Wall clock time and date at job start Mon Mar 30 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47330 * 147.28517 * 3 2 1 5 5 C 1.36941 * 120.00280 * 264.03740 * 4 3 2 6 6 H 1.07999 * 120.00356 * 199.27097 * 5 4 3 7 7 C 1.38814 * 119.99513 * 19.26439 * 5 4 3 8 8 N 1.31618 * 120.00354 * 22.36995 * 7 5 4 9 9 Si 1.86804 * 119.99652 * 202.36607 * 7 5 4 10 10 H 1.48502 * 109.47311 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47225 * 120.00448 * 9 7 5 12 12 H 1.48501 * 109.46831 * 240.00417 * 9 7 5 13 13 C 1.46504 * 120.00042 * 84.03010 * 4 3 2 14 14 C 1.52995 * 109.46744 * 90.00222 * 13 4 3 15 15 H 1.09001 * 109.54618 * 54.82518 * 14 13 4 16 16 C 1.53181 * 109.54400 * 175.00032 * 14 13 4 17 17 C 1.53095 * 109.16599 * 176.84774 * 16 14 13 18 18 H 1.08998 * 109.47982 * 62.37221 * 17 16 14 19 19 C 1.53001 * 109.48121 * 182.39736 * 17 16 14 20 20 O 1.42907 * 109.41327 * 302.39109 * 17 16 14 21 21 C 1.42908 * 114.09472 * 61.15944 * 20 17 16 22 22 H 1.08994 * 109.48393 * 58.83607 * 21 20 17 23 23 C 1.53001 * 109.47715 * 178.85627 * 21 20 17 24 24 C 1.53093 * 109.41646 * 298.83915 * 21 20 17 25 25 H 4.40645 * 5.51426 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.46727 * 27.28040 * 3 2 1 27 27 H 1.09000 * 109.47068 * 267.29261 * 3 2 1 28 28 H 0.97001 * 120.00095 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47081 * 210.00257 * 13 4 3 30 30 H 1.08992 * 109.47281 * 330.00482 * 13 4 3 31 31 H 1.08995 * 109.51938 * 296.75365 * 16 14 13 32 32 H 1.08998 * 109.51974 * 56.88028 * 16 14 13 33 33 H 1.08999 * 109.46981 * 59.99819 * 19 17 16 34 34 H 1.08997 * 109.46808 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.46831 * 300.00312 * 19 17 16 36 36 H 1.09004 * 109.47133 * 60.00017 * 23 21 20 37 37 H 1.09002 * 109.46872 * 179.97438 * 23 21 20 38 38 H 1.08997 * 109.47500 * 299.99998 * 23 21 20 39 39 H 1.09001 * 109.52278 * 297.70671 * 24 21 20 40 40 H 1.08993 * 109.52382 * 177.52087 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1629 -0.7464 5 6 3.4783 1.0342 -2.0656 6 1 4.1149 1.7716 -2.5319 7 6 3.0094 -0.0441 -2.8033 8 7 1.9255 -0.6837 -2.4178 9 14 3.9166 -0.5874 -4.3432 10 1 5.0960 0.2890 -4.5581 11 1 4.3677 -1.9930 -4.1820 12 1 3.0075 -0.4904 -5.5134 13 6 3.2531 2.4630 -0.0818 14 6 4.6473 2.5948 0.5342 15 1 5.4026 2.4263 -0.2334 16 6 4.8176 3.9996 1.1209 17 6 6.1844 4.0968 1.8037 18 1 6.9715 3.9495 1.0642 19 6 6.3379 5.4778 2.4441 20 8 6.2841 3.0896 2.8127 21 6 6.1797 1.7538 2.3159 22 1 6.9668 1.5758 1.5832 23 6 6.3282 0.7656 3.4745 24 6 4.8127 1.5624 1.6537 25 1 -1.0502 -0.0002 0.0003 26 1 3.0097 -0.9126 -0.4710 27 1 3.0093 0.0494 1.0265 28 1 1.5981 -1.4374 -2.9331 29 1 3.1011 3.2591 -0.8107 30 1 2.5005 2.5404 0.7028 31 1 4.7565 4.7380 0.3215 32 1 4.0305 4.1872 1.8512 33 1 5.5509 5.6247 3.1838 34 1 7.3108 5.5466 2.9305 35 1 6.2608 6.2457 1.6743 36 1 5.5407 0.9434 4.2069 37 1 6.2481 -0.2533 3.0955 38 1 7.3010 0.9026 3.9465 39 1 4.0261 1.7004 2.3955 40 1 4.7480 0.5580 1.2354 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930314829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:31 Heat of formation + Delta-G solvation = 15.563843 kcal Electronic energy + Delta-G solvation = -19274.827618 eV Core-core repulsion = 16477.481029 eV Total energy + Delta-G solvation = -2797.346589 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.44952 -36.37523 -33.64661 -33.42762 -31.52414 -30.76367 -29.42373 -26.62591 -25.92884 -25.51597 -22.28823 -21.59858 -20.38141 -19.64063 -17.39780 -16.34025 -16.26964 -15.41632 -15.10032 -14.64479 -14.15390 -13.88873 -13.46245 -13.18716 -13.05963 -12.49331 -12.30034 -12.18102 -11.89433 -11.74609 -11.54149 -11.45603 -11.24376 -11.00374 -10.76686 -10.69931 -10.37176 -10.22864 -10.01063 -9.95227 -9.82815 -9.21424 -8.89852 -8.63149 -8.40714 -6.92000 -5.76916 -3.19032 3.36070 3.45044 3.46607 3.88118 4.19249 4.41243 4.54869 4.94541 5.05428 5.15622 5.28345 5.34364 5.37823 5.43357 5.61366 5.64793 5.66560 5.79610 5.83282 5.89416 5.90073 5.98363 6.14396 6.17558 6.22344 6.25542 6.37815 6.47576 6.50679 6.61417 6.79101 6.82440 7.00560 7.21453 7.44693 7.53911 7.77619 8.31769 9.12821 9.22898 9.80447 10.28004 11.26198 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.006398 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.342812 B = 4375.272192 C = 4709.225366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.096 4.096 3 C 0.265 3.735 4 N -0.585 5.585 5 C -0.263 4.263 6 H 0.073 0.927 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.156 3.844 14 C -0.108 4.108 15 H 0.070 0.930 16 C -0.142 4.142 17 C 0.088 3.912 18 H 0.053 0.947 19 C -0.143 4.143 20 O -0.384 6.384 21 C 0.086 3.914 22 H 0.053 0.947 23 C -0.142 4.142 24 C -0.137 4.137 25 H 0.189 0.811 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 6.197 9.549 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.099 4.099 3 C 0.140 3.860 4 N -0.304 5.304 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.196 4.196 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.219 1.219 13 C 0.029 3.971 14 C -0.129 4.129 15 H 0.089 0.911 16 C -0.180 4.180 17 C 0.031 3.969 18 H 0.071 0.929 19 C -0.200 4.200 20 O -0.304 6.304 21 C 0.029 3.971 22 H 0.071 0.929 23 C -0.199 4.199 24 C -0.174 4.174 25 H 0.207 0.793 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.249 6.103 9.637 13.515 hybrid contribution -0.078 -0.441 -1.407 1.476 sum 7.171 5.663 8.230 12.297 Atomic orbital electron populations 1.24181 0.95349 1.04806 1.07901 1.24377 0.95412 0.96279 0.93824 1.17862 0.82805 0.92385 0.92970 1.44007 1.74840 1.03182 1.08399 1.19200 1.24340 1.09253 0.86444 0.90909 1.24920 0.96152 1.00632 0.97881 1.70148 1.19488 1.23053 1.40277 0.86333 0.79543 0.78497 0.83072 1.20344 1.21577 1.21934 1.20776 0.92486 0.88647 0.95194 1.21857 1.01726 0.92518 0.96817 0.91108 1.22230 0.97255 0.98441 1.00122 1.22023 0.96585 0.88286 0.90032 0.92940 1.21754 1.02326 0.94668 1.01230 1.87839 1.93822 1.14520 1.34240 1.22120 0.97132 0.82255 0.95613 0.92898 1.21749 1.02110 0.98017 0.98062 1.22275 0.96287 1.01208 0.97673 0.79346 0.89304 0.94042 0.93654 0.93457 0.94571 0.91408 0.91548 0.92024 0.92359 0.91343 0.92069 0.91083 0.92502 0.91984 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.07 19.25 29.55 0.57 -6.50 16 2 C -0.10 -2.37 11.49 -37.12 -0.43 -2.80 16 3 C 0.27 6.21 4.70 -6.83 -0.03 6.18 16 4 N -0.58 -13.98 2.33 -176.58 -0.41 -14.39 16 5 C -0.26 -6.98 9.63 -15.06 -0.14 -7.12 16 6 H 0.07 1.91 7.92 -52.49 -0.42 1.49 16 7 C 0.00 0.09 4.82 -17.43 -0.08 0.01 16 8 N -0.89 -25.27 9.60 55.49 0.53 -24.74 16 9 Si 0.90 21.40 29.61 -169.99 -5.03 16.36 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 C 0.16 3.14 5.16 -4.04 -0.02 3.12 16 14 C -0.11 -1.83 2.48 -90.44 -0.22 -2.05 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.14 -2.03 4.71 -26.59 -0.13 -2.15 16 17 C 0.09 1.18 3.26 -26.68 -0.09 1.09 16 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.14 -1.55 9.57 37.16 0.36 -1.19 16 20 O -0.38 -5.73 10.05 -35.23 -0.35 -6.08 16 21 C 0.09 1.24 3.26 -26.68 -0.09 1.15 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 C -0.14 -1.73 9.56 37.16 0.36 -1.38 16 24 C -0.14 -2.19 3.59 -26.59 -0.10 -2.28 16 25 H 0.19 3.70 7.80 -54.08 -0.42 3.28 16 26 H 0.09 2.28 6.59 -51.93 -0.34 1.93 16 27 H 0.04 0.85 5.78 -51.93 -0.30 0.55 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 30 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.43 6.07 -51.93 -0.32 1.11 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -29.38 320.69 -7.32 -36.70 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.84 Total: 1.23 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.05 Total: -13.92 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.12 Total: -39.13 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.35 Total: -6.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.38 -7.32 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.262 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds