Wall clock time and date at job start Mon Mar 30 2020 04:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47313 * 2 1 4 4 H 1.09000 * 109.46609 * 303.19145 * 3 2 1 5 5 C 1.50692 * 109.47227 * 183.18906 * 3 2 1 6 6 H 1.08001 * 119.99700 * 239.99984 * 5 3 2 7 7 C 1.37882 * 120.00157 * 59.72377 * 5 3 2 8 8 N 1.31511 * 119.99979 * 0.27102 * 7 5 3 9 9 Si 1.86803 * 119.99758 * 180.27580 * 7 5 3 10 10 H 1.48495 * 109.47181 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47068 * 119.99942 * 9 7 5 12 12 H 1.48503 * 109.46885 * 239.99521 * 9 7 5 13 13 N 1.46894 * 109.46811 * 63.18361 * 3 2 1 14 14 C 1.46904 * 110.99982 * 67.13554 * 13 3 2 15 15 C 1.46907 * 110.99651 * 191.08253 * 13 3 2 16 16 C 1.50700 * 109.46841 * 75.86953 * 15 13 3 17 17 C 1.35317 * 126.03715 * 254.96480 * 16 15 13 18 18 N 1.34950 * 107.74625 * 179.87332 * 17 16 15 19 19 C 1.46497 * 126.03684 * 180.14650 * 18 17 16 20 20 N 1.40084 * 107.92168 * 0.39033 * 18 17 16 21 21 C 1.30834 * 108.20603 * 359.75516 * 20 18 17 22 22 C 1.50708 * 125.89583 * 179.97438 * 21 20 18 23 23 H 1.08997 * 109.46986 * 64.17286 * 1 2 3 24 24 H 1.09002 * 109.46961 * 184.16632 * 1 2 3 25 25 H 1.08995 * 109.46872 * 304.16593 * 1 2 3 26 26 H 1.09000 * 109.47640 * 239.99540 * 2 1 3 27 27 H 1.09000 * 109.47343 * 119.99581 * 2 1 3 28 28 H 0.97003 * 119.99705 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47353 * 65.14256 * 14 13 3 30 30 H 1.08999 * 109.47088 * 185.14574 * 14 13 3 31 31 H 1.08994 * 109.46858 * 305.14396 * 14 13 3 32 32 H 1.09003 * 109.46889 * 195.86581 * 15 13 3 33 33 H 1.08999 * 109.47000 * 315.86616 * 15 13 3 34 34 H 1.07999 * 126.12491 * 0.02562 * 17 16 15 35 35 H 1.09002 * 109.46995 * 270.25827 * 19 18 17 36 36 H 1.08998 * 109.47357 * 30.26081 * 19 18 17 37 37 H 1.08999 * 109.46831 * 150.26576 * 19 18 17 38 38 H 1.08996 * 109.46890 * 274.48340 * 22 21 20 39 39 H 1.09003 * 109.47326 * 34.48314 * 22 21 20 40 40 H 1.08998 * 109.46939 * 154.48476 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6307 1.9725 -0.8600 5 6 3.5449 1.4432 -0.0790 6 1 4.1268 1.8961 0.7101 7 6 4.1790 0.8608 -1.1560 8 7 3.4704 0.3093 -2.1168 9 14 6.0447 0.8549 -1.2500 10 1 6.6028 1.5343 -0.0534 11 1 6.5335 -0.5465 -1.2973 12 1 6.4807 1.5728 -2.4747 13 7 1.6142 2.1124 1.2360 14 6 2.2818 1.5295 2.4076 15 6 1.8536 3.5598 1.1597 16 6 0.8064 4.1965 0.2828 17 6 0.9899 4.6404 -0.9823 18 7 -0.1864 5.1376 -1.4185 19 6 -0.4392 5.7207 -2.7384 20 7 -1.1215 5.0028 -0.3842 21 6 -0.5254 4.4387 0.6348 22 6 -1.1635 4.1076 1.9594 23 1 -0.3633 0.4477 -0.9250 24 1 -0.3633 -1.0250 0.0747 25 1 -0.3633 0.5771 0.8503 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9165 -0.1008 -2.8743 29 1 3.3532 1.7214 2.3482 30 1 1.8817 1.9806 3.3156 31 1 2.1060 0.4541 2.4282 32 1 1.8006 3.9901 2.1598 33 1 2.8416 3.7428 0.7372 34 1 1.9119 4.6012 -1.5433 35 1 -0.2391 6.7917 -2.7069 36 1 0.2132 5.2507 -3.4743 37 1 -1.4799 5.5536 -3.0161 38 1 -1.1243 4.9812 2.6100 39 1 -2.2027 3.8195 1.8002 40 1 -0.6252 3.2826 2.4259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716390354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:45 Heat of formation + Delta-G solvation = 77.063985 kcal Electronic energy + Delta-G solvation = -19538.616899 eV Core-core repulsion = 16776.229908 eV Total energy + Delta-G solvation = -2762.386991 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69594 -37.08313 -33.68778 -32.64425 -31.27556 -30.10961 -29.06723 -26.71891 -26.37878 -24.42313 -23.55260 -21.72923 -20.09746 -19.25459 -18.54153 -16.45458 -15.90889 -15.20813 -14.95001 -14.19217 -13.92126 -13.63747 -13.48925 -13.08676 -12.88559 -12.55878 -12.39044 -11.96634 -11.78002 -11.76515 -11.59767 -11.40469 -11.12917 -10.88215 -10.75465 -10.56116 -10.45270 -10.04370 -9.88896 -9.58497 -9.37836 -8.99029 -8.66750 -8.32617 -7.74754 -6.98502 -5.95232 -4.08468 2.40769 2.97758 3.24706 3.33474 3.34065 3.37016 4.40378 4.85921 5.27573 5.31601 5.34814 5.42153 5.51819 5.55743 5.79467 5.94649 6.03134 6.18631 6.27221 6.38921 6.43406 6.47283 6.54748 6.59215 6.69128 6.78567 6.86103 6.88295 7.21408 7.25974 7.30556 7.46894 7.54418 7.69238 7.82680 8.07865 8.23116 8.27084 8.41829 8.58478 9.04368 9.58528 11.03012 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.007853 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.187012 B = 3564.884050 C = 4066.141841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.039 0.961 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.534 5.534 14 C 0.035 3.965 15 C 0.134 3.866 16 C -0.203 4.203 17 C 0.063 3.937 18 N -0.386 5.386 19 C 0.109 3.891 20 N -0.316 5.316 21 C 0.090 3.910 22 C -0.067 4.067 23 H 0.033 0.967 24 H 0.022 0.978 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.259 0.741 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.170 0.830 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 7.439 2.865 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.057 0.943 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.257 5.257 14 C -0.114 4.114 15 C 0.005 3.995 16 C -0.214 4.214 17 C -0.083 4.083 18 N -0.168 5.168 19 C -0.033 4.033 20 N -0.139 5.139 21 C -0.076 4.076 22 C -0.126 4.126 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.187 0.813 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.941 7.812 2.135 10.665 hybrid contribution 2.836 -0.329 -0.287 2.869 sum -4.105 7.482 1.847 8.732 Atomic orbital electron populations 1.21684 0.98963 0.98159 1.00526 1.21580 0.92122 0.99451 1.01682 1.19212 0.92239 0.90827 0.86735 0.94341 1.21834 0.93003 1.37007 1.05983 0.92475 1.24902 0.97601 0.95260 0.95698 1.69902 1.34632 1.37995 1.09891 0.86686 0.86641 0.77712 0.77819 1.19963 1.21078 1.21196 1.62441 1.57009 1.01471 1.04811 1.22177 0.97089 0.99829 0.92307 1.20130 0.94286 0.89107 0.95987 1.19920 0.95855 1.09671 0.95950 1.22382 0.90987 0.98862 0.96048 1.48170 1.07483 1.49029 1.12160 1.21698 1.03592 0.98065 0.79970 1.77142 1.15085 1.25235 0.96466 1.22111 0.93013 0.97004 0.95496 1.20119 1.00128 1.01879 0.90481 0.94755 0.95894 0.93028 0.89314 0.95012 0.93119 0.95418 0.94347 0.92133 0.92549 0.93525 0.81311 0.91575 0.89760 0.89900 0.91688 0.91780 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.84 37.16 0.37 -2.53 16 2 C -0.11 -2.63 5.14 -26.73 -0.14 -2.77 16 3 C 0.22 5.22 1.63 -68.87 -0.11 5.11 16 4 H 0.04 1.05 7.05 -51.93 -0.37 0.68 16 5 C -0.54 -14.00 6.95 -34.44 -0.24 -14.24 16 6 H 0.06 1.49 5.98 -52.49 -0.31 1.18 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.53 -11.03 3.92 -237.73 -0.93 -11.96 16 14 C 0.03 0.66 8.82 60.07 0.53 1.19 16 15 C 0.13 2.57 4.93 -4.97 -0.02 2.55 16 16 C -0.20 -3.83 4.97 -105.06 -0.52 -4.35 16 17 C 0.06 1.14 10.94 -17.22 -0.19 0.95 16 18 N -0.39 -6.54 4.01 -68.16 -0.27 -6.81 16 19 C 0.11 1.29 11.47 59.85 0.69 1.97 16 20 N -0.32 -5.86 12.58 33.67 0.42 -5.44 16 21 C 0.09 1.63 7.22 -82.41 -0.59 1.04 16 22 C -0.07 -0.99 10.30 36.01 0.37 -0.62 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.06 7.58 -51.93 -0.39 0.67 16 26 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 27 H 0.03 0.74 6.35 -51.93 -0.33 0.41 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.03 0.56 6.28 -51.93 -0.33 0.24 16 30 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.06 1.19 6.24 -51.93 -0.32 0.86 16 32 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 33 H 0.05 0.97 6.97 -51.93 -0.36 0.61 16 34 H 0.17 2.89 8.06 -52.49 -0.42 2.46 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.31 7.85 -51.93 -0.41 0.90 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -29.66 319.79 -6.80 -36.46 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.48 Total: 1.13 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 0.04 Total: -10.00 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.16 Total: -48.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.66 -6.80 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716390354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.527 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds