Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00284 * 2 1 4 4 C 1.52997 * 109.46586 * 66.05236 * 3 2 1 5 5 C 1.53006 * 109.47042 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47226 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46910 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99936 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00033 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99997 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47216 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47065 * 119.99804 * 11 9 7 14 14 H 1.48507 * 109.47224 * 239.99580 * 11 9 7 15 15 C 1.46904 * 110.99466 * 236.04758 * 2 1 3 16 16 C 1.50696 * 109.47557 * 293.95677 * 15 2 1 17 17 C 1.39866 * 125.89915 * 95.01641 * 16 15 2 18 18 C 1.35320 * 107.91898 * 179.97438 * 17 16 15 19 19 N 1.34951 * 107.74569 * 359.97438 * 18 17 16 20 20 C 1.46504 * 126.03463 * 180.02562 * 19 18 17 21 21 N 1.30844 * 125.89476 * 274.97727 * 16 15 2 22 22 H 1.09000 * 109.47254 * 183.95004 * 1 2 3 23 23 H 1.09008 * 109.46751 * 303.95267 * 1 2 3 24 24 H 1.08999 * 109.46966 * 63.94661 * 1 2 3 25 25 H 1.09001 * 109.47219 * 186.04949 * 3 2 1 26 26 H 1.08992 * 109.47172 * 306.05204 * 3 2 1 27 27 H 1.08999 * 109.47328 * 299.99033 * 4 3 2 28 28 H 1.08995 * 109.47856 * 59.99901 * 4 3 2 29 29 H 1.09001 * 109.47055 * 299.99892 * 5 4 3 30 30 H 1.09004 * 109.46890 * 59.99496 * 5 4 3 31 31 H 1.08994 * 109.47616 * 299.99822 * 6 5 4 32 32 H 1.09001 * 109.46851 * 60.00303 * 6 5 4 33 33 H 0.97003 * 119.99872 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.46934 * 173.95112 * 15 2 1 35 35 H 1.09004 * 109.47355 * 53.95729 * 15 2 1 36 36 H 1.07993 * 126.04141 * 359.97438 * 17 16 15 37 37 H 1.07996 * 126.12765 * 180.02562 * 18 17 16 38 38 H 1.09005 * 109.46927 * 270.02579 * 20 19 18 39 39 H 1.08994 * 109.47314 * 30.02415 * 20 19 18 40 40 H 1.08998 * 109.46715 * 150.02896 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0572 1.3183 5 6 2.1805 3.4855 1.3187 6 6 1.8161 4.1715 2.6368 7 6 2.3563 5.5784 2.6368 8 1 2.9049 5.9463 1.7824 9 6 2.1508 6.3957 3.7281 10 7 1.4831 5.9476 4.7688 11 14 2.8210 8.1394 3.7284 12 1 3.5299 8.3975 2.4494 13 1 1.6988 9.1009 3.8758 14 1 3.7673 8.3058 4.8607 15 6 1.9953 -0.7660 -1.1377 16 6 1.6368 -2.2204 -0.9731 17 6 0.5247 -2.8591 -1.5312 18 6 0.5568 -4.1578 -1.1523 19 7 1.6508 -4.3346 -0.3822 20 6 2.0719 -5.5918 0.2411 21 7 2.3125 -3.1039 -0.2839 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8525 24 1 -0.3633 0.4514 -0.9232 25 1 3.0798 1.3443 -0.1083 26 1 1.5612 1.9273 -0.8308 27 1 0.5474 2.0844 1.4266 28 1 2.0659 1.5013 2.1492 29 1 3.2648 3.4580 1.2106 30 1 1.7465 4.0417 0.4878 31 1 0.7319 4.1991 2.7445 32 1 2.2499 3.6154 3.4679 33 1 1.3383 6.5228 5.5364 34 1 3.0796 -0.6611 -1.1758 35 1 1.5610 -0.3872 -2.0629 36 1 -0.2269 -2.3975 -2.1544 37 1 -0.1635 -4.9169 -1.4191 38 1 1.6245 -5.6739 1.2317 39 1 1.7464 -6.4298 -0.3751 40 1 3.1581 -5.6069 0.3307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724080220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = 66.861144 kcal Electronic energy + Delta-G solvation = -17626.240977 eV Core-core repulsion = 14863.411557 eV Total energy + Delta-G solvation = -2762.829420 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29842 -37.71318 -34.53688 -33.39114 -32.06192 -30.31951 -29.08323 -27.94490 -26.46448 -24.97905 -22.98172 -21.27914 -20.68916 -19.97953 -19.58655 -17.10612 -16.15080 -15.90047 -15.42963 -15.15435 -14.65932 -14.38858 -14.18453 -13.93145 -13.55926 -12.87704 -12.83361 -12.46830 -12.45249 -12.15369 -11.85583 -11.58503 -11.44395 -11.25204 -10.93204 -10.64602 -10.42092 -10.40649 -10.27446 -9.52955 -9.43391 -9.18298 -8.93110 -8.71664 -8.27950 -8.17314 -5.92798 -3.94665 1.74951 2.35654 2.62122 3.35323 3.42431 3.46975 4.18436 4.29169 4.52144 4.60601 4.77325 4.87385 5.10909 5.11831 5.33521 5.37351 5.42761 5.51412 5.56383 5.62535 5.71788 5.79432 5.94990 5.99000 6.09510 6.25279 6.33591 6.49898 6.61523 6.84153 6.90994 7.06350 7.15411 7.19736 7.33867 7.64598 7.77684 7.94190 8.09176 8.52000 9.13291 9.68944 11.18649 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.052504 B = 0.002899 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.167784 B = 9655.298222 C = 9788.451847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.054 3.946 10 N -0.896 5.896 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.133 3.867 16 C 0.087 3.913 17 C -0.268 4.268 18 C 0.048 3.952 19 N -0.381 5.381 20 C 0.103 3.897 21 N -0.276 5.276 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -22.525 -13.514 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.070 4.070 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.003 3.997 16 C -0.081 4.081 17 C -0.298 4.298 18 C -0.097 4.097 19 N -0.163 5.163 20 C -0.039 4.039 21 N -0.098 5.098 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.188 0.812 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.265 -23.075 -12.118 26.094 hybrid contribution -0.806 1.329 -1.077 1.891 sum -2.071 -21.746 -13.194 25.520 Atomic orbital electron populations 1.22463 0.87386 1.01978 1.00797 1.61937 1.08151 1.14484 1.41488 1.22256 0.99840 0.86360 0.98508 1.21671 1.00837 0.96792 0.95833 1.21597 0.99372 0.92943 1.00784 1.19094 0.96681 0.94624 0.91245 1.21340 1.34516 0.98016 1.01738 0.92719 1.25040 0.95430 0.98465 0.95685 1.69985 1.41215 1.36307 1.06110 0.86561 0.78720 0.84923 0.77943 1.19772 1.21077 1.21055 1.20378 1.00927 0.85825 0.92535 1.22146 0.94136 0.95782 0.96005 1.21410 1.03144 0.93749 1.11461 1.22476 0.92259 0.98615 0.96366 1.48570 1.19504 1.08644 1.39598 1.21824 1.02714 0.81038 0.98302 1.77412 1.20553 0.89344 1.22532 0.91637 0.90728 0.95774 0.90909 0.94957 0.92540 0.91705 0.93452 0.93696 0.96754 0.96614 0.93150 0.89427 0.92914 0.83789 0.81168 0.90779 0.89697 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.13 60.07 0.55 0.84 16 2 N -0.54 -7.70 4.75 -244.37 -1.16 -8.86 16 3 C 0.06 0.87 4.96 -3.83 -0.02 0.85 16 4 C -0.11 -2.06 5.15 -26.73 -0.14 -2.19 16 5 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 6 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 11 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.13 1.66 5.52 -4.98 -0.03 1.63 16 16 C 0.09 1.12 5.92 -82.41 -0.49 0.63 16 17 C -0.27 -2.83 9.75 -40.01 -0.39 -3.22 16 18 C 0.05 0.44 11.49 -17.22 -0.20 0.24 16 19 N -0.38 -4.02 4.01 -68.16 -0.27 -4.29 16 20 C 0.10 0.62 11.47 59.85 0.69 1.31 16 21 N -0.28 -3.88 12.58 33.67 0.42 -3.46 16 22 H 0.06 0.83 6.55 -51.93 -0.34 0.49 16 23 H 0.07 1.04 6.30 -51.92 -0.33 0.71 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 26 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.06 1.02 6.47 -51.93 -0.34 0.68 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 34 H 0.09 1.08 7.93 -51.93 -0.41 0.67 16 35 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -34.27 330.45 -7.89 -42.17 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -6.86 Total: -4.76 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.71 Total: -15.92 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.28 Total: -43.63 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.27 -7.89 -42.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724080220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.028 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds