Wall clock time and date at job start Mon Mar 30 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.35019 * 120.44071 * 94.99796 * 3 2 1 5 5 N 1.36835 * 119.68596 * 179.97438 * 4 3 2 6 6 C 1.46497 * 119.69103 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47511 * 90.00087 * 6 5 4 8 8 C 1.53000 * 109.47612 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47189 * 180.02562 * 8 7 6 10 10 H 1.07995 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99756 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99971 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99966 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47326 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47259 * 119.99780 * 13 11 9 16 16 H 1.48495 * 109.47341 * 240.00063 * 13 11 9 17 17 C 1.34542 * 120.61658 * 359.97438 * 5 4 3 18 18 O 1.21590 * 119.53101 * 180.02562 * 17 5 4 19 19 N 1.34598 * 120.93341 * 0.02562 * 17 5 4 20 20 H 0.96996 * 119.86806 * 180.02562 * 19 17 5 21 21 C 1.34839 * 120.26273 * 359.77234 * 19 17 5 22 22 O 1.21773 * 120.30685 * 180.23549 * 21 19 17 23 23 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 27 27 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 28 28 H 1.08003 * 120.15926 * 359.96264 * 4 3 2 29 29 H 1.09002 * 109.47037 * 209.99907 * 6 5 4 30 30 H 1.08999 * 109.47240 * 329.99939 * 6 5 4 31 31 H 1.09002 * 109.46823 * 299.99951 * 7 6 5 32 32 H 1.08995 * 109.47442 * 59.99528 * 7 6 5 33 33 H 1.09002 * 109.46822 * 299.99750 * 8 7 6 34 34 H 1.08995 * 109.47266 * 59.99220 * 8 7 6 35 35 H 0.96996 * 119.99449 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3560 2.0320 1.1596 5 7 2.8111 3.3223 1.1416 6 6 3.1628 3.9853 2.3998 7 6 4.6398 3.7366 2.7118 8 6 5.0071 4.4285 4.0261 9 6 6.4621 4.1841 4.3331 10 1 7.0645 3.5939 3.6585 11 6 7.0239 4.7130 5.4758 12 7 6.2901 5.4313 6.2975 13 14 8.8272 4.4095 5.8567 14 1 9.4267 3.5769 4.7829 15 1 9.5424 5.7087 5.9338 16 1 8.9462 3.7010 7.1563 17 6 2.9395 3.9874 -0.0208 18 8 3.3463 5.1332 -0.0139 19 7 2.6241 3.4023 -1.1912 20 1 2.7230 3.8961 -2.0202 21 6 2.1761 2.1308 -1.2163 22 8 1.8946 1.5993 -2.2751 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2560 1.5050 2.0971 29 1 2.9865 5.0570 2.3074 30 1 2.5486 3.5842 3.2059 31 1 4.8162 2.6649 2.8042 32 1 5.2541 4.1377 1.9057 33 1 4.8306 5.5002 3.9341 34 1 4.3928 4.0271 4.8320 35 1 6.6854 5.8037 7.1011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090805783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:43 Heat of formation + Delta-G solvation = -87.059543 kcal Electronic energy + Delta-G solvation = -18255.849192 eV Core-core repulsion = 15252.793514 eV Total energy + Delta-G solvation = -3003.055678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.34226 -40.26317 -38.45157 -36.55806 -35.69034 -35.14969 -33.29781 -30.52908 -28.62539 -26.08297 -25.65191 -24.64350 -22.91701 -21.99017 -20.33369 -19.36142 -18.46836 -18.15553 -17.78421 -16.90555 -16.42309 -16.14856 -15.72648 -15.55226 -15.13918 -14.81151 -14.51060 -14.33293 -14.05156 -13.46336 -13.23570 -12.97826 -12.69560 -12.58428 -12.29028 -12.19749 -12.04191 -11.77825 -11.60864 -11.46989 -11.44530 -11.36040 -11.17059 -10.53870 -9.36397 -8.19532 -6.29037 0.02106 0.82996 0.99728 1.40430 1.42485 1.53913 2.08483 2.38714 2.42627 3.14942 3.46594 3.66400 3.98274 4.11316 4.18161 4.25753 4.51081 4.60595 4.62650 4.72591 4.87594 4.91546 5.02093 5.16426 5.16584 5.23742 5.33336 5.45273 5.50084 5.52855 5.73379 5.86006 6.11532 6.25327 6.37389 6.86205 6.87604 7.40111 8.91930 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.032104 B = 0.004346 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.963340 B = 6440.440540 C = 6746.609956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C -0.284 4.284 4 C 0.198 3.802 5 N -0.523 5.523 6 C 0.116 3.884 7 C -0.110 4.110 8 C 0.027 3.973 9 C -0.542 4.542 10 H 0.055 0.945 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.958 3.042 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.275 1.275 17 C 0.688 3.312 18 O -0.573 6.573 19 N -0.654 5.654 20 H 0.431 0.569 21 C 0.550 3.450 22 O -0.554 6.554 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.223 0.777 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.072 0.928 32 H 0.033 0.967 33 H -0.008 1.008 34 H 0.015 0.985 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 -10.649 -8.582 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.293 4.293 4 C 0.075 3.925 5 N -0.240 5.240 6 C -0.004 4.004 7 C -0.149 4.149 8 C -0.010 4.010 9 C -0.580 4.580 10 H 0.073 0.927 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.783 3.217 14 H -0.190 1.190 15 H -0.209 1.209 16 H -0.200 1.200 17 C 0.390 3.610 18 O -0.449 6.449 19 N -0.321 5.321 20 H 0.273 0.727 21 C 0.348 3.652 22 O -0.432 6.432 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.239 0.761 29 H 0.102 0.898 30 H 0.153 0.847 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.010 0.990 34 H 0.034 0.966 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.337 -10.176 -8.816 17.601 hybrid contribution 1.153 0.754 -0.318 1.413 sum -10.184 -9.422 -9.134 16.611 Atomic orbital electron populations 1.21752 0.94639 1.02411 1.01442 1.20068 0.96067 0.88150 1.03957 1.20571 1.17177 1.01682 0.89896 1.22916 0.85806 0.81831 1.01975 1.45063 1.58026 1.13459 1.07484 1.22177 0.97432 0.99229 0.81559 1.21780 0.93854 1.01246 0.98005 1.18920 0.95294 0.94576 0.92246 1.21675 0.97117 1.32459 1.06797 0.92681 1.25853 1.02404 0.94867 0.96239 1.70066 1.37824 1.35699 1.13318 0.85507 0.79902 0.77952 0.78338 1.18994 1.20851 1.20044 1.16120 0.79017 0.84657 0.81183 1.91068 1.50725 1.17403 1.85693 1.44636 1.61228 1.16162 1.10108 0.72687 1.17634 0.75969 0.80136 0.91470 1.90863 1.50898 1.67616 1.33845 0.94891 0.91004 0.91539 0.91822 0.87616 0.76067 0.89821 0.84730 0.90935 0.94785 0.98995 0.96645 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.04 -0.66 5.83 29.85 0.17 -0.49 16 3 C -0.28 -5.50 5.14 -19.78 -0.10 -5.60 16 4 C 0.20 3.27 10.00 83.17 0.83 4.10 16 5 N -0.52 -12.45 2.61 -656.82 -1.71 -14.16 16 6 C 0.12 3.11 5.34 86.38 0.46 3.57 16 7 C -0.11 -3.95 5.48 30.59 0.17 -3.79 16 8 C 0.03 1.30 4.97 29.85 0.15 1.45 16 9 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 10 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 11 C 0.00 0.25 5.46 84.66 0.46 0.72 16 12 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 13 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.69 19.94 8.38 179.18 1.50 21.44 16 18 O -0.57 -21.05 16.66 -4.00 -0.07 -21.11 16 19 N -0.65 -16.66 5.23 -448.95 -2.35 -19.01 16 20 H 0.43 9.91 8.88 -92.71 -0.82 9.09 16 21 C 0.55 14.14 7.72 85.05 0.66 14.80 16 22 O -0.55 -17.21 17.19 -4.58 -0.08 -17.29 16 23 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 27 H 0.11 0.96 8.05 -2.39 -0.02 0.94 16 28 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.08 2.58 7.37 -2.39 -0.02 2.56 16 30 H 0.13 2.59 8.03 -2.39 -0.02 2.57 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -71.61 304.40 3.62 -67.99 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.27 Total: 6.64 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.25 Total: 5.71 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.78 Total: -87.00 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.15 Total: -38.40 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.61 3.62 -67.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090805783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds