Wall clock time and date at job start Mon Mar 30 2020 03:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00042 * 2 1 4 4 H 1.48508 * 109.46879 * 269.99961 * 3 2 1 5 5 H 1.48501 * 109.47132 * 29.99462 * 3 2 1 6 6 H 1.48497 * 109.47228 * 149.99928 * 3 2 1 7 7 C 1.37881 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99953 * 169.70903 * 7 2 1 9 9 C 1.50696 * 119.99811 * 349.44218 * 7 2 1 10 10 C 1.53000 * 115.55259 * 52.93224 * 9 7 2 11 11 N 1.46900 * 109.46957 * 59.94256 * 10 9 7 12 12 C 1.46342 * 111.00298 * 62.81910 * 11 10 9 13 13 C 1.53855 * 111.72091 * 178.41334 * 12 11 10 14 14 C 1.51460 * 107.05797 * 56.21820 * 13 12 11 15 15 H 1.09011 * 109.66701 * 56.24565 * 14 13 12 16 16 O 1.42148 * 118.22196 * 182.92659 * 14 13 12 17 17 C 1.45128 * 105.10954 * 162.03642 * 16 14 13 18 18 C 1.55157 * 107.05686 * 332.90820 * 17 16 14 19 19 C 1.52931 * 102.80125 * 357.71007 * 18 17 16 20 20 H 1.09001 * 111.05788 * 270.04789 * 19 18 17 21 21 C 1.47662 * 110.99772 * 295.40229 * 11 10 9 22 22 C 1.53004 * 117.49687 * 267.26660 * 9 7 2 23 23 C 1.52996 * 117.49908 * 198.60881 * 9 7 2 24 24 H 0.96998 * 119.99686 * 5.04583 * 1 2 3 25 25 H 1.08997 * 109.47215 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47713 * 299.93918 * 10 9 7 27 27 H 1.08997 * 109.03412 * 298.99130 * 12 11 10 28 28 H 1.08997 * 109.03134 * 57.83588 * 12 11 10 29 29 H 1.09002 * 109.93898 * 175.60571 * 13 12 11 30 30 H 1.08992 * 109.93737 * 296.74485 * 13 12 11 31 31 H 1.08996 * 109.91948 * 92.26120 * 17 16 14 32 32 H 1.08998 * 109.91823 * 213.36433 * 17 16 14 33 33 H 1.08996 * 110.70632 * 116.43386 * 18 17 16 34 34 H 1.08999 * 110.71078 * 239.68336 * 18 17 16 35 35 H 1.08998 * 109.92676 * 304.59463 * 21 11 10 36 36 H 1.09004 * 109.92453 * 65.79655 * 21 11 10 37 37 H 1.09000 * 117.49486 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.49867 * 145.02014 * 22 9 7 39 39 H 1.09004 * 117.49997 * 214.97837 * 23 9 7 40 40 H 1.08999 * 117.50012 * 359.97274 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0715 -1.2016 -0.1665 9 6 1.2703 -2.4880 0.2402 10 6 0.0595 -2.7365 -0.6615 11 7 0.4909 -2.7585 -2.0655 12 6 1.4223 -3.8603 -2.3108 13 6 1.8547 -3.9227 -3.7860 14 6 2.4445 -2.5716 -4.1336 15 1 3.2597 -2.3398 -3.4481 16 8 2.8667 -2.3467 -5.4722 17 6 2.9615 -0.9044 -5.6017 18 6 1.9633 -0.2896 -4.5854 19 6 1.3065 -1.5242 -3.9663 20 1 0.4199 -1.8191 -4.5275 21 6 1.0107 -1.4400 -2.4801 22 6 1.1967 -3.0024 1.6793 23 6 2.0992 -3.7032 0.6608 24 1 -0.4849 0.8368 -0.0739 25 1 -0.3940 -3.6939 -0.4052 26 1 -0.6701 -1.9395 -0.5180 27 1 2.3057 -3.7245 -1.6870 28 1 0.9400 -4.8000 -2.0418 29 1 2.6051 -4.7016 -3.9208 30 1 0.9905 -4.1261 -4.4183 31 1 3.9751 -0.5767 -5.3712 32 1 2.6958 -0.6043 -6.6154 33 1 2.4914 0.2937 -3.8312 34 1 1.2201 0.3222 -5.0968 35 1 0.2622 -0.6701 -2.2931 36 1 1.9247 -1.2119 -1.9317 37 1 1.6799 -2.4050 2.4526 38 1 0.2859 -3.5182 1.9835 39 1 1.7818 -4.6799 0.2953 40 1 3.1757 -3.5670 0.7636 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724834666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:02 Heat of formation + Delta-G solvation = -20.515927 kcal Electronic energy + Delta-G solvation = -20357.478454 eV Core-core repulsion = 17558.567329 eV Total energy + Delta-G solvation = -2798.911125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38217 -39.35729 -36.67788 -34.39628 -33.31318 -32.56386 -29.58897 -27.71281 -26.98555 -24.18686 -23.21146 -22.96730 -22.05573 -21.06736 -20.58587 -18.11703 -17.00629 -16.76568 -16.61910 -16.35924 -16.03154 -15.49528 -15.40717 -15.07057 -14.36816 -14.01156 -13.73030 -13.41157 -13.27299 -13.12331 -12.89021 -12.72840 -12.40217 -12.31678 -12.09561 -11.97964 -11.81800 -11.70188 -11.56884 -11.24314 -10.99724 -10.67759 -10.64374 -10.42455 -9.95872 -8.72025 -8.02412 -6.03203 1.36834 1.43138 1.48609 2.39850 2.79894 3.05848 3.40716 3.61075 3.80049 3.81738 4.02830 4.20521 4.23816 4.35665 4.45720 4.53688 4.58987 4.66399 4.72078 4.81868 4.88307 4.90801 4.92789 4.95190 5.01201 5.04728 5.11749 5.17751 5.22073 5.32626 5.44504 5.51752 5.61053 5.64613 5.87990 5.97119 6.01176 6.37248 6.61076 6.76982 6.85634 7.45854 8.94467 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.011053 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.268557 B = 2532.710415 C = 3506.028715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.048 3.952 3 Si 0.924 3.076 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.493 4.493 8 H 0.042 0.958 9 C 0.001 3.999 10 C 0.102 3.898 11 N -0.538 5.538 12 C 0.063 3.937 13 C -0.094 4.094 14 C 0.073 3.927 15 H 0.044 0.956 16 O -0.387 6.387 17 C 0.048 3.952 18 C -0.147 4.147 19 C -0.124 4.124 20 H 0.076 0.924 21 C 0.074 3.926 22 C -0.201 4.201 23 C -0.187 4.187 24 H 0.262 0.738 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -2.838 -7.625 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.154 4.154 3 Si 0.750 3.250 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.000 4.000 10 C -0.026 4.026 11 N -0.261 5.261 12 C -0.065 4.065 13 C -0.132 4.132 14 C 0.015 3.985 15 H 0.062 0.938 16 O -0.306 6.306 17 C -0.028 4.028 18 C -0.185 4.185 19 C -0.143 4.143 20 H 0.094 0.906 21 C -0.054 4.054 22 C -0.239 4.239 23 C -0.224 4.224 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.187 -2.953 -8.009 8.812 hybrid contribution 1.054 1.354 1.162 2.072 sum 3.241 -1.600 -6.847 7.742 Atomic orbital electron populations 1.69908 1.06504 1.27035 1.48860 1.25297 0.95237 1.00473 0.94403 0.86076 0.78945 0.81237 0.78720 1.19305 1.21136 1.20356 1.20336 0.93012 0.90536 1.49139 0.93961 1.19791 0.96119 0.91669 0.92453 1.21619 0.96471 0.99143 0.85341 1.61598 1.40682 1.03906 1.19922 1.21963 0.95187 0.94821 0.94577 1.21366 1.00631 0.95011 0.96184 1.22538 0.94770 0.97637 0.83508 0.93831 1.88656 1.88969 1.23454 1.29569 1.23721 0.98900 0.79555 1.00634 1.22639 0.99241 0.97861 0.98771 1.22586 0.98317 0.95589 0.97834 0.90592 1.22108 1.01737 0.90299 0.91226 1.22858 1.00517 1.05276 0.95284 1.22867 0.96415 0.97049 1.06067 0.92828 0.94336 0.89452 0.95316 0.90677 0.89832 0.90661 0.91546 0.87622 0.91740 0.89292 0.92781 0.90894 0.91890 0.90598 0.89505 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.79 9.80 21.45 0.21 -45.58 16 2 C 0.05 2.40 3.85 84.66 0.33 2.72 16 3 Si 0.92 40.51 29.55 68.60 2.03 42.53 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.49 -24.80 5.66 25.60 0.14 -24.66 16 8 H 0.04 2.21 7.84 -2.91 -0.02 2.18 16 9 C 0.00 0.06 1.25 -52.93 -0.07 0.00 16 10 C 0.10 4.59 5.06 86.30 0.44 5.03 16 11 N -0.54 -22.19 4.71 -896.35 -4.22 -26.41 16 12 C 0.06 2.25 4.61 86.70 0.40 2.65 16 13 C -0.09 -2.98 6.11 30.38 0.19 -2.79 16 14 C 0.07 2.52 2.78 30.97 0.09 2.61 16 15 H 0.04 1.64 7.98 -2.38 -0.02 1.62 16 16 O -0.39 -12.68 11.51 -148.98 -1.71 -14.40 16 17 C 0.05 1.30 7.72 72.72 0.56 1.86 16 18 C -0.15 -4.50 6.68 31.31 0.21 -4.29 16 19 C -0.12 -4.44 2.80 -10.34 -0.03 -4.47 16 20 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 21 C 0.07 3.13 3.42 85.75 0.29 3.42 16 22 C -0.20 -8.78 9.95 30.62 0.30 -8.48 16 23 C -0.19 -7.60 7.95 30.62 0.24 -7.36 16 24 H 0.26 13.13 8.32 -92.71 -0.77 12.35 16 25 H 0.04 1.62 8.11 -2.39 -0.02 1.60 16 26 H 0.09 4.45 5.91 -2.39 -0.01 4.44 16 27 H 0.03 1.12 5.84 -2.39 -0.01 1.10 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 29 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 2.58 6.72 -2.39 -0.02 2.56 16 36 H 0.07 3.46 4.43 -2.38 -0.01 3.45 16 37 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.08 3.10 8.14 -2.39 -0.02 3.09 16 39 H 0.09 3.17 7.82 -2.39 -0.02 3.15 16 40 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -52.68 297.13 0.40 -52.28 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 1.00 Total: 25.33 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.10 Total: -33.76 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -4.01 Total: -71.99 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.71 Total: -14.40 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -52.68 0.40 -52.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724834666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.761 kcal (2) G-P(sol) polarization free energy of solvation -52.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds