Wall clock time and date at job start Mon Mar 30 2020 03:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46788 * 90.00093 * 6 5 4 8 8 C 1.46896 * 111.00028 * 293.94851 * 7 6 5 9 9 C 1.46901 * 110.99548 * 169.99890 * 7 6 5 10 10 C 1.50702 * 109.47101 * 189.99479 * 9 7 6 11 11 O 1.21294 * 119.99881 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00248 * 179.97438 * 10 9 7 13 13 C 1.37096 * 120.00158 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99702 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00127 * 180.02562 * 13 12 10 16 16 N 1.31410 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00226 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47048 * 59.99783 * 17 15 13 19 19 H 1.48499 * 109.47362 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47053 * 300.00336 * 17 15 13 21 21 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 22 22 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 23 23 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 24 24 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 25 25 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 26 26 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 28 28 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 29 29 H 1.09006 * 109.47347 * 60.00373 * 8 7 6 30 30 H 1.08998 * 109.47128 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47383 * 300.00888 * 8 7 6 32 32 H 1.08995 * 109.47468 * 310.00172 * 9 7 6 33 33 H 1.09005 * 109.46882 * 70.00067 * 9 7 6 34 34 H 0.97002 * 120.00108 * 0.02562 * 12 10 9 35 35 H 0.97002 * 120.00471 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1508 -1.9355 1.4038 8 6 5.6420 -0.7304 2.0850 9 6 6.1476 -3.0133 1.4567 10 6 6.3310 -3.4583 2.8848 11 8 5.6936 -2.9299 3.7713 12 7 7.2024 -4.4440 3.1769 13 6 7.3688 -4.8492 4.4760 14 1 6.8013 -4.3786 5.2653 15 6 8.2676 -5.8651 4.7773 16 7 8.9585 -6.4372 3.8170 17 14 8.4939 -6.4176 6.5472 18 1 7.1996 -6.9139 7.0802 19 1 9.5012 -7.5074 6.6008 20 1 8.9600 -5.2711 7.3679 21 8 2.2923 -1.0895 0.0044 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1203 -0.0045 26 1 4.5212 1.2433 0.0076 27 1 4.5127 -2.5646 -0.4964 28 1 5.6061 -1.1601 -0.4949 29 1 4.8587 0.0277 2.0923 30 1 5.9170 -0.9790 3.1100 31 1 6.5150 -0.3454 1.5581 32 1 5.8049 -3.8551 0.8550 33 1 7.0974 -2.6493 1.0648 34 1 7.7118 -4.8669 2.4680 35 1 9.5862 -7.1462 4.0272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066472503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:48 Heat of formation + Delta-G solvation = -37.054862 kcal Electronic energy + Delta-G solvation = -18026.344506 eV Core-core repulsion = 15025.457193 eV Total energy + Delta-G solvation = -3000.887313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.50088 -40.36428 -37.94037 -35.88224 -34.06965 -33.30660 -32.99246 -30.04261 -29.07640 -27.01880 -25.83684 -23.24954 -22.63930 -21.04363 -20.98856 -19.85987 -18.04300 -17.45870 -17.14989 -16.55946 -16.50148 -16.17129 -15.54407 -15.40174 -15.22368 -14.58635 -14.12279 -13.81537 -13.72179 -13.68587 -13.50165 -13.45741 -13.05962 -12.87455 -12.63670 -12.54989 -12.42306 -12.28412 -12.11258 -11.45531 -10.77529 -10.31823 -9.99699 -9.38561 -9.10088 -8.45771 -5.94436 0.74200 1.40058 1.41823 1.52674 1.66426 2.03323 2.06214 2.30007 2.87418 3.21053 3.41538 3.73355 4.03827 4.14680 4.20020 4.22491 4.37482 4.43624 4.52320 4.59186 4.64818 4.67031 4.72850 4.87674 4.94640 5.08982 5.15552 5.31612 5.41468 5.68146 5.83769 6.01803 6.10820 6.30487 6.61935 7.13887 7.57318 8.13803 8.71397 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.047637 B = 0.003808 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.641313 B = 7351.552751 C = 7503.380826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.030 4.030 3 C -0.224 4.224 4 C -0.207 4.207 5 C -0.019 4.019 6 C 0.133 3.867 7 N -0.542 5.542 8 C 0.028 3.972 9 C 0.059 3.941 10 C 0.440 3.560 11 O -0.617 6.617 12 N -0.573 5.573 13 C -0.334 4.334 14 H 0.078 0.922 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.992 3.008 18 H -0.273 1.273 19 H -0.270 1.270 20 H -0.272 1.272 21 O -0.193 6.193 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.169 0.831 26 H 0.160 0.840 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.397 0.603 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.447 11.627 -11.868 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.243 4.243 4 C -0.227 4.227 5 C -0.069 4.069 6 C 0.006 3.994 7 N -0.267 5.267 8 C -0.120 4.120 9 C -0.071 4.071 10 C 0.227 3.773 11 O -0.503 6.503 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.096 0.904 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.198 1.198 19 H -0.194 1.194 20 H -0.197 1.197 21 O -0.090 6.090 22 H 0.115 0.885 23 H 0.092 0.908 24 H 0.125 0.875 25 H 0.187 0.813 26 H 0.178 0.822 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.237 11.350 -11.035 18.852 hybrid contribution 1.286 -0.198 0.258 1.327 sum -8.951 11.151 -10.777 17.906 Atomic orbital electron populations 1.20466 0.82771 1.04896 1.04667 1.23256 0.95654 0.83949 1.05179 1.21874 0.92384 1.00343 1.09729 1.21848 0.99186 0.93623 1.07997 1.22412 0.82986 0.94838 1.06707 1.20583 0.91217 0.98547 0.89034 1.61399 1.41832 1.08309 1.15183 1.22427 0.98653 0.91322 0.99579 1.21750 0.95723 0.96078 0.93595 1.20769 0.82260 0.82483 0.91741 1.90472 1.50490 1.58864 1.50484 1.41901 1.37399 1.32868 1.08857 1.19617 1.23054 1.18120 0.85588 0.90445 1.26013 0.95395 0.96037 1.03708 1.69660 1.26345 1.26066 1.34041 0.85006 0.78204 0.78020 0.77207 1.19841 1.19401 1.19692 1.83961 1.17078 1.36372 1.71638 0.88481 0.90782 0.87484 0.81339 0.82227 0.88154 0.89029 0.91266 0.92537 0.94188 0.86840 0.90397 0.76910 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.23 0.74 -0.33 16 2 C -0.03 -0.73 7.32 24.83 0.18 -0.55 16 3 C -0.22 -5.07 10.81 22.19 0.24 -4.83 16 4 C -0.21 -5.09 9.40 22.19 0.21 -4.88 16 5 C -0.02 -0.54 6.22 24.84 0.15 -0.39 16 6 C 0.13 3.44 5.50 85.56 0.47 3.91 16 7 N -0.54 -18.55 4.49 -931.63 -4.18 -22.73 16 8 C 0.03 0.95 8.91 127.69 1.14 2.08 16 9 C 0.06 2.06 5.45 85.56 0.47 2.53 16 10 C 0.44 21.34 7.47 87.66 0.66 22.00 16 11 O -0.62 -35.02 13.91 -3.07 -0.04 -35.06 16 12 N -0.57 -29.67 5.29 -306.99 -1.62 -31.30 16 13 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 14 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 15 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 16 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 17 Si 0.99 43.32 29.55 68.60 2.03 45.34 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 O -0.19 -5.85 10.65 -2.45 -0.03 -5.87 16 22 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.10 2.36 7.93 -2.39 -0.02 2.34 16 28 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 29 H 0.07 2.22 6.32 -2.38 -0.02 2.20 16 30 H 0.06 2.38 5.82 -2.39 -0.01 2.37 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 3.43 7.93 -2.39 -0.02 3.42 16 33 H 0.08 2.31 8.12 -2.38 -0.02 2.29 16 34 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 35 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -71.45 301.23 2.34 -69.12 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.37 Total: 29.09 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.54 Total: 0.99 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -5.52 Total: -103.61 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.07 Total: -40.94 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.45 2.34 -69.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.061 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds