Wall clock time and date at job start Mon Mar 30 2020 03:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00040 * 2 1 4 4 O 1.20823 * 120.00061 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99875 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47061 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46911 * 179.97438 * 6 5 3 8 8 N 1.39873 * 125.67723 * 270.16342 * 7 6 5 9 9 C 1.30318 * 109.22845 * 180.25346 * 8 7 6 10 10 C 1.50703 * 125.97469 * 179.78492 * 9 8 7 11 11 C 1.41885 * 108.05072 * 359.77138 * 9 8 7 12 12 C 1.41596 * 126.55944 * 179.97438 * 11 9 8 13 13 H 1.07995 * 120.00175 * 123.83988 * 12 11 9 14 14 C 1.39692 * 119.99821 * 303.84257 * 12 11 9 15 15 N 1.31031 * 119.99958 * 184.19208 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 4.19369 * 14 12 11 17 17 H 1.48497 * 109.47186 * 95.97927 * 16 14 12 18 18 H 1.48499 * 109.47024 * 215.98111 * 16 14 12 19 19 H 1.48498 * 109.47272 * 335.97928 * 16 14 12 20 20 C 1.34500 * 125.67357 * 89.99937 * 7 6 5 21 21 C 1.50703 * 126.40873 * 0.02844 * 20 7 6 22 22 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46967 * 299.99716 * 1 2 3 24 24 H 1.08996 * 109.47405 * 59.99210 * 1 2 3 25 25 H 1.08997 * 109.47172 * 60.00204 * 5 3 2 26 26 H 1.08998 * 109.46983 * 300.00144 * 5 3 2 27 27 H 1.09004 * 109.46814 * 59.99828 * 6 5 3 28 28 H 1.08994 * 109.46945 * 300.00266 * 6 5 3 29 29 H 1.08996 * 109.47319 * 265.83691 * 10 9 8 30 30 H 1.09004 * 109.46754 * 25.83947 * 10 9 8 31 31 H 1.09000 * 109.47177 * 145.83902 * 10 9 8 32 32 H 0.96999 * 120.00211 * 179.97438 * 15 14 12 33 33 H 1.09005 * 109.46903 * 269.70865 * 21 20 7 34 34 H 1.08997 * 109.47545 * 149.70880 * 21 20 7 35 35 H 1.08997 * 109.47109 * 29.69912 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4632 2.8186 0.0002 8 7 6.2780 2.8575 1.1365 9 6 7.5258 2.9295 0.7675 10 6 8.7183 2.9953 1.6866 11 6 7.5653 2.9348 -0.6508 12 6 8.7238 3.0031 -1.4620 13 1 8.9123 2.2375 -2.1999 14 6 9.6230 4.0610 -1.3078 15 7 10.6513 4.1695 -2.1127 16 14 9.3595 5.3211 0.0458 17 1 10.1725 4.9507 1.2320 18 1 9.7735 6.6623 -0.4389 19 1 7.9229 5.3520 0.4206 20 6 6.2465 2.8602 -1.0923 21 6 5.7835 2.8373 -2.5263 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 3.9557 0.7809 -0.8908 26 1 3.9564 0.7805 0.8891 27 1 3.6108 3.2356 0.8907 28 1 3.6101 3.2367 -0.8892 29 1 8.9929 4.0372 1.8515 30 1 8.4682 2.5301 2.6402 31 1 9.5564 2.4662 1.2329 32 1 11.2754 4.9042 -2.0059 33 1 5.7301 1.8057 -2.8744 34 1 6.4881 3.3934 -3.1446 35 1 4.7972 3.2960 -2.5970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:43 Heat of formation + Delta-G solvation = -34.996678 kcal Electronic energy + Delta-G solvation = -18490.339759 eV Core-core repulsion = 15489.541696 eV Total energy + Delta-G solvation = -3000.798063 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88315 -41.43081 -37.76833 -36.04956 -34.77767 -33.15462 -32.14204 -29.63191 -29.09910 -27.92985 -26.07246 -24.37418 -21.87481 -21.06459 -19.87847 -19.16469 -18.58519 -17.75953 -17.69147 -16.98479 -16.42212 -15.85413 -15.43477 -15.25485 -14.59113 -14.54152 -14.21751 -14.07563 -13.86336 -13.69591 -13.42396 -13.21087 -12.99249 -12.81556 -12.62108 -12.29585 -12.19061 -12.02819 -11.83974 -11.71159 -11.66564 -11.18897 -10.67994 -9.69547 -8.82565 -8.35453 -6.21521 1.03912 1.04223 1.29128 1.40446 1.48237 1.53101 2.07577 2.08979 2.33323 3.10673 3.53933 3.65387 3.88135 4.09212 4.18343 4.24803 4.29632 4.32670 4.40658 4.54373 4.64501 4.65236 4.70392 4.73073 4.86786 4.98367 5.21634 5.27672 5.36341 5.58436 5.62203 5.92148 6.44466 6.52006 6.60992 6.96475 7.12403 7.27747 8.72592 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.041101 B = 0.005181 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.091228 B = 5403.496315 C = 5666.670943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.480 3.520 4 O -0.533 6.533 5 C -0.122 4.122 6 C 0.151 3.849 7 N -0.374 5.374 8 N -0.332 5.332 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.090 4.090 12 C -0.461 4.461 13 H 0.043 0.957 14 C 0.048 3.952 15 N -0.914 5.914 16 Si 0.939 3.061 17 H -0.239 1.239 18 H -0.300 1.300 19 H -0.271 1.271 20 C -0.001 4.001 21 C -0.063 4.063 22 H 0.132 0.868 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.275 0.725 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 -6.369 4.190 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.324 3.676 4 O -0.423 6.423 5 C -0.161 4.161 6 C 0.030 3.970 7 N -0.159 5.159 8 N -0.156 5.156 9 C -0.139 4.139 10 C -0.141 4.141 11 C -0.101 4.101 12 C -0.497 4.497 13 H 0.062 0.938 14 C -0.156 4.156 15 N -0.549 5.549 16 Si 0.767 3.233 17 H -0.164 1.164 18 H -0.228 1.228 19 H -0.196 1.196 20 C -0.126 4.126 21 C -0.121 4.121 22 H 0.150 0.850 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.848 -6.047 5.097 19.522 hybrid contribution 0.646 0.694 -0.378 1.021 sum -17.202 -5.353 4.719 18.623 Atomic orbital electron populations 1.23594 0.74368 1.05828 1.02760 1.86508 1.25344 1.32478 1.83568 1.23442 0.91540 0.81388 0.71276 1.90679 1.67781 1.37063 1.46754 1.21682 0.87648 0.98879 1.07864 1.21302 0.74267 0.95798 1.05653 1.47833 1.05592 1.59574 1.02932 1.76472 1.02160 1.27964 1.08958 1.22932 0.93236 1.02165 0.95605 1.20513 0.93392 1.02380 0.97785 1.18046 0.92668 1.08286 0.91089 1.18140 1.04113 1.08628 1.18852 0.93847 1.26131 0.93637 0.98769 0.97059 1.69764 1.14433 1.32462 1.38263 0.86157 0.79565 0.77398 0.80209 1.16356 1.22808 1.19588 1.22190 0.90874 1.08528 0.91048 1.20162 1.01113 1.02947 0.87888 0.85038 0.91817 0.91614 0.85804 0.86579 0.88836 0.87427 0.91657 0.89359 0.90513 0.91573 0.90179 0.91558 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.17 10.57 -51.40 -0.54 -7.71 16 3 C 0.48 10.91 7.96 71.24 0.57 11.48 16 4 O -0.53 -14.55 15.73 21.97 0.35 -14.21 16 5 C -0.12 -2.80 6.14 29.85 0.18 -2.62 16 6 C 0.15 4.33 5.50 86.38 0.48 4.80 16 7 N -0.37 -14.54 3.58 -331.78 -1.19 -15.73 16 8 N -0.33 -14.60 12.47 -46.35 -0.58 -15.18 16 9 C 0.03 1.20 5.54 43.69 0.24 1.44 16 10 C -0.08 -3.41 8.43 71.24 0.60 -2.81 16 11 C -0.09 -4.55 4.64 -21.30 -0.10 -4.65 16 12 C -0.46 -26.13 9.34 23.45 0.22 -25.92 16 13 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 14 C 0.05 2.71 5.51 85.16 0.47 3.18 16 15 N -0.91 -54.00 13.94 21.79 0.30 -53.70 16 16 Si 0.94 45.04 23.31 68.60 1.60 46.63 16 17 H -0.24 -10.25 5.99 99.48 0.60 -9.65 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.27 -13.54 6.19 99.48 0.62 -12.92 16 20 C 0.00 -0.06 7.06 42.40 0.30 0.24 16 21 C -0.06 -2.14 9.94 71.24 0.71 -1.43 16 22 H 0.13 0.91 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.85 8.13 -2.38 -0.02 0.83 16 24 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 25 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 26 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.09 2.69 8.10 -2.38 -0.02 2.67 16 28 H 0.11 2.77 6.98 -2.39 -0.02 2.75 16 29 H 0.07 2.69 3.82 -2.39 -0.01 2.68 16 30 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 31 H 0.08 3.23 8.08 -2.39 -0.02 3.21 16 32 H 0.27 15.07 8.30 -92.71 -0.77 14.30 16 33 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.07 2.53 7.97 -2.39 -0.02 2.51 16 35 H 0.08 2.20 7.06 -2.39 -0.02 2.18 16 Total: -1.00 -70.27 294.82 5.69 -64.58 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.89 Total: 10.03 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.86 Total: -14.72 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.46 Total: -84.60 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.20 Total: -21.92 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.60 Total: 46.63 kcal Total: -70.27 5.69 -64.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.586 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds