Wall clock time and date at job start Mon Mar 30 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48500 * 109.47286 * 273.67091 * 3 2 1 5 5 H 1.48506 * 109.47168 * 33.67236 * 3 2 1 6 6 H 1.48501 * 109.47004 * 153.67007 * 3 2 1 7 7 C 1.37876 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99947 * 353.96114 * 7 2 1 9 9 C 1.50695 * 120.00275 * 174.23903 * 7 2 1 10 10 C 1.53010 * 115.54633 * 294.55476 * 9 7 2 11 11 N 1.46494 * 109.47284 * 294.93299 * 10 9 7 12 12 C 1.37482 * 120.00181 * 184.18929 * 11 10 9 13 13 N 1.30344 * 119.99808 * 4.95781 * 12 11 10 14 14 N 1.37486 * 120.00398 * 184.96023 * 12 11 10 15 15 C 1.46497 * 119.99995 * 185.21101 * 14 12 11 16 16 C 1.52997 * 109.46888 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47115 * 180.02562 * 16 15 14 18 18 C 1.53003 * 117.50109 * 243.74457 * 17 16 15 19 19 C 1.53007 * 117.50034 * 175.08651 * 17 16 15 20 20 C 1.52995 * 117.50523 * 148.88679 * 9 7 2 21 21 C 1.52994 * 117.50224 * 80.22170 * 9 7 2 22 22 H 0.97003 * 120.00367 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46724 * 54.93703 * 10 9 7 24 24 H 1.09005 * 109.47045 * 174.92646 * 10 9 7 25 25 H 0.96998 * 120.00183 * 4.18574 * 11 10 9 26 26 H 0.97002 * 120.00266 * 179.97438 * 13 12 11 27 27 H 0.97003 * 119.99435 * 5.21518 * 14 12 11 28 28 H 1.09001 * 109.47557 * 299.99974 * 15 14 12 29 29 H 1.09002 * 109.47063 * 60.00515 * 15 14 12 30 30 H 1.09004 * 109.47621 * 299.99943 * 16 15 14 31 31 H 1.09008 * 109.47281 * 60.00336 * 16 15 14 32 32 H 1.09001 * 115.55262 * 29.42055 * 17 16 15 33 33 H 1.09001 * 117.49820 * 0.02562 * 18 17 16 34 34 H 1.09002 * 117.49936 * 145.01845 * 18 17 16 35 35 H 1.08996 * 117.50073 * 214.97841 * 19 17 16 36 36 H 1.08998 * 117.49623 * 0.02562 * 19 17 16 37 37 H 1.09007 * 117.49459 * 359.97438 * 20 9 7 38 38 H 1.08999 * 117.50420 * 145.01728 * 20 9 7 39 39 H 1.08996 * 117.50594 * 214.97981 * 21 9 7 40 40 H 1.09003 * 117.49753 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4190 2.0913 -1.3972 5 1 1.4875 2.6290 0.7763 6 1 3.5833 1.4190 0.6210 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0974 9 6 3.5058 -1.1973 -0.1315 10 6 4.0527 -0.6882 -1.4668 11 7 3.6411 -1.5954 -2.5409 12 6 4.0885 -1.3889 -3.8244 13 7 4.9543 -0.4457 -4.0689 14 7 3.6227 -2.1771 -4.8500 15 6 4.1826 -2.0340 -6.1962 16 6 3.4944 -3.0200 -7.1422 17 6 4.0796 -2.8710 -8.5480 18 6 3.1400 -2.3945 -9.6575 19 6 3.6023 -3.8533 -9.6197 20 6 4.2731 -2.3243 0.5625 21 6 4.3254 -0.9021 1.1262 22 1 -0.4851 0.8400 0.0004 23 1 3.6603 0.3095 -1.6634 24 1 5.1411 -0.6482 -1.4220 25 1 3.0529 -2.3418 -2.3465 26 1 5.2702 -0.3001 -4.9743 27 1 2.9232 -2.8279 -4.6822 28 1 4.0196 -1.0164 -6.5513 29 1 5.2521 -2.2424 -6.1689 30 1 3.6570 -4.0378 -6.7874 31 1 2.4249 -2.8112 -7.1694 32 1 5.1181 -2.5431 -8.5926 33 1 2.1050 -2.1867 -9.3858 34 1 3.5605 -1.7533 -10.4322 35 1 4.3266 -4.1711 -10.3695 36 1 2.8711 -4.6053 -9.3232 37 1 3.6921 -3.0633 1.1144 38 1 5.1678 -2.7029 0.0682 39 1 5.2544 -0.3457 1.0025 40 1 3.7787 -0.7051 2.0484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864464763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:15 Heat of formation + Delta-G solvation = 55.024462 kcal Electronic energy + Delta-G solvation = -18102.452633 eV Core-core repulsion = 15339.109936 eV Total energy + Delta-G solvation = -2763.342697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86611 -38.87064 -38.06311 -35.16208 -34.23675 -32.41109 -30.52482 -28.29274 -26.79024 -24.25956 -23.21889 -23.14974 -21.55866 -21.15668 -20.84760 -18.94170 -18.09764 -17.15933 -16.91225 -16.52830 -16.00959 -15.70125 -15.45556 -15.11327 -14.79508 -14.66888 -14.47334 -13.87963 -13.48057 -12.96347 -12.95731 -12.72043 -12.38669 -12.29103 -12.17193 -12.09291 -12.00275 -11.37006 -11.16536 -10.94398 -10.81092 -10.60559 -10.40555 -10.17184 -9.47229 -8.87281 -8.28570 -6.31722 1.36427 1.41793 1.52979 1.94612 2.23983 2.38918 2.88803 2.99224 3.22308 3.45978 3.72191 3.95321 4.01066 4.12645 4.22203 4.30310 4.40786 4.47963 4.51808 4.63845 4.71207 4.80399 4.83525 4.93476 4.95485 5.05259 5.06814 5.09058 5.15696 5.27066 5.34995 5.36284 5.55603 5.69030 5.74035 6.24617 6.32046 6.59788 6.74933 7.22294 7.37212 8.03707 8.85824 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.028049 B = 0.004333 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.008765 B = 6460.149201 C = 6762.092602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.033 3.967 3 Si 0.921 3.079 4 H -0.290 1.290 5 H -0.298 1.298 6 H -0.223 1.223 7 C -0.474 4.474 8 H 0.042 0.958 9 C -0.043 4.043 10 C 0.200 3.800 11 N -0.708 5.708 12 C 0.631 3.369 13 N -0.869 5.869 14 N -0.770 5.770 15 C 0.138 3.862 16 C -0.087 4.087 17 C -0.158 4.158 18 C -0.186 4.186 19 C -0.174 4.174 20 C -0.156 4.156 21 C -0.182 4.182 22 H 0.263 0.737 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.408 0.592 26 H 0.336 0.664 27 H 0.397 0.603 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -7.185 -15.537 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.165 4.165 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.145 1.145 7 C -0.512 4.512 8 H 0.061 0.939 9 C -0.045 4.045 10 C 0.075 3.925 11 N -0.349 5.349 12 C 0.264 3.736 13 N -0.522 5.522 14 N -0.416 5.416 15 C 0.014 3.986 16 C -0.125 4.125 17 C -0.176 4.176 18 C -0.223 4.223 19 C -0.211 4.211 20 C -0.193 4.193 21 C -0.220 4.220 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.244 0.756 26 H 0.152 0.848 27 H 0.232 0.768 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.617 -6.226 -14.951 18.835 hybrid contribution -1.027 0.079 -0.683 1.236 sum 8.590 -6.148 -15.633 18.867 Atomic orbital electron populations 1.70020 1.08025 1.27739 1.52510 1.25568 0.94934 1.02172 0.93872 0.86163 0.81501 0.79870 0.77716 1.21670 1.22518 1.14516 1.20380 0.89090 0.92797 1.48884 0.93948 1.19538 0.92421 1.02478 0.90033 1.20497 0.96566 0.90688 0.84748 1.43764 1.54319 1.33410 1.03451 1.18989 0.86991 0.85583 0.82021 1.69761 1.26843 1.26865 1.28732 1.45447 1.44768 1.43802 1.07623 1.21202 0.97657 0.99567 0.80209 1.21212 0.99711 0.99203 0.92345 1.22177 0.99712 1.05795 0.89943 1.23138 0.99768 0.97911 1.01483 1.23053 1.03856 0.92786 1.01360 1.22807 1.01493 0.91114 1.03844 1.23061 1.01382 0.99302 0.98227 0.92793 0.96003 0.92749 0.75636 0.84829 0.76806 0.93137 0.92135 0.90159 0.91243 0.87158 0.89014 0.88218 0.87804 0.88459 0.89855 0.88406 0.88935 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.96 21.45 0.30 -57.50 16 2 C 0.03 1.86 5.47 84.65 0.46 2.33 16 3 Si 0.92 45.18 24.98 68.60 1.71 46.90 16 4 H -0.29 -14.72 7.03 99.48 0.70 -14.02 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 6 H -0.22 -9.88 5.72 99.48 0.57 -9.31 16 7 C -0.47 -25.42 9.15 25.60 0.23 -25.19 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 C -0.04 -1.90 0.84 -52.93 -0.04 -1.94 16 10 C 0.20 8.53 5.15 86.38 0.44 8.97 16 11 N -0.71 -27.17 5.59 -349.40 -1.95 -29.12 16 12 C 0.63 22.35 8.70 260.53 2.27 24.62 16 13 N -0.87 -33.00 13.20 -58.53 -0.77 -33.77 16 14 N -0.77 -20.46 5.67 -349.41 -1.98 -22.44 16 15 C 0.14 2.90 5.01 86.38 0.43 3.34 16 16 C -0.09 -1.39 5.61 30.59 0.17 -1.21 16 17 C -0.16 -2.24 5.73 -10.79 -0.06 -2.30 16 18 C -0.19 -2.55 10.18 30.62 0.31 -2.24 16 19 C -0.17 -2.14 10.26 30.62 0.31 -1.83 16 20 C -0.16 -5.70 9.96 30.62 0.30 -5.40 16 21 C -0.18 -7.09 8.02 30.62 0.25 -6.84 16 22 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 23 H 0.02 1.06 5.07 -2.39 -0.01 1.04 16 24 H 0.05 2.23 8.06 -2.38 -0.02 2.21 16 25 H 0.41 15.03 8.44 -92.71 -0.78 14.25 16 26 H 0.34 11.26 7.15 -92.71 -0.66 10.60 16 27 H 0.40 9.36 8.58 -92.71 -0.80 8.57 16 28 H 0.05 1.15 7.80 -2.39 -0.02 1.14 16 29 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.15 7.88 -2.38 -0.02 1.13 16 32 H 0.11 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.09 1.31 8.03 -2.39 -0.02 1.30 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -64.73 326.03 1.05 -63.68 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -1.34 Total: 39.95 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.08 Total: -7.70 kcal Atomic # 7 Polarization: -138.43 SS G_CDS: -4.41 Total: -142.83 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.71 Total: 46.90 kcal Total: -64.73 1.05 -63.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864464763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.706 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds