Wall clock time and date at job start Mon Mar 30 2020 03:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46788 * 90.00093 * 6 5 4 8 8 C 1.46896 * 111.00028 * 293.94851 * 7 6 5 9 9 C 1.46901 * 110.99548 * 169.99890 * 7 6 5 10 10 C 1.50702 * 109.47101 * 189.99479 * 9 7 6 11 11 O 1.21294 * 119.99881 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00248 * 179.97438 * 10 9 7 13 13 C 1.37096 * 120.00158 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99702 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00127 * 180.02562 * 13 12 10 16 16 N 1.31410 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00226 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47048 * 59.99783 * 17 15 13 19 19 H 1.48499 * 109.47362 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47053 * 300.00336 * 17 15 13 21 21 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 22 22 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 23 23 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 24 24 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 25 25 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 26 26 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 28 28 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 29 29 H 1.09006 * 109.47347 * 60.00373 * 8 7 6 30 30 H 1.08998 * 109.47128 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47383 * 300.00888 * 8 7 6 32 32 H 1.08995 * 109.47468 * 310.00172 * 9 7 6 33 33 H 1.09005 * 109.46882 * 70.00067 * 9 7 6 34 34 H 0.97002 * 120.00108 * 0.02562 * 12 10 9 35 35 H 0.97002 * 120.00471 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1508 -1.9355 1.4038 8 6 5.6420 -0.7304 2.0850 9 6 6.1476 -3.0133 1.4567 10 6 6.3310 -3.4583 2.8848 11 8 5.6936 -2.9299 3.7713 12 7 7.2024 -4.4440 3.1769 13 6 7.3688 -4.8492 4.4760 14 1 6.8013 -4.3786 5.2653 15 6 8.2676 -5.8651 4.7773 16 7 8.9585 -6.4372 3.8170 17 14 8.4939 -6.4176 6.5472 18 1 7.1996 -6.9139 7.0802 19 1 9.5012 -7.5074 6.6008 20 1 8.9600 -5.2711 7.3679 21 8 2.2923 -1.0895 0.0044 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1203 -0.0045 26 1 4.5212 1.2433 0.0076 27 1 4.5127 -2.5646 -0.4964 28 1 5.6061 -1.1601 -0.4949 29 1 4.8587 0.0277 2.0923 30 1 5.9170 -0.9790 3.1100 31 1 6.5150 -0.3454 1.5581 32 1 5.8049 -3.8551 0.8550 33 1 7.0974 -2.6493 1.0648 34 1 7.7118 -4.8669 2.4680 35 1 9.5862 -7.1462 4.0272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066472503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:48 Heat of formation + Delta-G solvation = -13.792706 kcal Electronic energy + Delta-G solvation = -18025.335783 eV Core-core repulsion = 15025.457193 eV Total energy + Delta-G solvation = -2999.878590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.51037 -38.59392 -36.45794 -33.86221 -33.11203 -32.06597 -31.21983 -28.90363 -27.66694 -25.51303 -24.32724 -21.96192 -21.63201 -20.04553 -19.15728 -17.83852 -16.63807 -16.34679 -15.76906 -15.22161 -14.85044 -14.61675 -14.07949 -13.88173 -13.63643 -13.25777 -13.18801 -13.02367 -12.75141 -12.42003 -12.09891 -12.04650 -11.53663 -11.38635 -11.23988 -11.15106 -10.91117 -10.42530 -10.19810 -9.79260 -9.45167 -8.47723 -8.29108 -7.95721 -7.83154 -6.39980 -3.80732 1.74387 2.62369 2.95211 3.21577 3.27058 3.31706 3.92177 4.09068 4.30638 4.65452 4.92966 5.01155 5.06544 5.18798 5.26514 5.30850 5.36939 5.41855 5.58187 5.70501 5.73580 5.85150 5.95605 5.98798 6.01574 6.20388 6.29428 6.56155 6.60119 7.20280 7.26799 7.35838 7.56846 8.07989 8.63883 9.19933 9.56131 10.08342 10.77767 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.047637 B = 0.003808 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.641313 B = 7351.552751 C = 7503.380826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.214 4.214 4 C -0.208 4.208 5 C 0.012 3.988 6 C 0.129 3.871 7 N -0.516 5.516 8 C 0.019 3.981 9 C 0.046 3.954 10 C 0.444 3.556 11 O -0.576 6.576 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 O -0.166 6.166 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.392 0.608 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 11.021 -10.827 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 C -0.233 4.233 4 C -0.228 4.228 5 C -0.039 4.039 6 C 0.001 3.999 7 N -0.240 5.240 8 C -0.129 4.129 9 C -0.085 4.085 10 C 0.230 3.770 11 O -0.460 6.460 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 O -0.062 6.062 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.162 0.838 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.225 0.775 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.099 10.741 -9.959 17.792 hybrid contribution 1.322 -0.085 -0.024 1.325 sum -8.777 10.656 -9.983 17.037 Atomic orbital electron populations 1.20268 0.85396 1.04012 1.03157 1.22403 0.93982 0.84357 1.06256 1.21491 0.92750 0.99148 1.09885 1.21527 0.98068 0.93864 1.09369 1.22194 0.82941 0.94080 1.04723 1.20520 0.90533 0.97636 0.91205 1.61513 1.41767 1.08341 1.12421 1.22621 0.97542 0.91157 1.01568 1.21880 0.93873 0.94846 0.97869 1.19686 0.83975 0.83926 0.89455 1.90494 1.49318 1.57882 1.48316 1.41843 1.36603 1.32118 1.09502 1.19654 1.21787 1.16687 0.84734 0.87965 1.25250 0.96280 0.96642 0.99736 1.69602 1.26347 1.25981 1.32485 0.85919 0.78109 0.78207 0.81991 1.19884 1.20997 1.19924 1.83980 1.16374 1.34863 1.70964 0.90396 0.90515 0.89566 0.83809 0.83800 0.89097 0.91750 0.91766 0.88441 0.96605 0.89156 0.93146 0.77473 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 36.00 0.38 -0.23 16 2 C -0.02 -0.25 7.32 -35.63 -0.26 -0.51 16 3 C -0.21 -2.62 10.81 -39.71 -0.43 -3.05 16 4 C -0.21 -2.75 9.40 -39.70 -0.37 -3.12 16 5 C 0.01 0.17 6.22 -35.62 -0.22 -0.05 16 6 C 0.13 1.79 5.50 -4.97 -0.03 1.77 16 7 N -0.52 -9.11 4.49 -245.82 -1.10 -10.21 16 8 C 0.02 0.32 8.91 60.06 0.54 0.86 16 9 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 10 C 0.44 10.63 7.47 -10.99 -0.08 10.55 16 11 O -0.58 -15.82 13.91 5.55 0.08 -15.75 16 12 N -0.56 -14.38 5.29 -10.97 -0.06 -14.44 16 13 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 14 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 17 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 O -0.17 -2.56 10.65 5.72 0.06 -2.50 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.09 1.16 7.93 -51.93 -0.41 0.75 16 28 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 29 H 0.06 1.05 6.32 -51.93 -0.33 0.72 16 30 H 0.10 2.01 5.82 -51.93 -0.30 1.71 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -32.50 301.23 -6.20 -38.70 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.67 Total: 8.42 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.75 Total: -1.00 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.44 Total: -48.57 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.14 Total: -18.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.50 -6.20 -38.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.907 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds