Wall clock time and date at job start Mon Mar 30 2020 03:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00015 * 2 1 4 4 O 1.20824 * 120.00028 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99656 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46948 * 299.99497 * 5 3 2 7 7 C 1.52997 * 109.47291 * 59.99931 * 5 3 2 8 8 N 1.46501 * 109.46661 * 180.02562 * 5 3 2 9 9 N 1.39876 * 125.67881 * 300.01825 * 8 5 3 10 10 C 1.30321 * 109.23035 * 179.97438 * 9 8 5 11 11 C 1.50701 * 125.96961 * 179.97438 * 10 9 8 12 12 C 1.41882 * 108.04639 * 0.02562 * 10 9 8 13 13 C 1.41598 * 126.55345 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00234 * 134.18959 * 13 12 10 15 15 C 1.39699 * 119.99901 * 314.19340 * 13 12 10 16 16 N 1.31029 * 119.99964 * 153.24405 * 15 13 12 17 17 Si 1.86797 * 119.99871 * 333.23963 * 15 13 12 18 18 H 1.48503 * 109.47330 * 95.48074 * 17 15 13 19 19 H 1.48507 * 109.47147 * 215.48009 * 17 15 13 20 20 H 1.48500 * 109.47425 * 335.47554 * 17 15 13 21 21 C 1.34506 * 125.67246 * 119.71642 * 8 5 3 22 22 C 1.50702 * 126.40846 * 359.97438 * 21 8 5 23 23 H 1.09002 * 109.46914 * 300.00190 * 1 2 3 24 24 H 1.09005 * 109.47117 * 59.99416 * 1 2 3 25 25 H 1.09002 * 109.47477 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46864 * 60.00293 * 7 5 3 27 27 H 1.08998 * 109.46812 * 179.97438 * 7 5 3 28 28 H 1.08994 * 109.47404 * 300.00317 * 7 5 3 29 29 H 1.08999 * 109.47425 * 83.88872 * 11 10 9 30 30 H 1.09003 * 109.46867 * 203.87916 * 11 10 9 31 31 H 1.08992 * 109.47357 * 323.87981 * 11 10 9 32 32 H 0.96995 * 119.99562 * 179.97438 * 16 15 13 33 33 H 1.08994 * 109.47357 * 89.99964 * 22 21 8 34 34 H 1.08998 * 109.46678 * 210.00221 * 22 21 8 35 35 H 1.08999 * 109.46940 * 329.99785 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5814 -1.2501 8 7 3.9817 2.6797 0.0002 9 7 3.6675 3.6238 -0.9829 10 6 4.1986 4.7700 -0.6626 11 6 4.0962 6.0461 -1.4577 12 6 4.8909 4.6059 0.5649 13 6 5.6087 5.6035 1.2682 14 1 5.4766 5.7134 2.3344 15 6 6.4876 6.4457 0.5828 16 7 6.7443 7.6434 1.0482 17 14 7.2970 5.8644 -0.9971 18 1 6.5089 6.3417 -2.1618 19 1 8.6764 6.4090 -1.0762 20 1 7.3494 4.3804 -1.0096 21 6 4.7239 3.2777 0.9492 22 6 5.2742 2.6308 2.1942 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.7229 1.0758 -2.1399 27 1 5.2014 0.6389 -1.2507 28 1 3.8038 -0.4637 -1.2503 29 1 3.1624 6.5525 -1.2135 30 1 4.9365 6.6955 -1.2123 31 1 4.1157 5.8134 -2.5224 32 1 7.3548 8.2279 0.5725 33 1 6.2625 2.2218 1.9847 34 1 5.3495 3.3749 2.9872 35 1 4.6084 1.8281 2.5111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:23 Heat of formation + Delta-G solvation = -33.416784 kcal Electronic energy + Delta-G solvation = -19133.282515 eV Core-core repulsion = 16132.552962 eV Total energy + Delta-G solvation = -3000.729554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.09643 -41.16752 -37.65498 -36.16711 -34.84664 -33.26216 -31.86064 -29.40722 -28.77630 -28.09140 -25.97272 -25.03931 -22.18231 -21.12890 -19.81458 -19.17124 -18.57037 -17.69149 -17.58480 -16.74080 -16.51049 -15.75095 -14.99592 -14.91776 -14.59917 -14.46001 -14.24977 -13.91434 -13.75552 -13.56616 -13.47338 -13.24800 -13.04487 -12.89495 -12.77724 -12.66169 -12.29655 -11.96817 -11.87283 -11.85123 -11.56222 -10.99221 -10.75224 -9.70579 -8.91362 -8.51909 -6.08602 0.92437 1.01844 1.31648 1.37272 1.50325 1.55034 1.94581 2.06401 2.32488 3.15856 3.55233 3.66106 3.79665 4.14922 4.17531 4.27589 4.27789 4.36848 4.61762 4.62514 4.67846 4.70105 4.77802 4.89532 4.96902 5.08706 5.18087 5.20967 5.30034 5.57306 5.62342 5.92479 6.40048 6.49493 6.67329 6.97284 7.11109 7.27850 8.60700 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.006693 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.981220 B = 4182.715361 C = 4271.072243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.450 3.550 4 O -0.523 6.523 5 C 0.171 3.829 6 H 0.166 0.834 7 C -0.144 4.144 8 N -0.367 5.367 9 N -0.313 5.313 10 C 0.015 3.985 11 C -0.065 4.065 12 C -0.073 4.073 13 C -0.480 4.480 14 H 0.044 0.956 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.922 3.078 18 H -0.247 1.247 19 H -0.280 1.280 20 H -0.273 1.273 21 C -0.028 4.028 22 C -0.058 4.058 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.144 0.856 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.279 0.721 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -17.421 -3.278 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.292 3.708 4 O -0.410 6.410 5 C 0.067 3.933 6 H 0.183 0.817 7 C -0.201 4.201 8 N -0.155 5.155 9 N -0.136 5.136 10 C -0.151 4.151 11 C -0.124 4.124 12 C -0.083 4.083 13 C -0.515 4.515 14 H 0.062 0.938 15 C -0.143 4.143 16 N -0.517 5.517 17 Si 0.746 3.254 18 H -0.171 1.171 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.151 4.151 22 C -0.117 4.117 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.161 0.839 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.597 -17.650 -4.106 19.285 hybrid contribution 0.482 1.029 0.257 1.165 sum -6.115 -16.622 -3.849 18.124 Atomic orbital electron populations 1.23576 0.74680 1.06024 1.02128 1.86470 1.24951 1.31307 1.83829 1.24279 0.92512 0.81840 0.72179 1.90736 1.67340 1.37911 1.45044 1.20960 0.87054 0.79207 1.06093 0.81741 1.22054 1.02601 1.01788 0.93692 1.47481 1.42903 1.07820 1.17249 1.76445 1.24333 0.98892 1.13917 1.22892 0.98602 0.94613 0.99001 1.20237 1.02721 0.91673 0.97769 1.18009 1.02655 0.92175 0.95453 1.18077 1.24726 1.13955 0.94725 0.93757 1.26053 0.95701 0.92787 0.99787 1.69929 1.32842 1.06648 1.42239 0.86285 0.78039 0.79716 0.81318 1.17140 1.20610 1.19736 1.22141 1.03660 0.92880 0.96404 1.20126 1.00628 0.99643 0.91259 0.92481 0.92621 0.83853 0.92935 0.90019 0.86177 0.91089 0.91380 0.90964 0.91138 0.89985 0.91562 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.35 -8.15 10.47 -51.43 -0.54 -8.69 16 3 C 0.45 14.17 7.29 71.24 0.52 14.69 16 4 O -0.52 -21.64 15.65 21.97 0.34 -21.30 16 5 C 0.17 5.02 3.53 44.25 0.16 5.18 16 6 H 0.17 3.56 6.64 -2.39 -0.02 3.55 16 7 C -0.14 -3.35 9.38 71.98 0.67 -2.68 16 8 N -0.37 -15.28 2.92 -314.96 -0.92 -16.20 16 9 N -0.31 -15.03 11.70 -46.36 -0.54 -15.58 16 10 C 0.01 0.76 6.25 43.69 0.27 1.03 16 11 C -0.07 -3.01 9.03 71.24 0.64 -2.36 16 12 C -0.07 -3.85 4.62 -21.30 -0.10 -3.95 16 13 C -0.48 -27.83 9.30 23.45 0.22 -27.61 16 14 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 15 C 0.06 3.63 4.45 85.17 0.38 4.01 16 16 N -0.88 -51.37 13.94 21.79 0.30 -51.07 16 17 Si 0.92 44.13 24.93 68.60 1.71 45.84 16 18 H -0.25 -11.05 5.99 99.48 0.60 -10.46 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 21 C -0.03 -1.24 7.06 42.40 0.30 -0.94 16 22 C -0.06 -1.99 9.76 71.24 0.70 -1.30 16 23 H 0.06 1.09 8.13 -2.39 -0.02 1.08 16 24 H 0.05 1.09 8.13 -2.38 -0.02 1.07 16 25 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.07 3.28 3.96 -2.39 -0.01 3.27 16 31 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.28 14.84 8.30 -92.71 -0.77 14.07 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.47 7.98 -2.39 -0.02 2.45 16 35 H 0.08 2.10 7.09 -2.39 -0.02 2.08 16 Total: -1.00 -75.58 296.29 6.29 -69.29 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.98 Total: 9.91 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.96 Total: -12.21 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.16 Total: -82.84 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.19 Total: -29.99 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.71 Total: 45.84 kcal Total: -75.58 6.29 -69.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.870 kcal (2) G-P(sol) polarization free energy of solvation -75.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds