Wall clock time and date at job start Mon Mar 30 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47104 * 2 1 4 4 O 1.33497 * 126.82591 * 270.17210 * 3 2 1 5 5 N 1.20661 * 113.15129 * 180.30863 * 4 3 2 6 6 C 1.30011 * 112.30336 * 359.71132 * 5 4 3 7 7 C 1.50697 * 127.33163 * 180.02562 * 6 5 4 8 8 C 1.37358 * 126.83301 * 89.99409 * 3 2 1 9 9 C 1.47406 * 128.56299 * 0.02562 * 8 3 2 10 10 O 1.21602 * 119.99821 * 269.70130 * 9 8 3 11 11 N 1.34775 * 119.99692 * 89.69669 * 9 8 3 12 12 C 1.46506 * 119.99693 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46660 * 35.00912 * 12 11 9 14 14 C 1.52997 * 109.47289 * 275.00198 * 12 11 9 15 15 C 1.50708 * 109.46796 * 155.00272 * 12 11 9 16 16 H 1.07995 * 119.99755 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99729 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99909 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48498 * 109.46866 * 210.00208 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 H 1.09003 * 109.46828 * 300.00052 * 1 2 3 24 24 H 1.08996 * 109.46813 * 60.00169 * 1 2 3 25 25 H 1.09001 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47350 * 239.99825 * 2 1 3 27 27 H 1.09006 * 109.46971 * 119.99286 * 2 1 3 28 28 H 1.09001 * 109.47526 * 269.95941 * 7 6 5 29 29 H 1.08998 * 109.47677 * 29.95754 * 7 6 5 30 30 H 1.09005 * 109.47061 * 149.96419 * 7 6 5 31 31 H 0.97000 * 120.00190 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 33 33 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 34 34 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 35 35 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2961 2.1763 -1.0686 5 7 2.6933 3.2794 -0.7834 6 6 2.7609 3.4624 0.5020 7 6 3.2088 4.7060 1.2257 8 6 2.3067 2.1972 1.0994 9 6 2.1832 1.8467 2.5258 10 8 1.1410 2.0578 3.1157 11 7 3.2253 1.2922 3.1761 12 6 3.1027 0.9443 4.5940 13 1 2.0871 0.6056 4.7984 14 6 3.4123 2.1743 5.4496 15 6 4.0760 -0.1571 4.9269 16 1 4.7216 -0.5575 4.1593 17 6 4.1423 -0.6535 6.2115 18 7 3.3557 -0.1662 7.1461 19 14 5.3482 -2.0192 6.6241 20 1 6.6403 -1.4257 7.0524 21 1 4.7967 -2.8509 7.7237 22 1 5.5661 -2.8663 5.4241 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.2838 4.6581 1.3995 29 1 2.9774 5.5822 0.6201 30 1 2.6892 4.7773 2.1813 31 1 4.0567 1.1241 2.7056 32 1 3.3206 1.9156 6.5044 33 1 2.7083 2.9709 5.2087 34 1 4.4280 2.5129 5.2450 35 1 3.4026 -0.5152 8.0500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134188137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:02 Heat of formation + Delta-G solvation = -15.447381 kcal Electronic energy + Delta-G solvation = -18732.979279 eV Core-core repulsion = 15733.028937 eV Total energy + Delta-G solvation = -2999.950342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.92963 -40.55212 -36.79350 -35.80399 -35.57049 -34.31146 -31.66783 -30.62625 -29.72664 -27.35551 -26.01481 -24.66128 -22.96870 -21.50624 -20.85499 -19.46331 -18.79135 -18.04156 -17.31058 -17.16471 -16.24966 -16.07080 -15.38937 -15.09037 -14.63589 -14.42162 -14.33986 -14.22834 -13.88436 -13.69689 -13.48529 -13.05525 -12.89669 -12.75130 -12.55406 -12.51031 -12.30149 -12.15596 -11.86089 -11.19631 -11.10067 -10.93445 -10.61234 -10.45518 -9.88053 -8.17927 -6.35485 0.25980 0.82532 1.43066 1.46985 1.47149 1.57478 1.78978 2.34948 2.55570 3.11748 3.13253 3.21848 3.81930 3.91571 4.12318 4.21599 4.29325 4.47359 4.55583 4.65761 4.74723 4.78946 4.90842 4.93457 5.02307 5.06238 5.07494 5.27396 5.39248 5.54691 5.65299 5.85430 6.07164 6.69783 6.81335 7.13917 7.25357 7.41434 8.88476 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.005932 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.334015 B = 4719.296183 C = 5148.053869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.034 3.966 4 O 0.098 5.902 5 N -0.371 5.371 6 C 0.051 3.949 7 C -0.078 4.078 8 C -0.270 4.270 9 C 0.593 3.407 10 O -0.583 6.583 11 N -0.687 5.687 12 C 0.272 3.728 13 H 0.005 0.995 14 C -0.136 4.136 15 C -0.548 4.548 16 H 0.074 0.926 17 C 0.018 3.982 18 N -0.916 5.916 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.130 0.870 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.404 0.596 32 H 0.069 0.931 33 H 0.014 0.986 34 H 0.042 0.958 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 1.646 -14.067 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.030 4.030 4 O 0.038 5.962 5 N -0.079 5.079 6 C -0.111 4.111 7 C -0.135 4.135 8 C -0.277 4.277 9 C 0.377 3.623 10 O -0.464 6.464 11 N -0.335 5.335 12 C 0.169 3.831 13 H 0.023 0.977 14 C -0.195 4.195 15 C -0.586 4.586 16 H 0.092 0.908 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.187 1.187 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.148 0.852 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.239 0.761 32 H 0.088 0.912 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.189 2.506 -14.498 14.714 hybrid contribution 0.543 -0.753 1.291 1.590 sum 0.731 1.753 -13.207 13.343 Atomic orbital electron populations 1.21774 0.92538 1.04152 1.02048 1.20458 0.97447 0.84161 1.06486 1.25107 0.96787 0.96805 0.84282 1.84476 1.61481 1.17448 1.32810 1.73549 1.18521 0.99356 1.16489 1.25112 0.99768 0.97189 0.89015 1.20333 1.03088 0.90822 0.99269 1.22001 1.14305 0.96699 0.94697 1.17170 0.83485 0.77208 0.84410 1.90753 1.30442 1.56138 1.69091 1.46289 1.14760 1.59659 1.12749 1.18455 0.96100 0.92996 0.75559 0.97686 1.21923 0.98201 0.96483 1.02863 1.21505 1.21598 1.19385 0.96079 0.90798 1.25755 0.97449 0.99165 0.95891 1.70044 1.39277 1.43195 1.02904 0.85358 0.78523 0.78541 0.78016 1.19787 1.21210 1.18726 0.94739 0.90900 0.88753 0.85179 0.88999 0.87974 0.88238 0.90742 0.76069 0.91221 0.96710 0.93920 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.05 -1.02 6.38 29.85 0.19 -0.83 16 3 C 0.03 0.94 6.80 25.48 0.17 1.12 16 4 O 0.10 2.68 11.06 76.95 0.85 3.54 16 5 N -0.37 -11.00 12.01 -44.79 -0.54 -11.54 16 6 C 0.05 1.55 7.59 45.15 0.34 1.89 16 7 C -0.08 -1.89 10.49 71.23 0.75 -1.15 16 8 C -0.27 -9.04 6.24 -18.74 -0.12 -9.16 16 9 C 0.59 24.45 7.57 86.66 0.66 25.10 16 10 O -0.58 -29.14 16.77 -4.04 -0.07 -29.21 16 11 N -0.69 -28.46 5.07 -449.38 -2.28 -30.74 16 12 C 0.27 13.73 2.56 44.25 0.11 13.84 16 13 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 14 C -0.14 -6.72 9.26 71.98 0.67 -6.06 16 15 C -0.55 -28.11 8.73 25.60 0.22 -27.88 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 17 C 0.02 0.93 5.30 84.65 0.45 1.38 16 18 N -0.92 -51.24 11.32 21.45 0.24 -50.99 16 19 Si 0.97 40.78 29.54 68.60 2.03 42.81 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.09 2.22 8.11 -2.38 -0.02 2.20 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.40 14.51 8.52 -92.71 -0.79 13.72 16 32 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -65.53 307.52 4.71 -60.83 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.31 Total: 19.43 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 4.16 Total: -4.12 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -2.57 Total: -93.26 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: 0.78 Total: -25.67 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.53 4.71 -60.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134188137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.378 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds