Wall clock time and date at job start Mon Mar 30 2020 04:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.03829 * 2 1 4 4 N 1.34955 * 107.74306 * 179.87324 * 3 2 1 5 5 C 1.46493 * 126.03606 * 180.14569 * 4 3 2 6 6 N 1.40079 * 107.92480 * 0.39416 * 4 3 2 7 7 C 1.30843 * 108.20761 * 359.75375 * 6 4 3 8 8 C 1.50700 * 125.89741 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.46774 * 269.97463 * 8 7 6 10 10 C 1.46902 * 111.00071 * 66.05006 * 9 8 7 11 11 C 1.46900 * 110.99710 * 190.00432 * 9 8 7 12 12 C 1.52999 * 109.47206 * 170.00188 * 11 9 8 13 13 C 1.53005 * 109.47169 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47004 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00322 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00252 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00098 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47167 * 89.99721 * 18 16 14 20 20 H 1.48500 * 109.47186 * 209.99872 * 18 16 14 21 21 H 1.48498 * 109.46987 * 330.00050 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68779 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68879 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68860 * 1 2 3 25 25 H 1.07998 * 126.12681 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47340 * 270.26498 * 5 4 3 27 27 H 1.08998 * 109.47431 * 30.26477 * 5 4 3 28 28 H 1.09000 * 109.47150 * 150.26070 * 5 4 3 29 29 H 1.09000 * 109.47248 * 29.97653 * 8 7 6 30 30 H 1.09002 * 109.46815 * 149.97831 * 8 7 6 31 31 H 1.09003 * 109.46846 * 60.00047 * 10 9 8 32 32 H 1.09005 * 109.46675 * 179.97438 * 10 9 8 33 33 H 1.08995 * 109.46722 * 299.99905 * 10 9 8 34 34 H 1.09003 * 109.46927 * 289.99884 * 11 9 8 35 35 H 1.09003 * 109.47569 * 49.99562 * 11 9 8 36 36 H 1.09003 * 109.46929 * 299.99694 * 12 11 9 37 37 H 1.08998 * 109.47057 * 60.00110 * 12 11 9 38 38 H 1.09003 * 109.46914 * 299.99665 * 13 12 11 39 39 H 1.08992 * 109.47201 * 59.99635 * 13 12 11 40 40 H 0.96996 * 120.00197 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0942 0.0000 4 7 3.5845 0.6705 0.0028 5 6 4.7746 1.5247 0.0069 6 7 3.5754 -0.7302 -0.0045 7 6 2.3299 -1.1310 -0.0062 8 6 1.8627 -2.5638 -0.0130 9 7 1.7101 -3.0223 -1.4002 10 6 3.0096 -3.0753 -2.0833 11 6 1.0344 -4.3257 -1.4525 12 6 0.6707 -4.6539 -2.9019 13 6 -0.0336 -6.0111 -2.9562 14 6 -0.3924 -6.3341 -4.3837 15 1 -0.1426 -5.6409 -5.1734 16 6 -1.0385 -7.5150 -4.6819 17 7 -1.3413 -8.3598 -3.7205 18 14 -1.4839 -7.9151 -6.4514 19 1 -0.3651 -8.6554 -7.0882 20 1 -2.7095 -8.7532 -6.4760 21 1 -1.7311 -6.6547 -7.1967 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 1.9724 2.1223 0.0004 26 1 5.0697 1.7416 -1.0198 27 1 4.5509 2.4571 0.5253 28 1 5.5887 1.0111 0.5182 29 1 2.5965 -3.1876 0.4973 30 1 0.9042 -2.6358 0.5010 31 1 3.6686 -3.7661 -1.5573 32 1 2.8676 -3.4182 -3.1082 33 1 3.4566 -2.0813 -2.0909 34 1 1.6996 -5.0957 -1.0615 35 1 0.1271 -4.2891 -0.8495 36 1 0.0055 -3.8839 -3.2929 37 1 1.5780 -4.6907 -3.5047 38 1 0.6312 -6.7813 -2.5651 39 1 -0.9409 -5.9740 -2.3534 40 1 -1.7962 -9.1904 -3.9303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724060299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:59 Heat of formation + Delta-G solvation = 67.825669 kcal Electronic energy + Delta-G solvation = -18067.251151 eV Core-core repulsion = 15304.463556 eV Total energy + Delta-G solvation = -2762.787595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28328 -37.44836 -34.16799 -33.31840 -31.76109 -31.11794 -28.78900 -27.16620 -26.91236 -25.07456 -23.68372 -21.51299 -20.74041 -19.77979 -19.26983 -16.66063 -16.26800 -15.80445 -15.17910 -14.95300 -14.51674 -14.33436 -13.88553 -13.54360 -13.36513 -13.17035 -12.58716 -12.50217 -12.27450 -12.19995 -11.79330 -11.68661 -11.49037 -11.34883 -11.12343 -10.77056 -10.50595 -10.48156 -10.38972 -9.53764 -9.38516 -9.20456 -8.99050 -8.29153 -8.28341 -7.96960 -5.93921 -3.95520 1.82392 2.43391 2.71018 3.36325 3.42226 3.46373 4.29786 4.46328 4.54403 4.68852 4.87920 4.92713 5.13842 5.19414 5.34659 5.41886 5.50784 5.62048 5.65986 5.79456 5.81372 5.94227 5.98378 6.07485 6.15405 6.27322 6.28424 6.41377 6.66446 6.79127 6.86366 6.97700 7.19841 7.40841 7.48361 7.72665 7.75867 7.91554 8.07351 8.51041 9.11845 9.68143 11.17606 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.003487 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.573267 B = 8028.396708 C = 8145.099133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.218 4.218 3 C 0.042 3.958 4 N -0.382 5.382 5 C 0.106 3.894 6 N -0.294 5.294 7 C 0.094 3.906 8 C 0.132 3.868 9 N -0.535 5.535 10 C 0.026 3.974 11 C 0.057 3.943 12 C -0.104 4.104 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.170 0.830 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 20.072 9.864 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.229 4.229 3 C -0.103 4.103 4 N -0.164 5.164 5 C -0.036 4.036 6 N -0.117 5.117 7 C -0.073 4.073 8 C 0.002 3.998 9 N -0.259 5.259 10 C -0.122 4.122 11 C -0.070 4.070 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.187 0.813 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.731 20.003 9.658 24.251 hybrid contribution -0.426 -0.454 -0.561 0.838 sum 9.305 19.550 9.097 23.485 Atomic orbital electron populations 1.20084 0.89161 1.02830 1.01218 1.20022 0.97273 0.91151 1.14476 1.22251 0.84197 0.99802 1.04003 1.48307 1.05475 1.04728 1.57915 1.21775 0.85786 0.92893 1.03149 1.77308 1.20765 0.88453 1.25134 1.22107 0.90013 0.96402 0.98788 1.20410 1.00520 0.87747 0.91080 1.62015 1.21424 1.29347 1.13154 1.22395 0.89406 1.00827 0.99590 1.22321 0.97516 0.86882 1.00292 1.21655 1.00047 1.00080 0.92434 1.19075 0.95252 0.90335 0.96917 1.21266 1.37181 1.03702 0.93365 0.92702 1.25024 0.96004 0.96430 0.97076 1.69965 1.41676 1.10320 1.31720 0.86610 0.77867 0.78324 0.85298 1.20753 1.21271 1.19854 0.92451 0.90745 0.92386 0.81318 0.90992 0.89769 0.89528 0.93721 0.88932 0.95991 0.90825 0.91967 0.95208 0.91067 0.92573 0.93451 0.96840 0.96556 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.04 36.01 0.36 -0.44 16 2 C -0.22 -2.74 6.10 -105.05 -0.64 -3.38 16 3 C 0.04 0.45 11.40 -17.22 -0.20 0.25 16 4 N -0.38 -4.36 4.01 -68.17 -0.27 -4.63 16 5 C 0.11 0.70 11.47 59.84 0.69 1.39 16 6 N -0.29 -4.28 11.85 33.67 0.40 -3.89 16 7 C 0.09 1.35 5.84 -82.40 -0.48 0.87 16 8 C 0.13 1.91 5.20 -4.97 -0.03 1.88 16 9 N -0.53 -8.78 4.75 -244.36 -1.16 -9.94 16 10 C 0.03 0.42 9.17 60.07 0.55 0.97 16 11 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 12 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 15 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.90 7.92 -51.93 -0.41 0.49 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.09 1.21 7.71 -51.93 -0.40 0.81 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.22 6.30 -51.93 -0.33 0.89 16 33 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 34 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.01 6.47 -51.93 -0.34 0.68 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -33.35 330.25 -7.64 -40.99 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -6.85 Total: -4.68 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.45 Total: -13.18 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.30 Total: -45.15 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.35 -7.64 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724060299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.817 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds