Wall clock time and date at job start Mon Mar 30 2020 03:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99658 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.47258 * 60.00321 * 3 2 1 7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99778 * 160.56149 * 7 2 1 9 9 N 1.36937 * 120.00115 * 340.55402 * 7 2 1 10 10 C 1.46495 * 119.99750 * 320.40700 * 9 7 2 11 11 C 1.53005 * 109.47340 * 269.99881 * 10 9 7 12 12 H 1.09004 * 110.32529 * 307.24866 * 11 10 9 13 13 C 1.54480 * 110.37413 * 185.00420 * 11 10 9 14 14 C 1.54504 * 104.06174 * 217.18817 * 13 11 10 15 15 C 1.54484 * 104.06510 * 0.02562 * 14 13 11 16 16 H 1.09005 * 110.36953 * 265.03888 * 15 14 13 17 17 C 1.52991 * 110.37437 * 142.81010 * 15 14 13 18 18 C 1.53006 * 117.49894 * 248.62202 * 17 15 14 19 19 C 1.53006 * 60.00005 * 252.51117 * 18 17 15 20 20 O 1.44422 * 110.37350 * 69.61876 * 11 10 9 21 21 C 1.46493 * 120.00011 * 140.40560 * 9 7 2 22 22 C 1.53005 * 117.50175 * 3.28959 * 21 9 7 23 23 C 1.52997 * 117.49919 * 294.66599 * 21 9 7 24 24 H 0.97000 * 120.00354 * 355.01078 * 1 2 3 25 25 H 1.09004 * 109.47586 * 29.99763 * 10 9 7 26 26 H 1.09007 * 109.47171 * 149.99699 * 10 9 7 27 27 H 1.09007 * 110.50854 * 335.83264 * 13 11 10 28 28 H 1.09003 * 110.51330 * 98.40406 * 13 11 10 29 29 H 1.09001 * 110.51291 * 118.63920 * 14 13 11 30 30 H 1.08997 * 110.51591 * 241.21522 * 14 13 11 31 31 H 1.09000 * 115.55359 * 34.32579 * 17 15 14 32 32 H 1.09004 * 117.49602 * 359.97438 * 18 17 15 33 33 H 1.08994 * 117.49816 * 145.02265 * 18 17 15 34 34 H 1.09001 * 117.49530 * 252.51083 * 19 18 17 35 35 H 1.08999 * 117.50139 * 107.48774 * 19 18 17 36 36 H 1.09005 * 115.54854 * 148.99650 * 21 9 7 37 37 H 1.08997 * 117.49580 * 359.97438 * 22 21 9 38 38 H 1.08999 * 117.49872 * 145.01977 * 22 21 9 39 39 H 1.09005 * 117.50221 * 214.98257 * 23 21 9 40 40 H 1.08995 * 117.50128 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0441 -1.2285 -0.3118 9 7 1.3842 -2.3544 0.3938 10 6 0.4599 -2.3338 1.5301 11 6 1.2321 -2.6147 2.8208 12 1 1.8145 -3.5308 2.7218 13 6 0.2600 -2.7221 4.0166 14 6 1.0263 -2.0607 5.1839 15 6 2.3705 -1.6314 4.5552 16 1 3.1298 -2.3950 4.7248 17 6 2.8258 -0.2909 5.1351 18 6 2.8177 0.9217 4.2020 19 6 4.1457 0.2888 4.6226 20 8 2.0932 -1.5013 3.1441 21 6 1.6388 -3.6076 -0.3208 22 6 2.6717 -3.5803 -1.4492 23 6 1.1820 -3.6951 -1.7784 24 1 -0.4850 0.8368 0.0731 25 1 -0.0134 -1.3541 1.5959 26 1 -0.3047 -3.0980 1.3905 27 1 -0.6623 -2.1793 3.8090 28 1 0.0449 -3.7668 4.2414 29 1 0.4830 -1.1910 5.5534 30 1 1.1898 -2.7778 5.9884 31 1 2.5749 -0.1221 6.1823 32 1 2.4885 0.7642 3.1749 33 1 2.5615 1.8884 4.6354 34 1 4.7630 0.8392 5.3326 35 1 4.6898 -0.2850 3.8723 36 1 1.5751 -4.5137 0.2818 37 1 3.1616 -2.6297 -1.6601 38 1 3.2880 -4.4684 -1.5890 39 1 0.8181 -4.6588 -2.1349 40 1 0.6917 -2.8203 -2.2055 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715423962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:53 Heat of formation + Delta-G solvation = 25.950313 kcal Electronic energy + Delta-G solvation = -19734.397387 eV Core-core repulsion = 16937.501189 eV Total energy + Delta-G solvation = -2796.896198 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.15651 -36.91876 -35.94878 -33.30388 -31.49212 -30.87465 -28.65775 -25.46331 -23.63816 -22.04785 -21.67656 -21.27069 -20.34212 -19.81237 -19.54471 -16.40662 -15.69196 -15.48008 -15.18387 -14.85466 -14.50126 -14.18782 -13.60813 -13.26774 -12.89106 -12.41564 -11.86769 -11.70309 -11.28168 -11.22932 -11.10142 -11.01101 -10.80241 -10.59865 -10.52071 -10.37919 -10.22842 -9.95224 -9.78558 -9.66234 -9.57743 -9.52393 -9.17924 -8.85494 -8.33202 -6.41104 -5.65282 -3.29978 3.43710 3.51934 3.56167 4.15213 4.49346 4.59466 4.92994 5.02471 5.16372 5.26734 5.29140 5.39062 5.42169 5.48559 5.64614 5.83345 5.89926 5.94353 5.98243 6.01731 6.10829 6.17568 6.21370 6.31506 6.33621 6.43352 6.50278 6.55703 6.60438 6.65393 6.75931 6.78072 6.88813 7.12180 7.30560 7.63789 7.84840 7.93062 8.63288 9.27257 9.89484 10.46088 11.30932 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.010105 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.435479 B = 2770.354751 C = 3676.037708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.021 3.979 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.238 4.238 8 H 0.059 0.941 9 N -0.547 5.547 10 C 0.155 3.845 11 C 0.062 3.938 12 H 0.047 0.953 13 C -0.151 4.151 14 C -0.144 4.144 15 C 0.095 3.905 16 H 0.059 0.941 17 C -0.154 4.154 18 C -0.164 4.164 19 C -0.179 4.179 20 O -0.328 6.328 21 C 0.120 3.880 22 C -0.195 4.195 23 C -0.222 4.222 24 H 0.251 0.749 25 H 0.103 0.897 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -4.217 9.261 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.368 4.368 8 H 0.076 0.924 9 N -0.263 5.263 10 C 0.028 3.972 11 C 0.001 3.999 12 H 0.065 0.935 13 C -0.189 4.189 14 C -0.182 4.182 15 C 0.036 3.964 16 H 0.076 0.924 17 C -0.172 4.172 18 C -0.201 4.201 19 C -0.216 4.216 20 O -0.246 6.246 21 C 0.011 3.989 22 C -0.233 4.233 23 C -0.263 4.263 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.431 -3.884 9.056 10.149 hybrid contribution 0.361 0.686 0.236 0.810 sum 2.792 -3.198 9.292 10.215 Atomic orbital electron populations 1.70033 1.05511 1.25768 1.51861 1.25074 0.94836 0.98419 0.99526 0.86456 0.80040 0.84490 0.77097 1.20064 1.22193 1.21079 1.18875 0.92742 0.84828 1.40347 0.92357 1.43284 1.50372 1.03260 1.29337 1.21016 0.90275 1.03273 0.82621 1.23885 0.90390 0.89117 0.96479 0.93514 1.22975 1.00251 1.00277 0.95439 1.22889 0.96787 1.00434 0.98079 1.22326 0.95253 0.94340 0.84442 0.92358 1.22276 1.02053 0.94573 0.98285 1.22944 1.00054 0.95116 1.02017 1.22903 0.90732 1.04446 1.03539 1.89408 1.68020 1.47086 1.20126 1.21230 1.00667 0.90680 0.86367 1.22998 0.92129 1.01734 1.06486 1.23350 0.96877 1.00853 1.05187 0.93869 0.87900 0.94281 0.90792 0.91736 0.91142 0.91685 0.87748 0.86617 0.89850 0.89609 0.88587 0.89915 0.88485 0.90971 0.91427 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 11.49 55.49 0.64 -24.91 16 2 C 0.02 0.59 4.99 -17.44 -0.09 0.50 16 3 Si 0.89 22.17 29.58 -169.99 -5.03 17.15 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.49 8.21 -15.06 -0.12 -6.61 16 8 H 0.06 1.64 6.75 -52.48 -0.35 1.29 16 9 N -0.55 -13.54 2.75 -165.66 -0.45 -14.00 16 10 C 0.15 3.56 4.95 -4.04 -0.02 3.54 16 11 C 0.06 1.21 3.53 -25.95 -0.09 1.12 16 12 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 13 C -0.15 -2.41 6.63 -25.17 -0.17 -2.58 16 14 C -0.14 -2.10 6.63 -25.16 -0.17 -2.27 16 15 C 0.09 1.59 3.64 -25.96 -0.09 1.50 16 16 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 17 C -0.15 -2.39 5.60 -90.62 -0.51 -2.90 16 18 C -0.16 -2.90 9.89 -26.72 -0.26 -3.17 16 19 C -0.18 -2.78 10.24 -26.72 -0.27 -3.05 16 20 O -0.33 -6.98 9.21 -35.23 -0.32 -7.30 16 21 C 0.12 2.61 6.56 -67.93 -0.45 2.16 16 22 C -0.20 -3.98 9.80 -26.73 -0.26 -4.24 16 23 C -0.22 -4.63 10.36 -26.73 -0.28 -4.91 16 24 H 0.25 7.02 8.32 -40.82 -0.34 6.68 16 25 H 0.10 2.72 5.59 -51.93 -0.29 2.43 16 26 H 0.04 0.84 8.07 -51.92 -0.42 0.43 16 27 H 0.07 1.22 7.87 -51.92 -0.41 0.81 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.37 8.13 -51.93 -0.42 0.95 16 32 H 0.12 2.53 7.05 -51.93 -0.37 2.16 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.10 2.17 6.47 -51.93 -0.34 1.83 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -28.90 321.06 -9.90 -38.80 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.79 Total: 6.32 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.78 Total: -20.91 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.18 Total: -38.91 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.32 Total: -7.30 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.90 -9.90 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715423962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.753 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds