Wall clock time and date at job start Mon Mar 30 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46945 * 2 1 4 4 N 1.30500 * 125.64894 * 90.02092 * 3 2 1 5 5 C 1.34127 * 109.25894 * 179.97438 * 4 3 2 6 6 C 1.34665 * 108.01668 * 0.26753 * 5 4 3 7 7 N 1.35045 * 125.65522 * 270.00216 * 3 2 1 8 8 C 1.46504 * 126.39317 * 0.05221 * 7 3 2 9 9 C 1.52992 * 109.46983 * 85.00201 * 8 7 3 10 10 N 1.46906 * 109.47138 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99914 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47091 * 324.99350 * 11 10 9 13 13 C 1.52999 * 109.47497 * 85.00144 * 11 10 9 14 14 C 1.53006 * 109.46817 * 204.99610 * 11 10 9 15 15 C 1.50704 * 109.46800 * 65.00127 * 14 11 10 16 16 H 1.08001 * 120.00098 * 359.97438 * 15 14 11 17 17 C 1.37875 * 119.99664 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00191 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47154 * 90.00266 * 19 17 15 21 21 H 1.48503 * 109.47583 * 210.00132 * 19 17 15 22 22 H 1.48506 * 109.47278 * 330.00404 * 19 17 15 23 23 H 1.08998 * 109.47510 * 300.00273 * 1 2 3 24 24 H 1.09003 * 109.47007 * 60.00270 * 1 2 3 25 25 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47096 * 240.00382 * 2 1 3 27 27 H 1.08994 * 109.47273 * 119.99678 * 2 1 3 28 28 H 1.08002 * 125.98809 * 179.97438 * 5 4 3 29 29 H 1.08002 * 126.58770 * 179.69323 * 6 5 4 30 30 H 1.08992 * 109.47067 * 205.00332 * 8 7 3 31 31 H 1.09003 * 109.46984 * 325.00212 * 8 7 3 32 32 H 1.09007 * 109.47672 * 299.99683 * 9 8 7 33 33 H 1.09003 * 109.47252 * 60.00175 * 9 8 7 34 34 H 1.00899 * 110.99589 * 303.95644 * 10 9 8 35 35 H 1.09001 * 109.47264 * 59.99212 * 13 11 10 36 36 H 1.08995 * 109.47305 * 179.97438 * 13 11 10 37 37 H 1.09002 * 109.46465 * 299.99973 * 13 11 10 38 38 H 1.08994 * 109.47232 * 184.99806 * 14 11 10 39 39 H 1.08997 * 109.47129 * 305.00052 * 14 11 10 40 40 H 0.96991 * 120.00124 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2862 2.1378 1.0604 5 6 2.7155 3.3509 0.6820 6 6 2.7224 3.3890 -0.6641 7 7 2.2946 2.1631 -1.0973 8 6 2.1431 1.7377 -2.4910 9 6 0.6960 1.9569 -2.9366 10 7 0.5438 1.5298 -4.3339 11 6 -0.8362 1.7267 -4.7973 12 1 -1.5261 1.5372 -3.9750 13 6 -1.0094 3.1658 -5.2871 14 6 -1.1320 0.7586 -5.9445 15 6 -1.0817 -0.6578 -5.4321 16 1 -0.8605 -0.8483 -4.3923 17 6 -1.3171 -1.7103 -6.2910 18 7 -1.2727 -2.9464 -5.8440 19 14 -1.6990 -1.3808 -8.0896 20 1 -0.4342 -1.3534 -8.8673 21 1 -2.5791 -2.4559 -8.6139 22 1 -2.3873 -0.0711 -8.2176 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.0006 4.1574 1.3413 29 1 3.0118 4.2255 -1.2830 30 1 2.8106 2.3223 -3.1239 31 1 2.3937 0.6804 -2.5775 32 1 0.0283 1.3722 -2.3037 33 1 0.4453 3.0142 -2.8501 34 1 1.1981 2.0113 -4.9324 35 1 -0.3195 3.3553 -6.1094 36 1 -2.0332 3.3118 -5.6313 37 1 -0.7986 3.8555 -4.4697 38 1 -2.1238 0.9643 -6.3470 39 1 -0.3873 0.8875 -6.7299 40 1 -1.4386 -3.6868 -6.4482 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719727725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:10 Heat of formation + Delta-G solvation = 28.220064 kcal Electronic energy + Delta-G solvation = -18615.262266 eV Core-core repulsion = 15850.757243 eV Total energy + Delta-G solvation = -2764.505023 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.06566 -38.62662 -35.81417 -34.68097 -34.47593 -32.37690 -29.75673 -29.51907 -28.16857 -24.83370 -24.65523 -23.61855 -22.32190 -21.47739 -20.30444 -18.74715 -18.06336 -16.97466 -16.31312 -16.19494 -16.06000 -15.50280 -15.24565 -15.05610 -14.54497 -14.41975 -14.28448 -14.01819 -13.68296 -13.41131 -13.31632 -13.10724 -13.00325 -12.57820 -12.48039 -12.37879 -11.91600 -11.81972 -11.68146 -11.47192 -11.17266 -10.94668 -10.64539 -10.56107 -9.29395 -9.12211 -8.14382 -6.13000 1.10051 1.40174 1.41906 1.52117 1.80726 2.18191 2.44923 3.18345 3.35507 3.52465 3.70256 3.91905 3.96879 4.14796 4.20654 4.26843 4.34867 4.37000 4.43815 4.53829 4.63862 4.69418 4.73050 4.80141 4.93969 4.98113 5.05357 5.13644 5.18841 5.28373 5.35361 5.44454 5.50533 5.78493 5.87823 6.18927 6.25747 6.49726 6.68601 6.94979 7.16825 7.47796 9.02790 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.027456 B = 0.005042 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.585313 B = 5551.836870 C = 6211.620554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 C 0.197 3.803 4 N -0.528 5.528 5 C -0.055 4.055 6 C -0.053 4.053 7 N -0.450 5.450 8 C 0.110 3.890 9 C 0.055 3.945 10 N -0.676 5.676 11 C 0.105 3.895 12 H 0.051 0.949 13 C -0.172 4.172 14 C -0.003 4.003 15 C -0.488 4.488 16 H 0.036 0.964 17 C -0.003 4.003 18 N -0.958 5.958 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.293 1.293 22 H -0.248 1.248 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.188 0.812 29 H 0.205 0.795 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 14.500 5.900 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.066 4.066 4 N -0.248 5.248 5 C -0.202 4.202 6 C -0.186 4.186 7 N -0.132 5.132 8 C -0.012 4.012 9 C -0.075 4.075 10 N -0.308 5.308 11 C -0.005 4.005 12 H 0.069 0.931 13 C -0.231 4.231 14 C -0.041 4.041 15 C -0.527 4.527 16 H 0.054 0.946 17 C -0.198 4.198 18 N -0.601 5.601 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.171 1.171 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.205 0.795 29 H 0.222 0.778 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.164 0.836 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.894 13.379 6.662 16.460 hybrid contribution -0.219 0.753 -1.524 1.714 sum 6.675 14.132 5.138 16.452 Atomic orbital electron populations 1.21754 0.94060 1.02766 1.01498 1.19988 0.96340 0.86999 1.04379 1.23506 1.04078 0.97268 0.81725 1.70196 1.19550 1.05614 1.29409 1.22723 1.07294 0.96244 0.93935 1.23235 1.08448 0.89987 0.96942 1.45522 1.48248 1.11918 1.07549 1.21855 0.97868 1.03162 0.78353 1.22208 0.95816 0.98390 0.91059 1.60239 1.05931 1.62872 1.01773 1.21313 0.88796 0.93391 0.96980 0.93056 1.22436 1.02889 0.96228 1.01498 1.19580 0.95816 0.93779 0.94910 1.21297 1.44298 0.90840 0.96226 0.94585 1.25928 0.95814 0.94836 1.03230 1.70077 1.53399 0.99496 1.37145 0.85765 0.78589 0.78475 0.80331 1.19670 1.21941 1.17140 0.92390 0.93664 0.90950 0.89967 0.88295 0.79538 0.77809 0.86465 0.88737 0.92222 0.94451 0.83593 0.91573 0.91965 0.92174 0.96318 0.96267 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.89 71.98 0.71 -3.12 16 2 C -0.04 -0.99 6.24 29.85 0.19 -0.80 16 3 C 0.20 5.57 7.16 138.13 0.99 6.55 16 4 N -0.53 -16.05 11.25 -188.13 -2.12 -18.17 16 5 C -0.05 -1.34 11.87 83.52 0.99 -0.35 16 6 C -0.05 -1.13 11.58 83.09 0.96 -0.17 16 7 N -0.45 -10.99 2.75 -514.30 -1.41 -12.41 16 8 C 0.11 2.48 6.15 86.38 0.53 3.01 16 9 C 0.06 1.47 5.81 86.30 0.50 1.97 16 10 N -0.68 -21.23 5.97 -491.55 -2.93 -24.16 16 11 C 0.10 3.66 2.53 44.92 0.11 3.78 16 12 H 0.05 1.97 7.80 -2.39 -0.02 1.95 16 13 C -0.17 -4.47 9.16 71.98 0.66 -3.81 16 14 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16 15 C -0.49 -27.10 9.39 25.60 0.24 -26.86 16 16 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 17 C 0.00 -0.19 5.47 84.65 0.46 0.27 16 18 N -0.96 -60.04 13.96 21.45 0.30 -59.74 16 19 Si 0.94 43.85 27.47 68.60 1.88 45.73 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.34 5.50 -2.39 -0.01 1.33 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 2.10 7.17 -2.39 -0.02 2.08 16 27 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 29 H 0.21 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.35 7.21 -2.39 -0.02 2.34 16 32 H 0.06 1.89 5.42 -2.38 -0.01 1.88 16 33 H 0.04 0.91 7.44 -2.39 -0.02 0.89 16 34 H 0.35 9.07 8.47 -89.69 -0.76 8.31 16 35 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.35 7.45 -2.39 -0.02 1.33 16 38 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 39 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.64 323.59 2.38 -67.26 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.20 Total: 21.04 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 6.46 Total: -19.55 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.16 Total: -114.48 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -69.64 2.38 -67.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719727725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.479 kcal (2) G-P(sol) polarization free energy of solvation -69.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds