Wall clock time and date at job start Mon Mar 30 2020 03:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46988 * 41.51573 * 3 2 1 5 5 H 1.08997 * 109.50526 * 54.92112 * 4 3 2 6 6 C 1.53112 * 109.53732 * 294.82048 * 4 3 2 7 7 C 1.53116 * 109.16530 * 182.38904 * 6 4 3 8 8 C 1.53040 * 109.27890 * 57.65307 * 7 6 4 9 9 N 1.46846 * 109.52260 * 300.82457 * 8 7 6 10 10 C 1.46900 * 111.00424 * 185.83769 * 9 8 7 11 11 C 1.53002 * 109.46894 * 52.03339 * 10 9 8 12 12 O 1.42902 * 109.47004 * 62.32276 * 11 10 9 13 13 C 1.42899 * 114.00206 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47322 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00140 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00130 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00223 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47104 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47512 * 119.99754 * 18 16 14 21 21 H 1.48497 * 109.47409 * 239.99994 * 18 16 14 22 22 C 1.46851 * 111.19746 * 61.74119 * 9 8 7 23 23 H 4.44643 * 5.63302 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47072 * 281.50923 * 3 2 1 25 25 H 1.09001 * 109.46573 * 161.51569 * 3 2 1 26 26 H 1.09000 * 109.52540 * 302.29650 * 6 4 3 27 27 H 1.08996 * 109.52179 * 62.41507 * 6 4 3 28 28 H 1.08994 * 109.50605 * 177.59603 * 7 6 4 29 29 H 1.09003 * 109.49982 * 297.67625 * 7 6 4 30 30 H 1.09001 * 109.46355 * 180.80850 * 8 7 6 31 31 H 1.08999 * 109.46286 * 60.83957 * 8 7 6 32 32 H 1.08997 * 109.47065 * 292.03917 * 10 9 8 33 33 H 1.08990 * 109.47604 * 172.03677 * 10 9 8 34 34 H 1.08996 * 109.47349 * 182.32526 * 11 10 9 35 35 H 1.09000 * 109.47348 * 302.32651 * 11 10 9 36 36 H 1.09001 * 109.46964 * 300.00371 * 13 12 11 37 37 H 1.09003 * 109.46866 * 60.00306 * 13 12 11 38 38 H 0.96994 * 120.00045 * 180.02562 * 17 16 14 39 39 H 1.08992 * 109.46185 * 58.27387 * 22 9 8 40 40 H 1.09000 * 109.45911 * 178.25340 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0792 -0.9561 5 1 2.7210 -0.9264 -1.9436 6 6 2.7567 -2.4601 -0.4293 7 6 3.3225 -3.5363 -1.3599 8 6 4.8428 -3.3831 -1.4442 9 7 5.1738 -2.0463 -1.9540 10 6 6.6192 -1.9116 -2.1790 11 6 7.1109 -3.0730 -3.0452 12 8 6.4691 -3.0207 -4.3209 13 6 6.8607 -4.0670 -5.2120 14 6 6.1260 -3.9151 -6.5189 15 1 5.4299 -3.1007 -6.6556 16 6 6.3424 -4.8158 -7.5402 17 7 7.1896 -5.8078 -7.3735 18 14 5.4323 -4.6271 -9.1605 19 1 4.5439 -3.4389 -9.0938 20 1 6.4129 -4.4500 -10.2614 21 1 4.6167 -5.8418 -9.4146 22 6 4.6817 -0.9972 -1.0520 23 1 -1.0498 -0.0001 -0.0003 24 1 3.0094 -0.2042 1.0070 25 1 3.0088 0.9755 -0.3258 26 1 3.1595 -2.5979 0.5742 27 1 1.6699 -2.5379 -0.3992 28 1 3.0774 -4.5229 -0.9668 29 1 2.8891 -3.4226 -2.3536 30 1 5.2473 -4.1389 -2.1174 31 1 5.2763 -3.5111 -0.4523 32 1 7.1391 -1.9274 -1.2211 33 1 6.8216 -0.9686 -2.6867 34 1 8.1900 -2.9959 -3.1779 35 1 6.8715 -4.0175 -2.5566 36 1 7.9346 -4.0101 -5.3896 37 1 6.6164 -5.0323 -4.7684 38 1 7.3420 -6.4412 -8.0921 39 1 5.1158 -1.1363 -0.0620 40 1 4.9689 -0.0201 -1.4405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829815371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:25 Heat of formation + Delta-G solvation = -5.564544 kcal Electronic energy + Delta-G solvation = -18366.108627 eV Core-core repulsion = 15567.845842 eV Total energy + Delta-G solvation = -2798.262784 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31084 -36.78843 -35.12452 -33.02059 -32.46228 -31.33713 -28.99424 -26.93831 -26.63524 -23.93851 -22.53605 -22.24279 -20.60429 -19.60832 -18.14285 -16.36629 -16.17482 -15.56730 -15.26357 -14.59821 -14.53436 -14.25063 -14.17127 -14.04935 -13.42104 -13.01890 -12.96235 -12.49196 -12.27556 -12.01865 -11.65818 -11.27437 -11.07753 -10.83230 -10.76040 -10.66085 -10.58980 -10.41698 -10.34766 -10.10398 -10.02397 -9.80880 -9.02392 -8.75135 -8.10174 -7.98225 -6.06260 -4.06910 2.70483 2.74174 3.32601 3.38969 3.46306 4.00864 4.29874 4.40165 4.73704 4.83123 4.89511 5.02462 5.24772 5.30423 5.36586 5.42428 5.46140 5.53786 5.54701 5.63921 5.67978 5.77893 5.85091 5.92538 5.93249 6.09099 6.10686 6.12655 6.24611 6.34250 6.38975 6.52642 7.14890 7.34266 7.36791 7.48194 7.52258 7.86351 8.22007 8.66713 9.08430 9.57965 11.05529 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.004322 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.187745 B = 6476.417033 C = 7070.263035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.175 4.175 3 C -0.009 4.009 4 C -0.080 4.080 5 H 0.086 0.914 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.052 3.948 9 N -0.523 5.523 10 C 0.063 3.937 11 C 0.060 3.940 12 O -0.378 6.378 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.062 3.938 23 H 0.214 0.786 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.024 0.976 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.029 0.971 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 8.623 16.769 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.175 4.175 3 C -0.046 4.046 4 C -0.099 4.099 5 H 0.104 0.896 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.075 4.075 9 N -0.247 5.247 10 C -0.065 4.065 11 C -0.018 4.018 12 O -0.297 6.297 13 C 0.119 3.881 14 C -0.547 4.547 15 H 0.086 0.914 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.066 4.066 23 H 0.231 0.769 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.253 8.664 16.161 19.719 hybrid contribution 0.075 -0.403 -0.020 0.411 sum -7.178 8.261 16.141 19.501 Atomic orbital electron populations 1.24851 0.95942 1.01522 1.01384 1.23080 0.94496 0.99888 1.00074 1.18797 0.84840 1.00247 1.00759 1.21160 0.95231 0.93946 0.99550 0.89591 1.21633 1.00501 0.94337 0.98558 1.21568 0.95249 0.97898 1.00732 1.22178 0.96083 0.91689 0.97566 1.61754 1.14230 1.02412 1.46308 1.22123 0.87008 1.00262 0.97076 1.22352 0.95556 0.96382 0.87470 1.87973 1.66609 1.52957 1.22205 1.20183 0.94801 0.85060 0.88056 1.21108 1.24605 1.12210 0.96771 0.91437 1.24947 0.95574 0.94974 0.99101 1.69975 1.35481 1.15273 1.33317 0.86303 0.79495 0.78164 0.82675 1.19438 1.20921 1.20904 1.22076 0.94223 0.95973 0.94304 0.76864 0.89827 0.89429 0.92588 0.91985 0.91782 0.90577 0.89516 0.95803 0.94616 0.90074 0.94283 0.94398 0.98025 0.98000 0.92816 0.95316 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.18 19.25 29.55 0.57 -1.61 16 2 C -0.18 -1.90 12.37 -37.12 -0.46 -2.36 16 3 C -0.01 -0.09 5.19 -29.52 -0.15 -0.24 16 4 C -0.08 -0.91 2.32 -90.54 -0.21 -1.12 16 5 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 6 C -0.11 -1.29 5.05 -26.61 -0.13 -1.42 16 7 C -0.12 -1.55 6.09 -26.65 -0.16 -1.71 16 8 C 0.05 0.77 5.04 -3.83 -0.02 0.75 16 9 N -0.52 -8.02 4.67 -234.67 -1.10 -9.12 16 10 C 0.06 0.96 5.52 -3.82 -0.02 0.94 16 11 C 0.06 1.13 5.56 37.16 0.21 1.34 16 12 O -0.38 -9.29 10.23 -35.23 -0.36 -9.66 16 13 C 0.19 5.39 5.69 36.00 0.20 5.60 16 14 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 15 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 18 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.06 0.75 4.74 -3.83 -0.02 0.73 16 23 H 0.21 1.41 7.80 -54.10 -0.42 0.99 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.71 7.48 -51.93 -0.39 0.32 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.47 5.79 -51.93 -0.30 1.17 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -32.31 327.98 -8.31 -40.62 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.89 Total: -4.22 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.62 Total: -13.18 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.36 Total: -35.68 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.66 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.31 -8.31 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829815371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.051 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds