Wall clock time and date at job start Mon Mar 30 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47313 * 2 1 4 4 H 1.09000 * 109.46609 * 303.19145 * 3 2 1 5 5 C 1.50692 * 109.47227 * 183.18906 * 3 2 1 6 6 H 1.08001 * 119.99700 * 239.99984 * 5 3 2 7 7 C 1.37882 * 120.00157 * 59.72377 * 5 3 2 8 8 N 1.31511 * 119.99979 * 0.27102 * 7 5 3 9 9 Si 1.86803 * 119.99758 * 180.27580 * 7 5 3 10 10 H 1.48495 * 109.47181 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47068 * 119.99942 * 9 7 5 12 12 H 1.48503 * 109.46885 * 239.99521 * 9 7 5 13 13 N 1.46894 * 109.46811 * 63.18361 * 3 2 1 14 14 C 1.46904 * 110.99982 * 67.13554 * 13 3 2 15 15 C 1.46907 * 110.99651 * 191.08253 * 13 3 2 16 16 C 1.50700 * 109.46841 * 75.86953 * 15 13 3 17 17 C 1.35317 * 126.03715 * 254.96480 * 16 15 13 18 18 N 1.34950 * 107.74625 * 179.87332 * 17 16 15 19 19 C 1.46497 * 126.03684 * 180.14650 * 18 17 16 20 20 N 1.40084 * 107.92168 * 0.39033 * 18 17 16 21 21 C 1.30834 * 108.20603 * 359.75516 * 20 18 17 22 22 C 1.50708 * 125.89583 * 179.97438 * 21 20 18 23 23 H 1.08997 * 109.46986 * 64.17286 * 1 2 3 24 24 H 1.09002 * 109.46961 * 184.16632 * 1 2 3 25 25 H 1.08995 * 109.46872 * 304.16593 * 1 2 3 26 26 H 1.09000 * 109.47640 * 239.99540 * 2 1 3 27 27 H 1.09000 * 109.47343 * 119.99581 * 2 1 3 28 28 H 0.97003 * 119.99705 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47353 * 65.14256 * 14 13 3 30 30 H 1.08999 * 109.47088 * 185.14574 * 14 13 3 31 31 H 1.08994 * 109.46858 * 305.14396 * 14 13 3 32 32 H 1.09003 * 109.46889 * 195.86581 * 15 13 3 33 33 H 1.08999 * 109.47000 * 315.86616 * 15 13 3 34 34 H 1.07999 * 126.12491 * 0.02562 * 17 16 15 35 35 H 1.09002 * 109.46995 * 270.25827 * 19 18 17 36 36 H 1.08998 * 109.47357 * 30.26081 * 19 18 17 37 37 H 1.08999 * 109.46831 * 150.26576 * 19 18 17 38 38 H 1.08996 * 109.46890 * 274.48340 * 22 21 20 39 39 H 1.09003 * 109.47326 * 34.48314 * 22 21 20 40 40 H 1.08998 * 109.46939 * 154.48476 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6307 1.9725 -0.8600 5 6 3.5449 1.4432 -0.0790 6 1 4.1268 1.8961 0.7101 7 6 4.1790 0.8608 -1.1560 8 7 3.4704 0.3093 -2.1168 9 14 6.0447 0.8549 -1.2500 10 1 6.6028 1.5343 -0.0534 11 1 6.5335 -0.5465 -1.2973 12 1 6.4807 1.5728 -2.4747 13 7 1.6142 2.1124 1.2360 14 6 2.2818 1.5295 2.4076 15 6 1.8536 3.5598 1.1597 16 6 0.8064 4.1965 0.2828 17 6 0.9899 4.6404 -0.9823 18 7 -0.1864 5.1376 -1.4185 19 6 -0.4392 5.7207 -2.7384 20 7 -1.1215 5.0028 -0.3842 21 6 -0.5254 4.4387 0.6348 22 6 -1.1635 4.1076 1.9594 23 1 -0.3633 0.4477 -0.9250 24 1 -0.3633 -1.0250 0.0747 25 1 -0.3633 0.5771 0.8503 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9165 -0.1008 -2.8743 29 1 3.3532 1.7214 2.3482 30 1 1.8817 1.9806 3.3156 31 1 2.1060 0.4541 2.4282 32 1 1.8006 3.9901 2.1598 33 1 2.8416 3.7428 0.7372 34 1 1.9119 4.6012 -1.5433 35 1 -0.2391 6.7917 -2.7069 36 1 0.2132 5.2507 -3.4743 37 1 -1.4799 5.5536 -3.0161 38 1 -1.1243 4.9812 2.6100 39 1 -2.2027 3.8195 1.8002 40 1 -0.6252 3.2826 2.4259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716390354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:44 Heat of formation + Delta-G solvation = 59.355716 kcal Electronic energy + Delta-G solvation = -19539.384787 eV Core-core repulsion = 16776.229908 eV Total energy + Delta-G solvation = -2763.154880 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04415 -38.81944 -35.13143 -34.35046 -33.10551 -31.54509 -30.24704 -28.63377 -27.77163 -25.91616 -25.20565 -23.41326 -21.49260 -20.93071 -20.09085 -18.30214 -17.40526 -16.79560 -16.46772 -15.91280 -15.47117 -15.20391 -14.90536 -14.56710 -14.20578 -14.00575 -13.87567 -13.47568 -13.27933 -13.16242 -12.97418 -12.83609 -12.80321 -12.68373 -12.49469 -12.19990 -12.15675 -11.84110 -11.54325 -11.36196 -11.20304 -10.89063 -10.37550 -9.99227 -9.13642 -8.74277 -7.95229 -6.17976 1.04330 1.37111 1.41561 1.50078 1.78950 1.94008 2.43547 3.21668 3.64297 3.86200 4.06512 4.33637 4.44255 4.48732 4.58513 4.59343 4.66256 4.75965 4.81107 4.84028 4.94351 4.96359 4.97038 5.09819 5.19886 5.21240 5.32498 5.37517 5.44193 5.47454 5.59684 5.70957 5.88231 5.95756 6.15544 6.24805 6.30584 6.50072 6.83191 6.91210 7.07283 7.52673 8.98058 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.007853 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.187012 B = 3564.884050 C = 4066.141841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.229 3.771 4 H 0.004 0.996 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.037 3.963 15 C 0.141 3.859 16 C -0.224 4.224 17 C 0.052 3.948 18 N -0.386 5.386 19 C 0.098 3.902 20 N -0.335 5.335 21 C 0.082 3.918 22 C -0.064 4.064 23 H 0.019 0.981 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.171 0.829 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 8.067 3.828 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.122 3.878 4 H 0.022 0.978 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.253 5.253 14 C -0.111 4.111 15 C 0.012 3.988 16 C -0.236 4.236 17 C -0.094 4.094 18 N -0.168 5.168 19 C -0.042 4.042 20 N -0.159 5.159 21 C -0.084 4.084 22 C -0.122 4.122 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.188 0.812 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.260 8.456 3.099 11.568 hybrid contribution 2.913 -0.481 -0.611 3.015 sum -4.346 7.975 2.488 9.417 Atomic orbital electron populations 1.21524 0.96828 0.99481 1.00063 1.21451 0.93973 0.98972 1.00121 1.18889 0.91011 0.90743 0.87197 0.97823 1.22068 0.94178 1.36313 1.05661 0.92883 1.25556 1.01320 0.95250 0.95601 1.70031 1.36011 1.38810 1.10350 0.85774 0.82170 0.77484 0.77768 1.19539 1.21083 1.20992 1.62392 1.56818 1.02255 1.03844 1.22212 0.96242 0.99728 0.92943 1.20084 0.93315 0.88148 0.97237 1.20019 0.96440 1.10700 0.96427 1.22523 0.91628 0.99036 0.96259 1.48549 1.06718 1.48370 1.13171 1.22067 1.04571 0.99415 0.78112 1.77087 1.15842 1.25933 0.97070 1.22578 0.92689 0.96557 0.96574 1.20191 1.00116 1.02745 0.89179 0.96182 0.93847 0.92173 0.92408 0.94897 0.93259 0.96904 0.90849 0.92754 0.90201 0.95760 0.81187 0.89211 0.88509 0.88964 0.89443 0.91083 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.84 71.98 0.71 -4.37 16 2 C -0.11 -5.13 5.14 30.60 0.16 -4.97 16 3 C 0.23 11.14 1.63 44.17 0.07 11.21 16 4 H 0.00 0.21 7.05 -2.39 -0.02 0.20 16 5 C -0.54 -28.43 6.95 25.60 0.18 -28.25 16 6 H 0.05 2.78 5.98 -2.91 -0.02 2.76 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -51.44 11.29 21.45 0.24 -51.20 16 9 Si 0.94 42.80 29.54 68.60 2.03 44.83 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.53 -21.46 3.92 -906.04 -3.56 -25.02 16 14 C 0.04 1.36 8.82 127.69 1.13 2.49 16 15 C 0.14 5.31 4.93 85.56 0.42 5.73 16 16 C -0.22 -8.36 4.97 -20.15 -0.10 -8.46 16 17 C 0.05 1.90 10.94 83.54 0.91 2.81 16 18 N -0.39 -12.78 4.01 -369.57 -1.48 -14.26 16 19 C 0.10 2.20 11.47 127.77 1.47 3.66 16 20 N -0.34 -12.09 12.58 -47.38 -0.60 -12.69 16 21 C 0.08 2.86 7.22 43.10 0.31 3.17 16 22 C -0.06 -1.73 10.30 71.24 0.73 -1.00 16 23 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 26 H 0.06 3.16 5.98 -2.39 -0.01 3.14 16 27 H 0.03 1.54 6.35 -2.39 -0.02 1.52 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.01 0.50 6.28 -2.39 -0.01 0.48 16 30 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 31 H 0.05 2.05 6.24 -2.39 -0.01 2.03 16 32 H 0.08 2.59 7.90 -2.39 -0.02 2.57 16 33 H 0.02 1.01 6.97 -2.39 -0.02 1.00 16 34 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.34 7.85 -2.39 -0.02 2.32 16 Total: -1.00 -63.16 319.79 4.07 -59.09 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.01 Total: 15.59 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 6.44 Total: -16.33 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.39 Total: -103.17 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -63.16 4.07 -59.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716390354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.442 kcal (2) G-P(sol) polarization free energy of solvation -63.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds