504 * 109.46854 * 85.76606 * 16 14 12 18 18 H 1.48494 * 109.47276 * 205.76561 * 16 14 12 19 19 H 1.48494 * 109.47361 * 325.76917 * 16 14 12 20 20 C 1.46507 * 119.99693 * 239.99921 * 11 9 8 21 21 C 1.47198 * 109.47044 * 84.00784 * 20 11 9 22 22 N 8.76157 * 152.23234 * 24.60225 * 2 1 3 23 23 C 1.52997 * 109.47106 * 299.99941 * 9 8 7 24 24 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47020 * 299.99889 * 1 2 3 26 26 H 1.09004 * 109.46751 * 60.00328 * 1 2 3 27 27 H 1.09002 * 109.47479 * 240.00223 * 2 1 3 28 28 H 1.09002 * 109.47284 * 120.00211 * 2 1 3 29 29 H 1.00903 * 110.99904 * 303.95316 * 3 2 1 30 30 H 1.08998 * 109.46617 * 300.00000 * 6 4 3 31 31 H 1.08996 * 109.47084 * 59.99739 * 6 4 3 32 32 H 1.08996 * 109.47230 * 59.99909 * 7 6 4 33 33 H 1.09002 * 109.46909 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47515 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47335 * 300.00296 * 8 7 6 36 36 H 0.96999 * 119.99858 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46790 * 204.00842 * 20 11 9 38 38 H 1.08997 * 109.47324 * 324.00991 * 20 11 9 39 39 H 1.08996 * 109.47230 * 299.99846 * 23 9 8 40 40 H 1.09002 * 109.46909 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8740 0.5923 0.5885 6 6 4.0008 1.3123 -1.4378 7 6 5.5302 1.3537 -1.4385 8 6 6.0049 2.6744 -0.8291 9 6 5.4922 2.7863 0.6082 10 1 5.8785 1.9547 1.1974 11 7 5.9462 4.0512 1.1915 12 6 5.5823 5.2397 0.6170 13 1 4.7647 5.2708 -0.0878 14 6 6.2644 6.4046 0.9406 15 7 7.4899 6.3390 1.4164 16 14 5.4432 8.0651 0.7008 17 1 4.6329 8.3945 1.9009 18 1 6.4824 9.1074 0.5038 19 1 4.5614 8.0135 -0.4929 20 6 6.7896 4.0444 2.3895 21 6 8.1964 3.8587 1.9981 22 7 9.2826 3.7113 1.6994 23 6 3.9628 2.7449 0.6088 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6442 1.9013 -0.7814 30 1 3.6622 0.3717 -1.8721 31 1 3.6149 2.1442 -2.0270 32 1 5.9164 0.5221 -0.8492 33 1 5.8954 1.2745 -2.4625 34 1 7.0944 2.7038 -0.8291 35 1 5.6187 3.5060 -1.4184 36 1 7.9667 7.1531 1.6421 37 1 6.6809 4.9928 2.9156 38 1 6.4840 3.2285 3.0444 39 1 3.5766 3.5765 0.0196 40 1 3.5977 2.8242 1.6328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712746174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:03 Heat of formation + Delta-G solvation = 16.174303 kcal Electronic energy + Delta-G solvation = -19122.938590 eV Core-core repulsion = 16357.911223 eV Total energy + Delta-G solvation = -2765.027366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14269 -37.91328 -36.45657 -35.45460 -33.15056 -31.85388 -30.55881 -28.44113 -28.09579 -25.23377 -23.06580 -22.79524 -21.95955 -20.83062 -18.86613 -17.66464 -17.21586 -16.39821 -16.09346 -15.62020 -15.56929 -15.33243 -14.85945 -14.49955 -14.10653 -14.00857 -13.92744 -13.51417 -13.18911 -13.11880 -12.86244 -12.71702 -12.58119 -12.40452 -12.24226 -12.05789 -11.99907 -11.90300 -11.83705 -11.69760 -11.39062 -11.14193 -10.95851 -10.48455 -9.15686 -8.93616 -7.87288 -5.21620 1.52919 1.56593 1.61878 2.29037 2.52868 2.63535 3.26533 3.35117 3.67120 3.91533 3.97238 4.13291 4.27552 4.30137 4.40103 4.50926 4.53851 4.68223 4.71076 4.77373 4.81087 4.84253 4.96290 5.04381 5.15242 5.19697 5.23663 5.28723 5.34733 5.38347 5.42492 5.45631 5.65686 5.73962 5.78263 6.27599 6.33805 6.61020 7.12227 7.33983 7.85882 8.25473 9.19726 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.006452 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.290525 B = 4339.033504 C = 5026.348469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.693 5.693 4 C 0.098 3.902 5 H 0.078 0.922 6 C -0.135 4.135 7 C -0.105 4.105 8 C -0.118 4.118 9 C 0.171 3.829 10 H 0.067 0.933 11 N -0.588 5.588 12 C -0.239 4.239 13 H 0.080 0.920 14 C -0.047 4.047 15 N -0.932 5.932 16 Si 0.957 3.043 17 H -0.282 1.282 18 H -0.310 1.310 19 H -0.276 1.276 20 C 0.255 3.745 21 C 0.262 3.738 22 N -0.552 5.552 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.342 0.658 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.043 0.957 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 -12.698 -2.214 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.324 5.324 4 C -0.012 4.012 5 H 0.097 0.903 6 C -0.174 4.174 7 C -0.144 4.144 8 C -0.157 4.157 9 C 0.065 3.935 10 H 0.086 0.914 11 N -0.308 5.308 12 C -0.369 4.369 13 H 0.098 0.902 14 C -0.242 4.242 15 N -0.579 5.579 16 Si 0.788 3.212 17 H -0.208 1.208 18 H -0.238 1.238 19 H -0.201 1.201 20 C 0.125 3.875 21 C -0.056 4.056 22 N -0.235 5.235 23 C -0.133 4.133 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.983 -12.722 -1.924 17.583 hybrid contribution 0.178 1.402 -1.158 1.827 sum -11.805 -11.321 -3.082 16.644 Atomic orbital electron populations 1.21739 0.94336 1.02232 1.02085 1.21981 0.96129 0.89017 1.00462 1.60595 1.07337 1.14149 1.50296 1.21470 0.87105 0.97793 0.94845 0.90332 1.22152 0.95679 1.01697 0.97891 1.21396 0.95827 0.96645 1.00506 1.21844 0.98144 0.97437 0.98276 1.20614 0.93748 0.86876 0.92272 0.91442 1.44406 1.55405 1.02400 1.28584 1.19354 1.10543 0.84661 1.22309 0.90199 1.25381 0.95430 1.00796 1.02576 1.70082 1.09735 1.27226 1.50893 0.85422 0.77232 0.80547 0.78046 1.20817 1.23794 1.20087 1.18622 0.77069 1.02723 0.89137 1.31282 0.96041 0.87525 0.90727 1.80799 1.15518 1.15583 1.11553 1.21676 0.94592 0.96302 1.00731 0.91090 0.92639 0.92707 0.94920 0.91333 0.84025 0.90995 0.92457 0.91446 0.92091 0.96065 0.93796 0.94390 0.88405 0.87815 0.93516 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.17 71.98 0.73 -1.40 16 2 C 0.05 0.91 6.20 86.30 0.54 1.45 16 3 N -0.69 -14.88 6.25 -491.56 -3.07 -17.95 16 4 C 0.10 2.33 2.47 44.92 0.11 2.44 16 5 H 0.08 1.80 7.80 -2.39 -0.02 1.78 16 6 C -0.14 -3.05 5.17 30.59 0.16 -2.89 16 7 C -0.10 -2.76 5.92 30.59 0.18 -2.58 16 8 C -0.12 -4.20 5.17 30.60 0.16 -4.04 16 9 C 0.17 6.00 2.62 44.99 0.12 6.12 16 10 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 11 N -0.59 -25.31 2.43 -688.50 -1.67 -26.98 16 12 C -0.24 -11.59 8.38 84.03 0.70 -10.88 16 13 H 0.08 3.84 6.89 -2.91 -0.02 3.82 16 14 C -0.05 -2.42 4.84 84.86 0.41 -2.01 16 15 N -0.93 -51.69 9.52 21.65 0.21 -51.48 16 16 Si 0.96 43.03 29.61 68.60 2.03 45.06 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.25 10.63 5.35 84.57 0.45 11.08 16 21 C 0.26 12.57 13.74 89.44 1.23 13.80 16 22 N -0.55 -28.83 18.54 20.01 0.37 -28.45 16 23 C -0.09 -2.85 4.78 30.60 0.15 -2.70 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.03 0.52 7.43 -2.39 -0.02 0.50 16 28 H 0.07 1.20 8.06 -2.39 -0.02 1.18 16 29 H 0.34 7.00 8.47 -89.69 -0.76 6.24 16 30 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 31 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 1.74 7.62 -2.39 -0.02 1.72 16 36 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.10 4.47 6.38 -2.39 -0.02 4.46 16 38 H 0.10 3.36 8.05 -2.39 -0.02 3.34 16 39 H 0.05 1.60 7.02 -2.39 -0.02 1.58 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -60.53 318.96 3.05 -57.48 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.25 Total: 13.94 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.94 Total: 8.38 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -4.17 Total: -124.87 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -60.53 3.05 -57.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712746174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.655 kcal (2) G-P(sol) polarization free energy of solvation -60.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds