Wall clock time and date at job start Mon Mar 30 2020 04:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46978 * 2 1 4 4 C 1.50696 * 109.47193 * 119.99920 * 2 1 3 5 5 H 1.07998 * 120.00393 * 114.18276 * 4 2 1 6 6 C 1.37880 * 120.00075 * 294.18706 * 4 2 1 7 7 N 1.31512 * 120.00482 * 156.58241 * 6 4 2 8 8 Si 1.86802 * 119.99756 * 336.85427 * 6 4 2 9 9 H 1.48496 * 109.47437 * 179.72440 * 8 6 4 10 10 H 1.48497 * 109.47381 * 299.72973 * 8 6 4 11 11 H 1.48508 * 109.46787 * 59.72748 * 8 6 4 12 12 N 1.46501 * 109.47127 * 240.00088 * 2 1 3 13 13 N 1.40103 * 120.00274 * 90.00299 * 12 2 1 14 14 C 1.28009 * 119.99688 * 185.10765 * 13 12 2 15 15 C 1.51417 * 121.02202 * 185.45778 * 14 13 12 16 16 C 1.53323 * 108.15163 * 130.69830 * 15 14 13 17 17 H 1.09004 * 109.49870 * 172.16030 * 16 15 14 18 18 C 1.53002 * 109.40490 * 292.26655 * 16 15 14 19 19 C 1.53125 * 109.22927 * 62.72309 * 18 16 15 20 20 C 1.53046 * 109.16084 * 58.06759 * 19 18 16 21 21 N 1.46720 * 109.56743 * 300.43560 * 20 19 18 22 22 C 1.46579 * 111.01114 * 296.09792 * 21 20 19 23 23 C 1.46679 * 111.61032 * 61.10752 * 21 20 19 24 24 H 1.09004 * 109.47209 * 173.81996 * 1 2 3 25 25 H 1.08992 * 109.47633 * 293.82006 * 1 2 3 26 26 H 1.09006 * 109.46983 * 53.82002 * 1 2 3 27 27 H 0.96998 * 119.99561 * 355.21826 * 7 6 4 28 28 H 0.97002 * 119.99646 * 269.99409 * 12 2 1 29 29 H 1.09004 * 109.72410 * 250.36520 * 15 14 13 30 30 H 1.09000 * 109.72391 * 10.98362 * 15 14 13 31 31 H 1.08998 * 109.51029 * 182.65377 * 18 16 15 32 32 H 1.09003 * 109.51306 * 302.79912 * 18 16 15 33 33 H 1.08997 * 109.52139 * 298.16060 * 19 18 16 34 34 H 1.09001 * 109.57418 * 178.00209 * 19 18 16 35 35 H 1.08998 * 109.45904 * 180.40383 * 20 19 18 36 36 H 1.08998 * 109.44126 * 60.45163 * 20 19 18 37 37 H 1.09002 * 109.55505 * 309.62725 * 22 21 20 38 38 H 1.09004 * 109.43364 * 189.23969 * 22 21 20 39 39 H 1.09001 * 109.35067 * 179.57313 * 23 21 20 40 40 H 1.09005 * 109.34471 * 60.03211 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5736 -1.6400 1.1342 6 6 1.8009 -0.1736 2.4792 7 7 1.8048 -0.9507 3.5401 8 14 1.4743 1.6564 2.6632 9 1 1.2511 1.9779 4.0956 10 1 2.6439 2.4211 2.1607 11 1 0.2680 2.0252 1.8794 12 7 2.0183 -0.6906 -1.1962 13 7 2.2519 0.0299 -2.3748 14 6 2.5843 -0.5864 -3.4464 15 6 2.9610 0.1752 -4.6997 16 6 4.2819 -0.3971 -5.2275 17 1 4.5033 0.0380 -6.2022 18 6 5.4087 -0.0613 -4.2484 19 6 5.1242 -0.7338 -2.9024 20 6 5.0007 -2.2448 -3.1119 21 7 3.9082 -2.5230 -4.0509 22 6 2.6189 -2.0982 -3.4980 23 6 4.1558 -1.9158 -5.3629 24 1 -0.3634 -1.0217 -0.1106 25 1 -0.3634 0.4150 0.9400 26 1 -0.3633 0.6067 -0.8295 27 1 1.9012 -1.9105 3.4378 28 1 2.1801 -1.6467 -1.1721 29 1 2.1812 0.0548 -5.4518 30 1 3.0850 1.2323 -4.4645 31 1 6.3562 -0.4263 -4.6447 32 1 5.4624 1.0187 -4.1116 33 1 4.1924 -0.3457 -2.4911 34 1 5.9413 -0.5274 -2.2112 35 1 4.7910 -2.7277 -2.1575 36 1 5.9353 -2.6324 -3.5173 37 1 2.5026 -2.5015 -2.4920 38 1 1.8133 -2.4613 -4.1361 39 1 3.3279 -2.1511 -6.0318 40 1 5.0790 -2.3191 -5.7791 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905456612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:45 Heat of formation + Delta-G solvation = 52.986617 kcal Electronic energy + Delta-G solvation = -19590.820070 eV Core-core repulsion = 16827.389006 eV Total energy + Delta-G solvation = -2763.431064 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72517 -36.49267 -34.14560 -33.37406 -32.06577 -31.40722 -28.85174 -26.66322 -25.98563 -24.66382 -23.07065 -22.25790 -20.25511 -19.63153 -18.51390 -17.64040 -16.57758 -15.30692 -15.04140 -14.63990 -14.61834 -14.25160 -13.56631 -13.39733 -13.08229 -12.73319 -12.61214 -12.37960 -12.23083 -11.85524 -11.57495 -11.42895 -11.29627 -11.24103 -11.19266 -10.84495 -10.50282 -10.25628 -10.12184 -9.91148 -9.77905 -9.58207 -9.05929 -8.28324 -7.99079 -6.99365 -6.55367 -4.17826 2.74721 3.37527 3.42661 3.58189 3.76933 4.09315 4.43704 4.71590 4.79606 4.87547 5.11015 5.12579 5.21580 5.28204 5.36742 5.42525 5.53056 5.63538 5.73165 5.81914 5.86427 5.96501 6.02466 6.12995 6.19550 6.19774 6.34265 6.39040 6.60025 6.60708 6.70929 6.77335 7.05766 7.15527 7.20586 7.40495 7.93592 8.08231 8.29796 8.83334 9.28165 9.47938 10.79857 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.005901 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.758169 B = 4743.813307 C = 4831.517501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.280 3.720 3 H 0.031 0.969 4 C -0.619 4.619 5 H 0.059 0.941 6 C 0.045 3.955 7 N -0.892 5.892 8 Si 1.036 2.964 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.633 5.633 13 N -0.215 5.215 14 C -0.019 4.019 15 C -0.042 4.042 16 C -0.118 4.118 17 H 0.077 0.923 18 C -0.105 4.105 19 C -0.188 4.188 20 C 0.058 3.942 21 N -0.527 5.527 22 C 0.069 3.931 23 C 0.062 3.938 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.270 0.730 28 H 0.371 0.629 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 0.065 -17.364 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.176 3.824 3 H 0.048 0.952 4 C -0.658 4.658 5 H 0.077 0.923 6 C -0.163 4.163 7 N -0.524 5.524 8 Si 0.863 3.137 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.201 1.201 12 N -0.371 5.371 13 N -0.025 5.025 14 C -0.213 4.213 15 C -0.081 4.081 16 C -0.139 4.139 17 H 0.096 0.904 18 C -0.143 4.143 19 C -0.227 4.227 20 C -0.070 4.070 21 N -0.249 5.249 22 C -0.062 4.062 23 C -0.066 4.066 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.210 0.790 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.728 1.718 -15.726 16.253 hybrid contribution 0.495 -1.567 -1.099 1.977 sum 4.222 0.151 -16.826 17.348 Atomic orbital electron populations 1.22561 0.99905 0.99835 0.99496 1.18681 0.89299 0.93520 0.80883 0.95157 1.22023 1.41770 1.11047 0.90953 0.92252 1.25634 0.93113 1.05903 0.91639 1.70860 1.43292 1.06455 1.31793 0.84153 0.77493 0.75771 0.76243 1.20890 1.20768 1.20107 1.48670 1.74772 1.08039 1.05641 1.73497 1.06690 1.28336 0.93981 1.24747 1.07069 0.94780 0.94732 1.20373 0.96018 0.98979 0.92761 1.21740 0.95321 0.97741 0.99142 0.90448 1.21459 0.97196 1.00368 0.95280 1.22691 1.05202 0.97216 0.97582 1.22072 0.94053 0.94722 0.96148 1.62048 1.02145 1.57336 1.03326 1.21544 0.92179 0.91653 1.00792 1.22017 1.01904 0.91556 0.91166 0.93995 0.92515 0.95692 0.91980 0.78987 0.90899 0.90669 0.92537 0.92110 0.87773 0.92203 0.91039 0.91211 0.90417 0.89736 0.90742 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.24 37.16 0.34 -3.28 16 2 C 0.28 6.83 2.83 -69.08 -0.20 6.64 16 3 H 0.03 0.78 6.71 -51.93 -0.35 0.43 16 4 C -0.62 -17.11 8.95 -34.44 -0.31 -17.42 16 5 H 0.06 1.75 8.01 -52.49 -0.42 1.33 16 6 C 0.04 1.26 5.20 -17.82 -0.09 1.16 16 7 N -0.89 -26.68 13.70 55.43 0.76 -25.92 16 8 Si 1.04 24.88 26.45 -169.99 -4.50 20.39 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.17 6.14 56.52 0.35 -5.82 16 12 N -0.63 -13.66 5.88 -5.88 -0.03 -13.69 16 13 N -0.21 -4.18 10.21 35.92 0.37 -3.81 16 14 C -0.02 -0.30 3.94 -78.26 -0.31 -0.61 16 15 C -0.04 -0.53 5.68 -27.36 -0.16 -0.68 16 16 C -0.12 -1.29 3.22 -90.45 -0.29 -1.58 16 17 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.11 -1.28 5.49 -26.67 -0.15 -1.43 16 19 C -0.19 -2.79 5.61 -26.64 -0.15 -2.94 16 20 C 0.06 0.81 5.81 -3.90 -0.02 0.78 16 21 N -0.53 -7.01 5.13 -236.28 -1.21 -8.22 16 22 C 0.07 1.02 5.77 -4.85 -0.03 0.99 16 23 C 0.06 0.67 5.53 -3.95 -0.02 0.65 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.32 5.49 -51.93 -0.29 1.03 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 28 H 0.37 7.80 6.11 -182.59 -1.11 6.69 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.84 3.68 -51.93 -0.19 1.65 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.27 5.47 -51.93 -0.28 0.99 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -28.96 298.93 -8.83 -37.79 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.34 Total: 6.67 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.38 Total: -17.71 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.12 Total: -51.64 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.50 Total: 20.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.96 -8.83 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905456612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.777 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds