Wall clock time and date at job start Mon Mar 30 2020 04:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46768 * 2 1 4 4 C 1.52997 * 109.46908 * 240.00427 * 2 1 3 5 5 C 1.50705 * 109.47326 * 59.99627 * 4 2 1 6 6 H 1.07995 * 119.99776 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99641 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99539 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00462 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47032 * 89.99588 * 9 7 5 11 11 H 1.48497 * 109.47054 * 209.99465 * 9 7 5 12 12 H 1.48496 * 109.46840 * 329.99678 * 9 7 5 13 13 C 1.52995 * 109.47122 * 120.00046 * 2 1 3 14 14 N 1.46894 * 109.47250 * 300.00016 * 13 2 1 15 15 C 1.46902 * 110.99835 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47186 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47228 * 180.02562 * 16 15 14 18 18 C 1.39873 * 125.89958 * 125.00032 * 17 16 15 19 19 C 1.35316 * 107.91987 * 180.02562 * 18 17 16 20 20 N 1.34943 * 107.74531 * 0.02562 * 19 18 17 21 21 H 0.97009 * 126.03442 * 180.26020 * 20 19 18 22 22 N 1.30832 * 125.89875 * 305.02172 * 17 16 15 23 23 H 1.09000 * 109.46757 * 299.99366 * 1 2 3 24 24 H 1.08996 * 109.46971 * 59.99807 * 1 2 3 25 25 H 1.08998 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46852 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47490 * 300.00404 * 3 2 1 28 28 H 1.08995 * 109.47062 * 60.00294 * 3 2 1 29 29 H 1.09000 * 109.47112 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.47028 * 299.99693 * 4 2 1 31 31 H 0.96998 * 120.00366 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46834 * 179.97438 * 13 2 1 33 33 H 1.08998 * 109.47109 * 60.00126 * 13 2 1 34 34 H 1.00898 * 111.00094 * 56.04679 * 14 13 2 35 35 H 1.09001 * 109.47071 * 59.99846 * 15 14 13 36 36 H 1.08999 * 109.47242 * 300.00110 * 15 14 13 37 37 H 1.09001 * 109.47385 * 59.99862 * 16 15 14 38 38 H 1.09009 * 109.47013 * 300.00109 * 16 15 14 39 39 H 1.07997 * 126.03616 * 359.97438 * 18 17 16 40 40 H 1.07996 * 126.12469 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4331 0.1388 -4.8058 9 14 2.9451 -2.0002 -3.9035 10 1 2.0865 -3.2109 -3.9494 11 1 3.7373 -1.9073 -5.1561 12 1 3.8651 -2.0896 -2.7413 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6946 3.6702 16 6 1.4924 0.0531 4.8955 17 6 1.9767 -0.6295 6.1487 18 6 2.6850 -0.0234 7.1914 19 6 2.9351 -0.9670 8.1285 20 7 2.4044 -2.1291 7.6939 21 1 2.4279 -2.9779 8.1630 22 7 1.8075 -1.8916 6.4491 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6767 -1.7488 -1.2493 31 1 1.6673 -0.1925 -5.6868 32 1 3.1301 -0.7216 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 0.5439 0.0413 2.4401 35 1 3.1119 -0.6941 3.6867 36 1 1.6589 -1.7223 3.6872 37 1 0.4025 0.0522 4.8788 38 1 1.8551 1.0810 4.8787 39 1 2.9808 1.0141 7.2396 40 1 3.4653 -0.8171 9.0573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714507435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:50 Heat of formation + Delta-G solvation = 53.703643 kcal Electronic energy + Delta-G solvation = -18010.527628 eV Core-core repulsion = 15247.127656 eV Total energy + Delta-G solvation = -2763.399972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35048 -37.79964 -35.24787 -32.81090 -31.89247 -30.17281 -29.06207 -27.46784 -26.31036 -25.12347 -23.00977 -21.73284 -21.34537 -19.76617 -18.37902 -17.73869 -16.74134 -15.63970 -15.20726 -14.70453 -14.22690 -14.15041 -13.82484 -13.73638 -13.49823 -13.10279 -12.60045 -12.33575 -12.22634 -11.96240 -11.62151 -11.39841 -11.01807 -10.90272 -10.80552 -10.68138 -10.43096 -10.26679 -9.75547 -9.63751 -9.58247 -9.21800 -8.96912 -8.84363 -8.45462 -8.08342 -5.95919 -3.91695 1.65937 2.56102 2.65501 3.35567 3.43139 3.47464 4.28211 4.52389 4.56500 4.69770 5.14879 5.17333 5.34523 5.37472 5.52601 5.61986 5.66273 5.72237 5.79086 5.93020 6.04637 6.06388 6.23549 6.32471 6.43844 6.49161 6.66068 6.75696 6.86419 7.02313 7.14192 7.20220 7.24801 7.36270 7.39609 7.46533 7.52951 7.71100 7.90260 8.64527 9.10363 9.67503 11.17271 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.043554 B = 0.003520 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.725652 B = 7952.205225 C = 8278.887842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.117 4.117 4 C -0.005 4.005 5 C -0.505 4.505 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.266 1.266 13 C 0.068 3.932 14 N -0.686 5.686 15 C 0.065 3.935 16 C -0.038 4.038 17 C 0.085 3.915 18 C -0.268 4.268 19 C 0.053 3.947 20 N -0.482 5.482 21 H 0.437 0.563 22 N -0.293 5.293 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.339 0.661 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -1.768 25.289 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.050 4.050 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.543 4.543 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.060 4.060 14 N -0.318 5.318 15 C -0.065 4.065 16 C -0.078 4.078 17 C -0.083 4.083 18 C -0.297 4.297 19 C -0.094 4.094 20 N -0.190 5.190 21 H 0.281 0.719 22 N -0.116 5.116 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.158 0.842 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.166 0.834 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.171 -2.406 24.724 24.935 hybrid contribution 0.514 -1.416 0.409 1.561 sum 2.685 -3.822 25.133 25.563 Atomic orbital electron populations 1.21785 0.95616 1.00454 1.00959 1.20423 0.95087 0.96205 0.93251 1.21608 0.99656 0.95489 1.00703 1.19636 0.96036 0.95250 0.93366 1.21152 1.31350 1.13155 0.88687 0.90388 1.25017 0.95827 0.96748 0.96038 1.69910 1.46278 1.40652 0.97804 0.86849 0.81336 0.84014 0.77484 1.20539 1.21582 1.19121 1.22114 0.99730 0.94678 0.89518 1.60529 1.16409 1.53762 1.01131 1.21840 1.00410 0.95341 0.88923 1.20034 1.00836 0.99071 0.87841 1.22386 0.97527 0.91263 0.97121 1.21513 1.10649 1.01377 0.96188 1.22588 0.99764 0.86591 1.00453 1.46376 1.45276 1.10631 1.16681 0.71924 1.77335 1.20074 1.17451 0.96787 0.94483 0.91196 0.94184 0.94259 0.92188 0.93574 0.96717 0.97413 0.92932 0.91655 0.95927 0.84175 0.91280 0.95035 0.90302 0.88930 0.83389 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 2 C -0.05 -0.97 0.60 -154.51 -0.09 -1.06 16 3 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 4 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 5 C -0.51 -14.13 8.20 -34.44 -0.28 -14.41 16 6 H 0.08 2.32 5.92 -52.49 -0.31 2.01 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.08 13.96 55.43 0.77 -27.30 16 9 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 C 0.07 1.17 4.65 -3.83 -0.02 1.15 16 14 N -0.69 -9.83 5.71 -113.78 -0.65 -10.48 16 15 C 0.07 0.83 5.64 -3.82 -0.02 0.81 16 16 C -0.04 -0.41 6.05 -27.88 -0.17 -0.58 16 17 C 0.08 0.96 6.49 -82.41 -0.53 0.43 16 18 C -0.27 -2.48 10.72 -40.01 -0.43 -2.91 16 19 C 0.05 0.39 11.99 -17.23 -0.21 0.18 16 20 N -0.48 -4.09 7.36 30.44 0.22 -3.87 16 21 H 0.44 2.27 8.96 -182.60 -1.64 0.64 16 22 N -0.29 -3.57 12.67 33.67 0.43 -3.14 16 23 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 24 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.05 0.80 7.60 -51.93 -0.39 0.40 16 29 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.62 6.77 -39.29 -0.27 4.35 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.92 8.12 -51.92 -0.42 0.49 16 39 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -32.57 320.18 -8.21 -40.78 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.80 Total: 0.72 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.35 Total: -18.95 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.77 Total: -44.80 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.57 -8.21 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714507435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.485 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds