Wall clock time and date at job start Mon Mar 30 2020 04:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99576 * 2 1 4 4 C 1.38753 * 120.05995 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94568 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.97414 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47122 * 339.99736 * 6 5 4 8 8 N 1.46906 * 109.47167 * 219.99524 * 6 5 4 9 9 C 1.50697 * 109.47576 * 99.99391 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00428 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 6 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 6 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.38289 * 120.05705 * 0.24763 * 5 4 3 18 18 C 1.38249 * 120.10771 * 359.49651 * 17 5 4 19 19 C 1.38157 * 120.05572 * 0.50735 * 18 17 5 20 20 N 1.48010 * 120.02820 * 179.77038 * 19 18 17 21 21 O 1.21795 * 119.99756 * 359.97438 * 20 19 18 22 22 O 1.21798 * 120.00207 * 179.97438 * 20 19 18 23 23 H 1.09001 * 109.47096 * 299.99941 * 1 2 3 24 24 H 1.09000 * 109.47143 * 60.00430 * 1 2 3 25 25 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.02389 * 359.97438 * 4 3 2 27 27 H 1.00896 * 111.00309 * 299.99562 * 8 6 5 28 28 H 1.00902 * 110.99923 * 63.95725 * 8 6 5 29 29 H 0.96991 * 120.00258 * 180.02562 * 12 11 9 30 30 H 1.08001 * 119.94641 * 179.72412 * 17 5 4 31 31 H 1.08004 * 119.96727 * 180.23446 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6047 0.0000 6 6 1.1018 4.8698 0.0000 7 1 0.0936 4.6500 -0.3511 8 7 1.7261 5.8573 -0.8907 9 6 1.0363 5.4259 1.3991 10 1 1.5379 4.9146 2.2074 11 6 0.3360 6.5874 1.6473 12 7 0.2793 7.0730 2.8682 13 14 -0.5310 7.4721 0.2490 14 1 -1.9179 6.9569 0.1217 15 1 -0.5684 8.9292 0.5329 16 1 0.2041 7.2335 -1.0191 17 6 3.3018 3.6758 -0.0062 18 6 4.0559 2.5171 -0.0015 19 6 3.4311 1.2849 -0.0010 20 7 4.2390 0.0448 -0.0010 21 8 5.4552 0.1104 -0.0019 22 8 3.6877 -1.0413 -0.0001 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2127 2.3203 0.0005 27 1 2.6624 6.0780 -0.5861 28 1 1.7234 5.5346 -1.8467 29 1 -0.2136 7.8898 3.0428 30 1 3.7921 4.6381 -0.0112 31 1 5.1343 2.5753 -0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309398564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:12 Heat of formation + Delta-G solvation = -7.767389 kcal Electronic energy + Delta-G solvation = -18398.378687 eV Core-core repulsion = 15262.928280 eV Total energy + Delta-G solvation = -3135.450407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86941 -40.17982 -38.05858 -36.13853 -35.06717 -32.20012 -31.02077 -30.29838 -27.57384 -27.00577 -25.57620 -22.82732 -22.41705 -20.57774 -19.22702 -18.36229 -17.34052 -17.24458 -17.02325 -16.12306 -15.82804 -15.11540 -14.94062 -14.53927 -14.12502 -13.76007 -12.95224 -12.71983 -12.61818 -12.04625 -11.84523 -11.43142 -11.36727 -11.22162 -10.94106 -10.82913 -10.79895 -10.49200 -10.21859 -9.59858 -8.98950 -8.76560 -8.49761 -7.53334 -6.23063 -4.37715 0.23168 1.21329 1.70215 1.76296 2.95653 3.33821 3.46268 3.53850 3.74038 4.49183 4.51516 4.68308 5.00140 5.01971 5.05930 5.10414 5.13348 5.30313 5.41696 5.55742 5.63988 5.86173 6.12539 6.25010 6.46866 6.63146 6.73447 7.07513 7.25121 7.84933 8.02922 8.04124 8.38209 8.73641 9.37780 10.85732 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.006101 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.332271 B = 4588.200747 C = 4990.167543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.288 6.288 3 C 0.195 3.805 4 C -0.214 4.214 5 C 0.027 3.973 6 C 0.214 3.786 7 H 0.055 0.945 8 N -0.832 5.832 9 C -0.531 4.531 10 H 0.072 0.928 11 C 0.090 3.910 12 N -0.890 5.890 13 Si 0.867 3.133 14 H -0.295 1.295 15 H -0.301 1.301 16 H -0.192 1.192 17 C -0.153 4.153 18 C -0.023 4.023 19 C -0.103 4.103 20 N 0.046 4.954 21 O -0.196 6.196 22 O -0.154 6.154 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.334 0.666 28 H 0.311 0.689 29 H 0.267 0.733 30 H 0.145 0.855 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -8.594 -8.247 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.199 6.199 3 C 0.146 3.854 4 C -0.234 4.234 5 C 0.024 3.976 6 C 0.104 3.896 7 H 0.072 0.928 8 N -0.361 5.361 9 C -0.569 4.569 10 H 0.090 0.910 11 C -0.116 4.116 12 N -0.526 5.526 13 Si 0.693 3.307 14 H -0.223 1.223 15 H -0.228 1.228 16 H -0.114 1.114 17 C -0.172 4.172 18 C -0.042 4.042 19 C -0.188 4.188 20 N 0.560 4.440 21 O -0.403 6.403 22 O -0.373 6.373 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.166 0.834 27 H 0.148 0.852 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.465 -7.561 -7.914 10.955 hybrid contribution 0.139 -0.408 -0.426 0.606 sum 0.604 -7.969 -8.340 11.551 Atomic orbital electron populations 1.23265 0.77462 1.04620 1.02176 1.86347 1.22121 1.24855 1.86566 1.18691 0.89332 0.86244 0.91176 1.21266 1.00984 0.90422 1.10753 1.21695 0.94772 0.97495 0.83670 1.18814 0.92472 0.83049 0.95247 0.92773 1.60071 1.25837 1.45985 1.04242 1.20574 1.35973 1.10367 0.89962 0.90995 1.24962 0.94591 0.96153 0.95859 1.69928 1.40620 1.21440 1.20593 0.87186 0.78559 0.77476 0.87450 1.22275 1.22787 1.11368 1.20976 0.93497 0.97913 1.04834 1.20844 1.01603 0.88988 0.92762 1.20357 0.87935 0.85278 1.25252 1.43346 1.01004 1.02569 0.97104 1.94481 0.96104 1.94046 1.55649 1.94539 1.74362 1.15287 1.53074 0.91704 0.92095 0.87506 0.83382 0.85170 0.87702 0.92365 0.83724 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.29 -4.32 8.51 -41.54 -0.35 -4.67 16 3 C 0.19 3.14 6.67 -39.21 -0.26 2.87 16 4 C -0.21 -3.38 8.66 -39.44 -0.34 -3.72 16 5 C 0.03 0.45 4.88 -104.65 -0.51 -0.06 16 6 C 0.21 4.16 2.35 -70.02 -0.16 4.00 16 7 H 0.05 1.06 7.43 -51.93 -0.39 0.68 16 8 N -0.83 -14.46 5.66 -6.65 -0.04 -14.49 16 9 C -0.53 -13.29 9.29 -34.44 -0.32 -13.61 16 10 H 0.07 2.02 7.98 -52.49 -0.42 1.60 16 11 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 12 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 13 Si 0.87 19.70 26.94 -169.99 -4.58 15.12 16 14 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.19 -3.95 5.17 56.52 0.29 -3.66 16 17 C -0.15 -2.37 9.29 -39.56 -0.37 -2.73 16 18 C -0.02 -0.35 9.55 -39.61 -0.38 -0.72 16 19 C -0.10 -1.73 6.87 -79.80 -0.55 -2.28 16 20 N 0.05 0.83 4.45 34.03 0.15 0.98 16 21 O -0.20 -3.52 18.45 -29.46 -0.54 -4.06 16 22 O -0.15 -2.88 17.24 -36.49 -0.63 -3.51 16 23 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 24 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.15 2.06 6.28 -52.49 -0.33 1.73 16 27 H 0.33 5.50 7.33 -39.29 -0.29 5.21 16 28 H 0.31 4.55 9.06 -39.29 -0.36 4.19 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.15 2.04 6.65 -52.49 -0.35 1.69 16 31 H 0.15 1.97 7.61 -52.48 -0.40 1.57 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -30.57 271.53 -6.11 -36.69 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.99 Total: 7.60 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.00 Total: -12.76 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.89 Total: -38.50 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.53 Total: -12.24 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.58 Total: 15.12 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.57 -6.11 -36.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.918 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds