Wall clock time and date at job start Mon Mar 30 2020 04:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46824 * 2 1 4 4 N 1.30496 * 125.65380 * 89.97844 * 3 2 1 5 5 C 1.34130 * 109.26014 * 180.02562 * 4 3 2 6 6 C 1.34674 * 108.01710 * 359.97438 * 5 4 3 7 7 N 1.35054 * 125.64688 * 270.28764 * 3 2 1 8 8 C 1.46496 * 126.39961 * 359.97438 * 7 3 2 9 9 C 1.53001 * 109.46973 * 85.14741 * 8 7 3 10 10 N 1.46904 * 109.47026 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99992 * 180.02562 * 10 9 8 12 12 C 1.52991 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47277 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47409 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99898 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00259 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99901 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46920 * 59.99981 * 18 16 14 20 20 H 1.48504 * 109.47004 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46751 * 299.99531 * 18 16 14 22 22 H 1.09002 * 109.47219 * 59.99971 * 1 2 3 23 23 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46853 * 300.00185 * 1 2 3 25 25 H 1.08996 * 109.47125 * 239.99853 * 2 1 3 26 26 H 1.09002 * 109.46808 * 119.99372 * 2 1 3 27 27 H 1.07997 * 125.98942 * 179.97438 * 5 4 3 28 28 H 1.08002 * 126.58669 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.47200 * 205.15089 * 8 7 3 30 30 H 1.09002 * 109.47024 * 325.14755 * 8 7 3 31 31 H 1.09006 * 109.46811 * 299.99901 * 9 8 7 32 32 H 1.08990 * 109.46920 * 59.99860 * 9 8 7 33 33 H 1.00902 * 110.99997 * 303.95343 * 10 9 8 34 34 H 1.09004 * 109.46412 * 299.99960 * 11 10 9 35 35 H 1.08997 * 109.46979 * 59.99325 * 11 10 9 36 36 H 1.09008 * 109.47358 * 299.99759 * 12 11 10 37 37 H 1.08997 * 109.47868 * 59.99777 * 12 11 10 38 38 H 1.08998 * 109.47094 * 299.99724 * 13 12 11 39 39 H 1.08998 * 109.47093 * 59.99890 * 13 12 11 40 40 H 0.97005 * 119.99904 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1381 1.0603 5 6 2.7139 3.3515 0.6818 6 6 2.7273 3.3872 -0.6644 7 7 2.2894 2.1648 -1.0975 8 6 2.1328 1.7412 -2.4911 9 6 0.6845 1.9627 -2.9318 10 7 0.5273 1.5374 -4.3291 11 6 -0.8539 1.7366 -4.7878 12 6 -0.9783 1.2827 -6.2435 13 6 -2.4167 1.4907 -6.7215 14 6 -2.5391 1.0442 -8.1556 15 1 -1.6772 0.6510 -8.6742 16 6 -3.7514 1.1378 -8.8057 17 7 -4.8011 1.6162 -8.1741 18 14 -3.9032 0.5837 -10.5832 19 1 -3.5518 -0.8555 -10.6847 20 1 -5.2994 0.7857 -11.0471 21 1 -2.9795 1.3799 -11.4305 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9983 4.1583 1.3410 28 1 3.0218 4.2219 -1.2833 29 1 2.7992 2.3256 -3.1255 30 1 2.3818 0.6837 -2.5795 31 1 0.0182 1.3782 -2.2972 32 1 0.4356 3.0201 -2.8432 33 1 1.1802 2.0187 -4.9292 34 1 -1.5312 1.1511 -4.1658 35 1 -1.1130 2.7926 -4.7125 36 1 -0.3009 1.8678 -6.8657 37 1 -0.7194 0.2266 -6.3183 38 1 -3.0944 0.9060 -6.0995 39 1 -2.6752 2.5470 -6.6469 40 1 -5.6539 1.6823 -8.6316 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719668622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:59 Heat of formation + Delta-G solvation = 37.023922 kcal Electronic energy + Delta-G solvation = -17745.081841 eV Core-core repulsion = 14980.958583 eV Total energy + Delta-G solvation = -2764.123259 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27520 -37.08227 -34.68206 -33.90884 -33.22468 -31.32303 -28.91330 -28.38728 -25.82378 -23.94345 -23.14439 -22.21230 -21.53059 -20.25522 -19.50207 -17.32483 -16.46971 -16.09584 -15.49628 -15.10573 -14.66827 -14.48835 -14.17026 -13.99070 -13.92066 -13.61722 -13.23293 -12.62644 -12.41612 -12.32569 -11.87835 -11.70447 -11.62879 -11.45895 -11.06720 -10.84190 -10.65324 -10.58824 -10.10565 -9.78658 -9.76393 -9.38769 -9.11441 -8.52127 -8.43285 -8.37133 -6.02546 -4.05176 1.87824 2.55003 3.01112 3.31507 3.35958 3.38327 4.15158 4.27598 4.38710 4.44755 4.64804 4.74256 4.90281 4.96185 5.09370 5.14538 5.33202 5.37096 5.41679 5.45445 5.57668 5.66689 5.67633 5.78719 5.82854 6.11488 6.18893 6.20229 6.58279 6.61535 6.63313 7.01147 7.05364 7.11468 7.39195 7.63706 7.77769 7.97022 7.97431 8.39699 9.01737 9.59058 11.08838 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.044390 B = 0.003034 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.626804 B = 9225.529359 C = 9449.111970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C 0.212 3.788 4 N -0.494 5.494 5 C -0.031 4.031 6 C -0.060 4.060 7 N -0.451 5.451 8 C 0.104 3.896 9 C 0.040 3.960 10 N -0.687 5.687 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.339 0.661 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.630 0.753 14.642 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.051 4.051 4 N -0.213 5.213 5 C -0.179 4.179 6 C -0.193 4.193 7 N -0.134 5.134 8 C -0.019 4.019 9 C -0.090 4.090 10 N -0.318 5.318 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.156 0.844 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.233 -0.163 15.443 21.002 hybrid contribution -0.080 1.261 -1.989 2.356 sum 14.152 1.098 13.454 19.557 Atomic orbital electron populations 1.21851 0.93738 1.02623 1.02660 1.19983 0.96634 0.87246 1.03954 1.23327 1.03730 0.96702 0.81322 1.70235 1.18432 1.04274 1.28372 1.22265 1.06588 0.96301 0.92761 1.22714 1.09690 0.89944 0.96929 1.45398 1.48673 1.11869 1.07440 1.21872 0.98377 1.02865 0.78775 1.22370 0.95195 0.99286 0.92190 1.60524 1.07707 1.62244 1.01306 1.22155 0.87230 0.98750 0.98656 1.21632 1.00835 1.00561 0.91450 1.19058 0.89593 0.96966 0.95918 1.21205 0.95365 1.42037 0.97342 0.92694 1.25033 0.95932 0.95346 0.98176 1.69956 1.00646 1.46006 1.36959 0.86646 0.77005 0.79260 0.85024 1.20188 1.21279 1.20255 0.92291 0.91376 0.91993 0.90213 0.88876 0.81485 0.81085 0.89053 0.88004 0.89871 0.94808 0.84390 0.91261 0.95524 0.93568 0.92401 0.96538 0.96817 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.04 -0.36 6.24 -27.88 -0.17 -0.53 16 3 C 0.21 2.47 7.16 -155.41 -1.11 1.36 16 4 N -0.49 -6.63 11.25 -10.81 -0.12 -6.75 16 5 C -0.03 -0.35 11.87 -17.81 -0.21 -0.57 16 6 C -0.06 -0.61 11.58 -16.56 -0.19 -0.80 16 7 N -0.45 -4.73 2.75 -113.90 -0.31 -5.05 16 8 C 0.10 0.93 6.15 -4.04 -0.02 0.90 16 9 C 0.04 0.43 6.01 -3.82 -0.02 0.41 16 10 N -0.69 -8.77 6.50 -113.78 -0.74 -9.51 16 11 C 0.06 0.98 5.68 -3.83 -0.02 0.96 16 12 C -0.11 -2.12 5.41 -26.74 -0.14 -2.26 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H 0.06 0.59 5.48 -51.93 -0.28 0.31 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.63 7.18 -51.93 -0.37 0.25 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.85 7.21 -51.93 -0.37 0.47 16 31 H 0.08 0.97 5.48 -51.93 -0.28 0.69 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 3.90 8.73 -39.29 -0.34 3.55 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -31.94 329.99 -9.27 -41.21 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.70 Total: -0.63 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.09 Total: -14.60 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.44 Total: -47.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.94 -9.27 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719668622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.238 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds