Wall clock time and date at job start Mon Mar 30 2020 03:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34868 * 117.00194 * 2 1 4 4 N 1.31537 * 119.39508 * 359.97438 * 3 2 1 5 5 C 1.33213 * 121.38949 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.96157 * 179.97438 * 5 4 3 7 7 C 1.36386 * 120.07345 * 359.97438 * 5 4 3 8 8 C 1.40702 * 118.83431 * 0.06671 * 7 5 4 9 9 O 1.22002 * 120.64972 * 179.97438 * 8 7 5 10 10 N 1.35016 * 118.69661 * 359.93485 * 8 7 5 11 11 C 1.46501 * 120.10373 * 180.30075 * 10 8 7 12 12 C 1.53008 * 109.46940 * 269.72671 * 11 10 8 13 13 C 1.52993 * 109.47170 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47080 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00433 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99710 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00411 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99714 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47324 * 59.99833 * 18 16 14 20 20 H 1.48498 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46824 * 299.99945 * 18 16 14 22 22 H 1.08996 * 109.47344 * 59.99837 * 1 2 3 23 23 H 1.08997 * 109.47416 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47089 * 299.99561 * 1 2 3 25 25 H 1.08995 * 109.47856 * 359.97438 * 6 5 4 26 26 H 1.09001 * 109.47135 * 120.00291 * 6 5 4 27 27 H 1.09010 * 109.47176 * 239.99741 * 6 5 4 28 28 H 1.07994 * 120.58614 * 180.02562 * 7 5 4 29 29 H 1.08999 * 109.46946 * 29.71579 * 11 10 8 30 30 H 1.08996 * 109.47659 * 149.72803 * 11 10 8 31 31 H 1.09004 * 109.46849 * 299.99395 * 12 11 10 32 32 H 1.09001 * 109.47275 * 59.99471 * 12 11 10 33 33 H 1.09003 * 109.47276 * 299.99619 * 13 12 11 34 34 H 1.09001 * 109.47423 * 59.99598 * 13 12 11 35 35 H 0.96995 * 120.00257 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 7 1.3363 2.2972 -0.0005 5 6 1.8994 3.5045 -0.0010 6 6 1.0344 4.7385 -0.0022 7 6 3.2580 3.6249 -0.0005 8 6 4.0427 2.4571 -0.0009 9 8 5.2608 2.5262 -0.0009 10 7 3.4213 1.2584 -0.0004 11 6 4.2083 0.0227 0.0059 12 6 4.4823 -0.4148 -1.4344 13 6 5.3047 -1.7048 -1.4279 14 6 5.5740 -2.1360 -2.8466 15 1 5.1961 -1.5490 -3.6704 16 6 6.3031 -3.2802 -3.0927 17 7 6.7638 -3.9949 -2.0895 18 14 6.6375 -3.8143 -4.8512 19 1 7.3932 -2.7486 -5.5571 20 1 7.4356 -5.0666 -4.8449 21 1 5.3488 -4.0528 -5.5496 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.0156 4.4462 -0.0029 26 1 1.2462 5.3315 0.8875 27 1 1.2470 5.3304 -0.8925 28 1 3.7232 4.5995 -0.0005 29 1 5.1542 0.1971 0.5187 30 1 3.6529 -0.7592 0.5237 31 1 3.5364 -0.5891 -1.9473 32 1 5.0377 0.3672 -1.9523 33 1 6.2506 -1.5302 -0.9151 34 1 4.7497 -2.4870 -0.9099 35 1 7.2763 -4.8000 -2.2627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092836226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:32 Heat of formation + Delta-G solvation = -40.793686 kcal Electronic energy + Delta-G solvation = -18460.182703 eV Core-core repulsion = 15459.133263 eV Total energy + Delta-G solvation = -3001.049440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79183 -38.96332 -37.21430 -35.88306 -33.68963 -31.79349 -30.95685 -28.91183 -27.88902 -26.57319 -23.87599 -23.35134 -22.00182 -20.42459 -18.61679 -18.37163 -17.03447 -16.72636 -15.96421 -15.15066 -14.99956 -14.91700 -14.47531 -14.12373 -13.98558 -13.76793 -12.95577 -12.76041 -12.62828 -12.38294 -12.15129 -12.07814 -11.49995 -11.11038 -11.01338 -10.83978 -10.66957 -10.23895 -10.11069 -9.80555 -9.78751 -9.35988 -9.09194 -8.35702 -8.21622 -6.00813 -4.03275 0.78572 1.86149 1.94856 3.30889 3.33897 3.37941 3.41165 3.68356 3.89365 4.45921 4.60102 4.96577 5.05655 5.08895 5.23867 5.35158 5.35984 5.38155 5.50701 5.63009 5.64654 5.70142 5.74697 5.97309 6.05331 6.41567 6.60718 6.78189 6.97000 7.01507 7.62293 7.74597 7.77967 7.97043 8.02856 8.39564 9.02128 9.60569 11.10589 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.004950 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.266791 B = 5654.696778 C = 6080.423127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.300 6.300 3 C 0.580 3.420 4 N -0.599 5.599 5 C 0.209 3.791 6 C -0.104 4.104 7 C -0.336 4.336 8 C 0.535 3.465 9 O -0.528 6.528 10 N -0.506 5.506 11 C 0.086 3.914 12 C -0.118 4.118 13 C 0.027 3.973 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.072 0.928 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.152 0.848 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 12.556 6.303 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.199 6.199 3 C 0.281 3.719 4 N -0.342 5.342 5 C 0.087 3.913 6 C -0.161 4.161 7 C -0.361 4.361 8 C 0.336 3.664 9 O -0.405 6.405 10 N -0.232 5.232 11 C -0.035 4.035 12 C -0.157 4.157 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.090 0.910 23 H 0.125 0.875 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.170 0.830 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.319 12.161 6.352 20.564 hybrid contribution 0.882 -0.307 -0.981 1.355 sum -14.436 11.854 5.371 19.436 Atomic orbital electron populations 1.23447 0.73158 1.04022 1.03523 1.86417 1.25211 1.22581 1.85732 1.20494 0.80926 0.86476 0.83999 1.68172 1.35648 0.96969 1.33437 1.20774 0.92061 0.91774 0.86660 1.20754 0.99468 0.92638 1.03288 1.22379 0.93831 0.99290 1.20606 1.17078 0.88887 0.81986 0.78465 1.90974 1.12745 1.85090 1.51685 1.46844 1.04368 1.12194 1.59820 1.22427 0.96574 0.82302 1.02163 1.21967 1.00987 1.01072 0.91645 1.19018 0.94605 0.89843 0.97583 1.21137 1.33846 1.08695 0.92232 0.92777 1.25002 0.95688 0.96519 0.97104 1.69943 1.36574 1.16272 1.30616 0.86636 0.78325 0.77926 0.84994 1.20200 1.21215 1.20250 0.90959 0.87479 0.91127 0.90277 0.89846 0.89790 0.83013 0.88178 0.88742 0.92857 0.92520 0.96115 0.96213 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.47 101.05 1.06 1.51 16 2 O -0.30 -4.00 9.38 -16.33 -0.15 -4.15 16 3 C 0.58 8.60 8.26 -88.79 -0.73 7.86 16 4 N -0.60 -7.90 9.13 -10.78 -0.10 -8.00 16 5 C 0.21 2.57 6.77 -82.66 -0.56 2.01 16 6 C -0.10 -0.81 10.16 36.01 0.37 -0.44 16 7 C -0.34 -4.82 9.72 -39.32 -0.38 -5.20 16 8 C 0.53 9.71 7.44 -15.22 -0.11 9.59 16 9 O -0.53 -11.44 16.78 4.92 0.08 -11.36 16 10 N -0.51 -8.68 2.60 -121.28 -0.32 -9.00 16 11 C 0.09 1.58 5.15 -4.04 -0.02 1.56 16 12 C -0.12 -2.58 5.48 -26.73 -0.15 -2.72 16 13 C 0.03 0.71 4.97 -27.89 -0.14 0.57 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 23 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.52 8.11 -51.92 -0.42 0.10 16 25 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.10 1.93 7.45 -51.93 -0.39 1.54 16 30 H 0.09 1.58 7.38 -51.93 -0.38 1.20 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -34.00 305.27 -6.21 -40.20 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.96 Total: -3.90 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.08 Total: 0.99 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.32 Total: -43.32 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.07 Total: -15.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.00 -6.21 -40.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092836226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.591 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds