Wall clock time and date at job start Mon Mar 30 2020 03:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31844 * 119.65532 * 2 1 4 4 C 1.31846 * 121.78099 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.88733 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.39166 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47117 * 0.02562 * 6 5 4 8 8 C 1.38542 * 119.21834 * 0.02755 * 5 4 3 9 9 C 1.50697 * 120.81113 * 179.97438 * 8 5 4 10 10 N 1.46893 * 109.47086 * 269.97390 * 9 8 5 11 11 C 1.46904 * 111.00084 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46973 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00483 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99853 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99802 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00384 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46944 * 59.99501 * 16 14 12 18 18 H 1.48494 * 109.47511 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46834 * 299.99981 * 16 14 12 20 20 C 1.38706 * 119.66002 * 180.02562 * 2 1 3 21 21 O 1.35909 * 120.47203 * 0.02791 * 20 2 1 22 22 H 1.09002 * 109.47429 * 90.00459 * 1 2 3 23 23 H 1.08998 * 109.46706 * 210.00349 * 1 2 3 24 24 H 1.09007 * 109.47306 * 329.99940 * 1 2 3 25 25 H 1.08000 * 119.56023 * 179.97438 * 4 3 2 26 26 H 1.09005 * 109.46932 * 119.99778 * 6 5 4 27 27 H 1.08996 * 109.47194 * 240.00056 * 6 5 4 28 28 H 0.96700 * 113.99854 * 179.97438 * 7 6 5 29 29 H 1.09005 * 109.47220 * 29.97664 * 9 8 5 30 30 H 1.09006 * 109.46822 * 149.97035 * 9 8 5 31 31 H 1.00897 * 111.00455 * 56.04693 * 10 9 8 32 32 H 1.08999 * 109.46579 * 299.99794 * 11 10 9 33 33 H 1.08998 * 109.47066 * 59.99708 * 11 10 9 34 34 H 0.97002 * 119.99962 * 180.02562 * 15 14 12 35 35 H 0.96697 * 114.00661 * 89.99930 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1457 0.0000 4 6 3.4769 1.1947 -0.0005 5 6 4.2302 0.0353 -0.0005 6 6 5.7355 0.1042 -0.0005 7 8 6.1498 1.4719 0.0001 8 6 3.5847 -1.1906 -0.0006 9 6 4.3703 -2.4766 -0.0012 10 7 4.6245 -2.8944 -1.3863 11 6 5.3895 -4.1479 -1.4261 12 6 5.6310 -4.5437 -2.8600 13 1 5.2536 -3.9261 -3.6616 14 6 6.3329 -5.6948 -3.1486 15 7 6.7921 -6.4472 -2.1724 16 14 6.6316 -6.1859 -4.9259 17 1 7.3990 -5.1161 -5.6127 18 1 7.4050 -7.4529 -4.9662 19 1 5.3287 -6.3787 -5.6119 20 6 2.1934 -1.2053 -0.0005 21 8 1.5166 -2.3839 -0.0016 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 3.9745 2.1532 -0.0009 26 1 6.1220 -0.3925 0.8895 27 1 6.1220 -0.3924 -0.8905 28 1 7.1092 1.5922 0.0005 29 1 5.3196 -2.3227 0.5120 30 1 3.8006 -3.2506 0.5132 31 1 5.0951 -2.1667 -1.9030 32 1 6.3458 -4.0060 -0.9228 33 1 4.8265 -4.9333 -0.9218 34 1 7.2862 -7.2568 -2.3754 35 1 1.3210 -2.7244 -0.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130553234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:53 Heat of formation + Delta-G solvation = -66.670835 kcal Electronic energy + Delta-G solvation = -18333.837537 eV Core-core repulsion = 15331.665979 eV Total energy + Delta-G solvation = -3002.171557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65635 -37.44596 -36.69095 -35.73526 -33.41152 -32.19048 -30.96735 -28.72219 -27.28059 -25.13568 -24.68110 -22.22642 -21.58656 -20.47499 -18.02376 -17.95281 -16.69023 -16.23552 -15.78545 -15.32794 -14.96603 -14.69221 -14.32986 -14.14089 -13.63792 -13.40965 -13.22937 -12.51432 -12.32414 -12.24145 -12.03127 -11.97362 -11.38769 -11.30961 -10.99684 -10.82481 -10.75664 -10.50187 -10.08010 -9.39365 -9.23959 -9.07307 -8.56563 -8.47357 -7.49996 -6.11701 -4.14666 1.09715 1.28276 3.27995 3.32492 3.35199 3.66268 3.94599 4.31375 4.35909 4.51717 4.71392 4.87368 5.02424 5.24239 5.26561 5.37513 5.40975 5.46605 5.55164 5.60005 5.67545 5.84364 6.03062 6.11837 6.23598 6.42481 6.68728 7.09095 7.27022 7.44233 7.65787 7.74004 8.00290 8.08184 8.20657 8.44080 8.93583 9.50736 10.99159 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.005313 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.600140 B = 5268.392928 C = 5986.151628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.096 3.904 3 N -0.477 5.477 4 C 0.112 3.888 5 C -0.133 4.133 6 C 0.123 3.877 7 O -0.571 6.571 8 C -0.047 4.047 9 C 0.093 3.907 10 N -0.680 5.680 11 C 0.195 3.805 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.078 3.922 21 O -0.485 6.485 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.164 0.836 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.385 0.615 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.327 0.673 32 H -0.013 1.013 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 12.611 4.894 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.042 4.042 3 N -0.187 5.187 4 C -0.045 4.045 5 C -0.136 4.136 6 C 0.045 3.955 7 O -0.377 6.377 8 C -0.056 4.056 9 C -0.037 4.037 10 N -0.311 5.311 11 C 0.069 3.931 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.728 3.272 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 C 0.030 3.970 21 O -0.295 6.295 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.181 0.819 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.233 0.767 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.005 0.995 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.260 12.986 5.474 15.853 hybrid contribution 2.283 -1.115 -1.158 2.792 sum -4.976 11.871 4.316 13.576 Atomic orbital electron populations 1.20607 0.88641 1.03511 1.02892 1.21684 0.97440 0.87828 0.97278 1.67564 1.09931 1.28196 1.13042 1.22502 0.88488 0.98499 0.95055 1.20510 0.95975 0.93489 1.03589 1.20798 0.90662 0.83067 1.00993 1.86360 1.28207 1.25297 1.97830 1.20575 0.93667 0.95314 0.96043 1.20830 0.96874 0.92412 0.93542 1.60760 1.54166 1.07563 1.08630 1.19590 0.90462 0.85541 0.97514 1.21101 1.34464 1.08146 0.91946 0.92017 1.24982 0.95559 0.96263 0.97607 1.69949 1.37206 1.14854 1.31552 0.86523 0.78355 0.77730 0.84576 1.20255 1.21265 1.20105 1.18925 0.89519 0.86380 1.02135 1.84693 1.75524 1.35163 1.34108 0.90683 0.90190 0.90723 0.81872 0.91945 0.91561 0.76722 0.94936 0.89573 0.85616 0.99478 0.95085 0.92735 0.74556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.96 36.01 0.36 -0.75 16 2 C 0.10 1.40 6.80 -82.41 -0.56 0.84 16 3 N -0.48 -7.35 10.27 -9.35 -0.10 -7.44 16 4 C 0.11 1.65 10.54 -17.54 -0.18 1.46 16 5 C -0.13 -1.96 5.89 -104.50 -0.62 -2.58 16 6 C 0.12 1.54 6.24 36.00 0.22 1.76 16 7 O -0.57 -6.22 12.17 -35.23 -0.43 -6.65 16 8 C -0.05 -0.75 5.44 -104.18 -0.57 -1.32 16 9 C 0.09 1.62 5.27 -4.98 -0.03 1.59 16 10 N -0.68 -13.84 6.48 -116.34 -0.75 -14.60 16 11 C 0.20 4.90 5.44 -4.98 -0.03 4.88 16 12 C -0.52 -14.21 9.32 -34.44 -0.32 -14.53 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.08 1.20 6.68 -39.07 -0.26 0.94 16 21 O -0.49 -6.98 11.74 -19.45 -0.23 -7.21 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16 24 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.16 2.20 7.01 -52.49 -0.37 1.83 16 26 H 0.06 0.73 7.58 -51.93 -0.39 0.34 16 27 H 0.07 0.85 7.71 -51.93 -0.40 0.45 16 28 H 0.39 2.40 9.12 45.56 0.42 2.81 16 29 H 0.03 0.55 6.79 -51.93 -0.35 0.20 16 30 H 0.09 1.59 7.63 -51.93 -0.40 1.19 16 31 H 0.33 6.45 8.29 -39.29 -0.33 6.13 16 32 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.40 4.62 9.06 45.56 0.41 5.03 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -31.75 301.23 -6.36 -38.12 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.03 Total: 8.67 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.08 Total: -6.20 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.11 Total: -47.45 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.66 Total: -13.85 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.75 -6.36 -38.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130553234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.555 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds