Wall clock time and date at job start Mon Mar 30 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34522 * 120.45772 * 2 1 4 4 C 1.50702 * 120.45827 * 359.96348 * 3 2 1 5 5 C 1.47776 * 119.08152 * 179.97438 * 3 2 1 6 6 O 1.21542 * 120.00402 * 180.02562 * 5 3 2 7 7 N 1.34639 * 120.00099 * 359.97438 * 5 3 2 8 8 C 1.46505 * 119.54173 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47241 * 90.01979 * 8 7 5 10 10 C 1.52994 * 109.46816 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47018 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00071 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00347 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99390 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00237 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47292 * 60.00131 * 15 13 11 17 17 H 1.48495 * 109.46987 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46929 * 299.99988 * 15 13 11 19 19 N 1.39829 * 120.91817 * 0.02562 * 7 5 3 20 20 H 0.97001 * 119.53796 * 179.97438 * 19 7 5 21 21 C 1.34633 * 120.91852 * 0.23898 * 19 7 5 22 22 O 1.21536 * 120.00406 * 179.72286 * 21 19 7 23 23 H 1.08998 * 109.47560 * 90.00007 * 1 2 3 24 24 H 1.09001 * 109.47080 * 209.99817 * 1 2 3 25 25 H 1.09002 * 109.47082 * 329.99335 * 1 2 3 26 26 H 1.08998 * 109.46877 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.46566 * 300.01965 * 4 3 2 28 28 H 1.08998 * 109.46876 * 60.01721 * 4 3 2 29 29 H 1.09003 * 109.46958 * 210.02328 * 8 7 5 30 30 H 1.08997 * 109.46800 * 330.01708 * 8 7 5 31 31 H 1.08998 * 109.46994 * 299.99894 * 9 8 7 32 32 H 1.08999 * 109.46715 * 60.00037 * 9 8 7 33 33 H 1.08998 * 109.47328 * 299.99782 * 10 9 8 34 34 H 1.08999 * 109.47374 * 60.00532 * 10 9 8 35 35 H 0.97004 * 119.99743 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1596 0.0000 4 6 1.4563 2.4766 -0.0008 5 6 3.6662 1.1241 0.0006 6 8 4.2991 2.1617 0.0011 7 7 4.3112 -0.0577 0.0016 8 6 5.7761 -0.0812 0.0028 9 6 6.2849 -0.0892 1.4456 10 6 7.8147 -0.1143 1.4467 11 6 8.3159 -0.1228 2.8679 12 1 7.6136 -0.1119 3.6883 13 6 9.6712 -0.1446 3.1209 14 7 10.5263 -0.1584 2.1218 15 14 10.2924 -0.1544 4.8825 16 1 9.7775 -1.3587 5.5823 17 1 11.7772 -0.1789 4.8835 18 1 9.8165 1.0660 5.5820 19 7 3.6025 -1.2631 0.0016 20 1 4.0875 -2.1031 0.0020 21 6 2.2562 -1.2739 -0.0042 22 8 1.6570 -2.3313 -0.0092 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 2.1778 3.2936 -0.0012 27 1 0.8309 2.5438 -0.8911 28 1 0.8305 2.5447 0.8889 29 1 6.1255 -0.9769 -0.5108 30 1 6.1540 0.8028 -0.5109 31 1 5.9355 0.8066 1.9591 32 1 5.9070 -0.9732 1.9592 33 1 8.1637 -1.0103 0.9334 34 1 8.1930 0.7695 0.9330 35 1 11.4798 -0.1734 2.2998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070820529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:34 Heat of formation + Delta-G solvation = -57.452941 kcal Electronic energy + Delta-G solvation = -18294.551134 eV Core-core repulsion = 15292.779294 eV Total energy + Delta-G solvation = -3001.771840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27997 -40.17684 -37.91405 -36.84275 -35.93890 -34.09415 -31.89940 -30.52672 -29.21442 -27.73073 -25.26206 -23.66870 -23.18331 -22.17438 -20.00920 -19.17541 -18.50161 -17.73518 -17.28108 -16.71188 -16.48032 -15.92644 -15.72206 -15.63959 -14.79060 -14.52493 -14.38041 -14.37033 -14.01305 -13.40269 -13.30778 -13.11668 -13.05770 -12.73451 -12.65685 -12.60587 -12.26355 -11.69378 -11.64028 -11.55066 -11.32223 -11.11880 -10.57211 -10.30750 -9.50675 -8.22658 -6.33406 -0.48539 0.44245 1.15595 1.39072 1.41332 1.49411 2.11089 2.16306 2.39477 3.02987 3.11031 3.51361 3.93870 4.05761 4.13156 4.15400 4.40367 4.53632 4.58618 4.71005 4.75284 4.84083 4.90165 4.95752 5.05338 5.07799 5.13740 5.34000 5.45325 5.57109 5.65400 5.79808 6.20307 6.26579 6.47483 6.81472 6.93449 7.35631 8.88578 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.004447 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.540391 B = 6295.435403 C = 6580.242425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.110 4.110 3 C -0.105 4.105 4 C -0.107 4.107 5 C 0.525 3.475 6 O -0.547 6.547 7 N -0.394 5.394 8 C 0.119 3.881 9 C -0.108 4.108 10 C 0.029 3.971 11 C -0.547 4.547 12 H 0.055 0.945 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.270 1.270 19 N -0.492 5.492 20 H 0.437 0.563 21 C 0.539 3.461 22 O -0.548 6.548 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.008 0.992 34 H -0.004 1.004 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.343 1.199 -5.935 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.110 4.110 4 C -0.163 4.163 5 C 0.316 3.684 6 O -0.423 6.423 7 N -0.219 5.219 8 C -0.002 4.002 9 C -0.147 4.147 10 C -0.009 4.009 11 C -0.585 4.585 12 H 0.073 0.927 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.196 1.196 19 N -0.243 5.243 20 H 0.282 0.718 21 C 0.329 3.671 22 O -0.425 6.425 23 H 0.119 0.881 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.225 1.342 -5.988 21.136 hybrid contribution 1.453 -0.545 0.826 1.758 sum -18.772 0.798 -5.163 19.485 Atomic orbital electron populations 1.20849 0.85393 1.05011 1.04721 1.22603 0.99619 0.89597 0.99649 1.22624 0.90229 0.98798 0.99355 1.20872 1.00036 0.90223 1.05152 1.19062 0.89666 0.81634 0.78028 1.90853 1.68800 1.30599 1.52055 1.47828 1.05653 0.97157 1.71297 1.22082 0.73763 1.05560 0.98775 1.21771 0.97295 1.00757 0.94857 1.18910 0.90330 0.95754 0.95909 1.21592 0.92201 1.51052 0.93639 0.92711 1.25901 0.97260 0.94623 1.01623 1.70063 1.02502 1.51295 1.33028 0.85553 0.77155 0.79069 0.79609 1.19162 1.20594 1.19552 1.45540 1.04647 1.00806 1.73285 0.71771 1.18870 0.80201 0.90939 0.77133 1.90868 1.65662 1.33248 1.52691 0.88139 0.90679 0.87580 0.91444 0.87284 0.87580 0.87017 0.88430 0.94040 0.92269 0.97369 0.98554 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 9.45 71.24 0.67 -0.62 16 2 C -0.11 -2.20 6.07 -18.19 -0.11 -2.31 16 3 C -0.10 -2.28 6.07 -18.19 -0.11 -2.39 16 4 C -0.11 -1.57 8.84 71.24 0.63 -0.94 16 5 C 0.53 15.85 7.71 86.79 0.67 16.52 16 6 O -0.55 -20.17 15.68 -3.85 -0.06 -20.23 16 7 N -0.39 -11.39 3.50 -466.24 -1.63 -13.02 16 8 C 0.12 3.78 5.60 86.38 0.48 4.26 16 9 C -0.11 -4.34 5.48 30.59 0.17 -4.17 16 10 C 0.03 1.46 4.97 29.85 0.15 1.61 16 11 C -0.55 -30.99 9.11 25.60 0.23 -30.75 16 12 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 13 C 0.00 0.24 5.46 84.66 0.46 0.71 16 14 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 15 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 N -0.49 -12.24 6.31 -175.83 -1.11 -13.35 16 20 H 0.44 9.39 8.79 -213.49 -1.88 7.52 16 21 C 0.54 13.58 7.99 86.79 0.69 14.28 16 22 O -0.55 -16.15 17.25 -3.83 -0.07 -16.21 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 1.09 7.75 -2.39 -0.02 1.07 16 25 H 0.11 0.78 6.64 -2.39 -0.02 0.77 16 26 H 0.07 1.28 7.28 -2.39 -0.02 1.26 16 27 H 0.11 1.00 8.13 -2.39 -0.02 0.99 16 28 H 0.11 1.07 7.49 -2.39 -0.02 1.05 16 29 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.10 3.34 7.38 -2.39 -0.02 3.32 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -71.50 302.00 2.61 -68.89 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -0.77 Total: 6.96 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 3.94 Total: -3.80 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.46 Total: -81.82 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.13 Total: -36.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.50 2.61 -68.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070820529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.437 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds