Wall clock time and date at job start Mon Mar 30 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46945 * 2 1 4 4 N 1.30500 * 125.64894 * 90.02092 * 3 2 1 5 5 C 1.34127 * 109.25894 * 179.97438 * 4 3 2 6 6 C 1.34665 * 108.01668 * 0.26753 * 5 4 3 7 7 N 1.35045 * 125.65522 * 270.00216 * 3 2 1 8 8 C 1.46504 * 126.39317 * 0.05221 * 7 3 2 9 9 C 1.52992 * 109.46983 * 85.00201 * 8 7 3 10 10 N 1.46906 * 109.47138 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99914 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47091 * 324.99350 * 11 10 9 13 13 C 1.52999 * 109.47497 * 85.00144 * 11 10 9 14 14 C 1.53006 * 109.46817 * 204.99610 * 11 10 9 15 15 C 1.50704 * 109.46800 * 65.00127 * 14 11 10 16 16 H 1.08001 * 120.00098 * 359.97438 * 15 14 11 17 17 C 1.37875 * 119.99664 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00191 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47154 * 90.00266 * 19 17 15 21 21 H 1.48503 * 109.47583 * 210.00132 * 19 17 15 22 22 H 1.48506 * 109.47278 * 330.00404 * 19 17 15 23 23 H 1.08998 * 109.47510 * 300.00273 * 1 2 3 24 24 H 1.09003 * 109.47007 * 60.00270 * 1 2 3 25 25 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47096 * 240.00382 * 2 1 3 27 27 H 1.08994 * 109.47273 * 119.99678 * 2 1 3 28 28 H 1.08002 * 125.98809 * 179.97438 * 5 4 3 29 29 H 1.08002 * 126.58770 * 179.69323 * 6 5 4 30 30 H 1.08992 * 109.47067 * 205.00332 * 8 7 3 31 31 H 1.09003 * 109.46984 * 325.00212 * 8 7 3 32 32 H 1.09007 * 109.47672 * 299.99683 * 9 8 7 33 33 H 1.09003 * 109.47252 * 60.00175 * 9 8 7 34 34 H 1.00899 * 110.99589 * 303.95644 * 10 9 8 35 35 H 1.09001 * 109.47264 * 59.99212 * 13 11 10 36 36 H 1.08995 * 109.47305 * 179.97438 * 13 11 10 37 37 H 1.09002 * 109.46465 * 299.99973 * 13 11 10 38 38 H 1.08994 * 109.47232 * 184.99806 * 14 11 10 39 39 H 1.08997 * 109.47129 * 305.00052 * 14 11 10 40 40 H 0.96991 * 120.00124 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2862 2.1378 1.0604 5 6 2.7155 3.3509 0.6820 6 6 2.7224 3.3890 -0.6641 7 7 2.2946 2.1631 -1.0973 8 6 2.1431 1.7377 -2.4910 9 6 0.6960 1.9569 -2.9366 10 7 0.5438 1.5298 -4.3339 11 6 -0.8362 1.7267 -4.7973 12 1 -1.5261 1.5372 -3.9750 13 6 -1.0094 3.1658 -5.2871 14 6 -1.1320 0.7586 -5.9445 15 6 -1.0817 -0.6578 -5.4321 16 1 -0.8605 -0.8483 -4.3923 17 6 -1.3171 -1.7103 -6.2910 18 7 -1.2727 -2.9464 -5.8440 19 14 -1.6990 -1.3808 -8.0896 20 1 -0.4342 -1.3534 -8.8673 21 1 -2.5791 -2.4559 -8.6139 22 1 -2.3873 -0.0711 -8.2176 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.0006 4.1574 1.3413 29 1 3.0118 4.2255 -1.2830 30 1 2.8106 2.3223 -3.1239 31 1 2.3937 0.6804 -2.5775 32 1 0.0283 1.3722 -2.3037 33 1 0.4453 3.0142 -2.8501 34 1 1.1981 2.0113 -4.9324 35 1 -0.3195 3.3553 -6.1094 36 1 -2.0332 3.3118 -5.6313 37 1 -0.7986 3.8555 -4.4697 38 1 -2.1238 0.9643 -6.3470 39 1 -0.3873 0.8875 -6.7299 40 1 -1.4386 -3.6868 -6.4482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719727725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:10 Heat of formation + Delta-G solvation = 48.414502 kcal Electronic energy + Delta-G solvation = -18614.386569 eV Core-core repulsion = 15850.757243 eV Total energy + Delta-G solvation = -2763.629326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.06501 -37.29751 -34.58251 -33.61929 -32.55695 -30.95170 -28.59908 -27.95928 -27.04678 -23.67147 -23.15981 -22.26015 -21.33766 -19.97621 -19.22070 -17.05876 -16.63223 -15.74994 -15.20414 -14.87550 -14.48465 -14.29615 -14.13744 -13.63990 -13.38562 -13.29790 -12.87036 -12.48959 -12.35042 -12.19882 -12.01981 -11.76806 -11.57779 -11.38511 -11.27114 -10.81603 -10.72320 -10.23734 -9.95334 -9.88928 -9.67305 -9.48831 -9.09863 -8.46579 -8.31296 -7.85874 -5.95200 -3.89539 2.09138 2.79394 3.20228 3.32849 3.40832 3.42421 4.44401 4.50665 4.55738 4.67529 4.91537 5.04477 5.17564 5.26935 5.34181 5.39454 5.41190 5.49846 5.61226 5.66804 5.70533 5.73058 5.79498 5.87324 6.02956 6.09509 6.23070 6.35904 6.41247 6.47917 6.68536 6.81117 7.08996 7.15867 7.25357 7.61869 7.79497 7.92051 8.17766 8.66681 9.14891 9.67793 11.18733 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.027456 B = 0.005042 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.585313 B = 5551.836870 C = 6211.620554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C 0.217 3.783 4 N -0.498 5.498 5 C -0.034 4.034 6 C -0.063 4.063 7 N -0.449 5.449 8 C 0.103 3.897 9 C 0.044 3.956 10 N -0.658 5.658 11 C 0.101 3.899 12 H 0.071 0.929 13 C -0.183 4.183 14 C -0.004 4.004 15 C -0.491 4.491 16 H 0.076 0.924 17 C 0.062 3.938 18 N -0.908 5.908 19 Si 0.874 3.126 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.269 1.269 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.331 0.669 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 11.926 7.297 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 C -0.046 4.046 4 N -0.216 5.216 5 C -0.182 4.182 6 C -0.196 4.196 7 N -0.131 5.131 8 C -0.020 4.020 9 C -0.086 4.086 10 N -0.288 5.288 11 C -0.009 4.009 12 H 0.089 0.911 13 C -0.243 4.243 14 C -0.041 4.041 15 C -0.529 4.529 16 H 0.094 0.906 17 C -0.138 4.138 18 N -0.548 5.548 19 Si 0.703 3.297 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.194 1.194 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.183 0.817 29 H 0.187 0.813 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.201 10.771 8.054 14.810 hybrid contribution -0.028 1.551 -2.068 2.585 sum 6.173 12.323 5.986 15.026 Atomic orbital electron populations 1.21823 0.93629 1.02882 1.02350 1.20005 0.96797 0.87083 1.04077 1.23366 1.03211 0.96767 0.81253 1.70234 1.18674 1.04288 1.28448 1.22224 1.06897 0.96343 0.92717 1.22653 1.10253 0.89894 0.96848 1.45443 1.48436 1.11546 1.07657 1.21917 0.98638 1.03118 0.78312 1.22361 0.94988 0.98343 0.92889 1.60442 1.06470 1.61593 1.00326 1.21567 0.88105 0.92054 0.99153 0.91074 1.22594 1.02281 0.98906 1.00476 1.19613 0.95637 0.95715 0.93183 1.21005 1.45895 0.88079 0.97952 0.90560 1.25006 0.95521 0.95182 0.98093 1.69904 1.51250 0.98298 1.35335 0.86878 0.78465 0.77913 0.86485 1.20576 1.21654 1.19385 0.92365 0.92142 0.91198 0.89883 0.89034 0.81688 0.81326 0.89356 0.87657 0.89869 0.95700 0.85128 0.92927 0.92222 0.94083 0.96417 0.96984 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 37.16 0.37 -1.55 16 2 C -0.04 -0.51 6.24 -27.88 -0.17 -0.69 16 3 C 0.22 3.10 7.16 -155.41 -1.11 1.99 16 4 N -0.50 -7.69 11.25 -10.81 -0.12 -7.82 16 5 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 6 C -0.06 -0.76 11.58 -16.57 -0.19 -0.95 16 7 N -0.45 -5.82 2.75 -113.91 -0.31 -6.14 16 8 C 0.10 1.24 6.15 -4.04 -0.02 1.22 16 9 C 0.04 0.62 5.81 -3.82 -0.02 0.60 16 10 N -0.66 -10.77 5.97 -106.72 -0.64 -11.41 16 11 C 0.10 1.82 2.53 -67.71 -0.17 1.65 16 12 H 0.07 1.36 7.80 -51.93 -0.40 0.96 16 13 C -0.18 -2.70 9.16 37.16 0.34 -2.36 16 14 C 0.00 -0.09 3.72 -27.88 -0.10 -0.19 16 15 C -0.49 -13.43 9.39 -34.44 -0.32 -13.75 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 18 N -0.91 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.85 5.50 -51.93 -0.29 0.57 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.02 7.17 -51.93 -0.37 0.65 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.11 1.34 7.21 -51.93 -0.37 0.96 16 32 H 0.08 1.30 5.42 -51.93 -0.28 1.01 16 33 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 34 H 0.33 4.80 8.47 -39.29 -0.33 4.47 16 35 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 38 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -31.73 323.59 -8.37 -40.11 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.56 Total: 3.51 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.72 Total: -13.01 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.30 Total: -52.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.73 -8.37 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719727725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.521 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds