Wall clock time and date at job start Mon Mar 30 2020 03:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35253 * 116.99876 * 2 1 4 4 C 1.39468 * 126.44418 * 266.36461 * 3 2 1 5 5 C 1.41769 * 126.56277 * 0.02870 * 4 3 2 6 6 O 1.21397 * 120.00058 * 94.97570 * 5 4 3 7 7 C 1.50701 * 120.00074 * 274.97772 * 5 4 3 8 8 H 1.09006 * 109.46806 * 33.44691 * 7 5 4 9 9 C 1.52995 * 109.47156 * 273.45304 * 7 5 4 10 10 C 1.50696 * 109.47140 * 153.44762 * 7 5 4 11 11 H 1.08000 * 120.00129 * 34.89804 * 10 7 5 12 12 C 1.37875 * 119.99955 * 214.88576 * 10 7 5 13 13 N 1.31521 * 119.99923 * 179.47996 * 12 10 7 14 14 Si 1.86799 * 120.00172 * 359.49085 * 12 10 7 15 15 H 1.48493 * 109.47535 * 87.96407 * 14 12 10 16 16 H 1.48498 * 109.46983 * 207.96792 * 14 12 10 17 17 H 1.48500 * 109.46990 * 327.96034 * 14 12 10 18 18 C 1.41756 * 106.87426 * 179.75974 * 4 3 2 19 19 C 1.50701 * 125.94496 * 180.20647 * 18 4 3 20 20 N 1.30213 * 108.10883 * 0.24391 * 18 4 3 21 21 N 1.34584 * 126.43551 * 86.54976 * 3 2 1 22 22 C 1.46495 * 125.69825 * 359.97438 * 21 3 2 23 23 H 1.08998 * 109.47090 * 184.77737 * 1 2 3 24 24 H 1.09001 * 109.46837 * 304.77952 * 1 2 3 25 25 H 1.09002 * 109.46898 * 64.77758 * 1 2 3 26 26 H 1.09006 * 109.47482 * 64.17817 * 9 7 5 27 27 H 1.09006 * 109.47015 * 304.18534 * 9 7 5 28 28 H 1.08999 * 109.47462 * 184.18242 * 9 7 5 29 29 H 0.97002 * 119.99826 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.47221 * 94.52249 * 19 18 4 31 31 H 1.09000 * 109.47058 * 214.51993 * 19 18 4 32 32 H 1.09000 * 109.47464 * 334.52172 * 19 18 4 33 33 H 1.08998 * 109.46925 * 275.16637 * 22 21 3 34 34 H 1.09004 * 109.46554 * 35.15647 * 22 21 3 35 35 H 1.08993 * 109.47694 * 155.15744 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 6 2.4825 1.9110 -1.1197 5 6 2.3705 1.5031 -2.4728 6 8 1.4325 1.8803 -3.1448 7 6 3.4159 0.6012 -3.0769 8 1 3.7914 -0.0813 -2.3144 9 6 4.5702 1.4482 -3.6161 10 6 2.8051 -0.1913 -4.2037 11 1 2.0462 0.2556 -4.8289 12 6 3.2152 -1.4869 -4.4368 13 7 2.6748 -2.1820 -5.4138 14 14 4.5381 -2.2549 -3.3647 15 1 3.9084 -2.8855 -2.1769 16 1 5.2693 -3.2864 -4.1436 17 1 5.4884 -1.2034 -2.9216 18 6 3.0570 3.1174 -0.6462 19 6 3.6634 4.2025 -1.4981 20 7 2.9703 3.1243 0.6530 21 7 2.3478 1.9469 1.0808 22 6 2.0686 1.5848 2.4725 23 1 -0.3633 -1.0241 0.0856 24 1 -0.3633 0.5862 0.8441 25 1 -0.3633 0.4379 -0.9297 26 1 5.0592 1.9643 -2.7898 27 1 4.1832 2.1812 -4.3241 28 1 5.2906 0.8028 -4.1187 29 1 2.9631 -3.0936 -5.5775 30 1 2.9133 4.9670 -1.7009 31 1 4.5055 4.6506 -0.9707 32 1 4.0099 3.7749 -2.4390 33 1 1.0507 1.8799 2.7275 34 1 2.1761 0.5071 2.5961 35 1 2.7709 2.0977 3.1295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135125860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:06 Heat of formation + Delta-G solvation = -20.996785 kcal Electronic energy + Delta-G solvation = -19262.690646 eV Core-core repulsion = 16262.499664 eV Total energy + Delta-G solvation = -3000.190982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.69699 -40.03601 -39.31263 -35.63856 -34.98763 -33.33691 -31.41968 -30.36992 -28.46228 -27.25156 -27.00943 -24.79335 -22.63796 -21.44004 -20.22813 -19.13057 -18.52879 -17.65394 -17.14506 -16.87447 -16.69637 -15.81208 -15.56065 -15.18599 -14.87709 -14.55556 -14.40353 -14.28772 -13.96034 -13.69895 -13.47290 -13.16834 -13.05376 -12.99693 -12.71762 -12.59611 -12.32049 -12.09096 -11.76923 -11.31500 -11.17574 -10.78602 -10.38237 -10.24982 -9.56920 -8.28399 -6.34226 0.26236 1.03887 1.13632 1.31931 1.35638 1.36944 1.48265 2.35044 2.46006 3.05426 3.28188 3.75072 3.89566 4.07039 4.23504 4.28002 4.32223 4.37476 4.45977 4.55952 4.61343 4.64890 4.74114 4.79968 4.82660 4.90948 5.01359 5.10213 5.21005 5.47161 5.54403 5.59167 6.24542 6.26899 6.45143 6.74018 6.81353 7.29985 8.88764 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.008568 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.297247 B = 3267.354571 C = 3727.994193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.283 3.717 4 C -0.339 4.339 5 C 0.461 3.539 6 O -0.492 6.492 7 C -0.032 4.032 8 H 0.054 0.946 9 C -0.125 4.125 10 C -0.512 4.512 11 H 0.031 0.969 12 C 0.016 3.984 13 N -0.947 5.947 14 Si 0.936 3.064 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.235 1.235 18 C 0.119 3.881 19 C -0.082 4.082 20 N -0.285 5.285 21 N -0.363 5.363 22 C 0.084 3.916 23 H 0.130 0.870 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.267 0.733 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 8.050 18.372 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.110 3.890 4 C -0.353 4.353 5 C 0.338 3.662 6 O -0.367 6.367 7 C -0.051 4.051 8 H 0.072 0.928 9 C -0.183 4.183 10 C -0.550 4.550 11 H 0.049 0.951 12 C -0.181 4.181 13 N -0.587 5.587 14 Si 0.759 3.241 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.158 1.158 18 C -0.047 4.047 19 C -0.140 4.140 20 N -0.111 5.111 21 N -0.152 5.152 22 C -0.055 4.055 23 H 0.148 0.852 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.157 8.421 19.117 20.922 hybrid contribution -0.307 -1.318 -0.822 1.584 sum 0.850 7.103 18.295 19.644 Atomic orbital electron populations 1.23427 0.75292 1.06145 1.01642 1.85978 1.23073 1.20837 1.93109 1.19323 0.97487 0.85471 0.86679 1.19955 1.19633 1.00625 0.95097 1.20801 0.84252 0.75844 0.85319 1.90410 1.32201 1.49268 1.64867 1.19637 0.94320 0.95180 0.95994 0.92820 1.21792 0.96849 0.99240 1.00399 1.20973 1.22078 0.98060 1.13921 0.95099 1.25908 0.98621 0.97111 0.96471 1.70057 1.44772 1.11013 1.32836 0.85892 0.80151 0.79102 0.78954 1.19341 1.20679 1.15803 1.22545 0.96588 0.94133 0.91388 1.20495 1.01718 0.94195 0.97567 1.76919 1.20530 1.01435 1.12225 1.49060 1.45228 1.13368 1.07537 1.22379 1.04412 1.03445 0.75215 0.85181 0.90256 0.94630 0.91373 0.93338 0.92644 0.92356 0.88856 0.87533 0.90413 0.88505 0.87974 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.13 113.37 1.26 2.02 16 2 O -0.32 -10.95 10.44 -85.37 -0.89 -11.84 16 3 C 0.28 9.90 7.03 84.57 0.59 10.49 16 4 C -0.34 -13.41 5.57 -21.24 -0.12 -13.52 16 5 C 0.46 21.84 5.42 26.56 0.14 21.98 16 6 O -0.49 -26.58 16.70 -3.39 -0.06 -26.63 16 7 C -0.03 -1.56 2.10 -12.29 -0.03 -1.59 16 8 H 0.05 2.61 5.47 -2.38 -0.01 2.60 16 9 C -0.13 -5.19 8.38 71.98 0.60 -4.58 16 10 C -0.51 -31.06 8.57 25.60 0.22 -30.84 16 11 H 0.03 2.15 7.51 -2.91 -0.02 2.13 16 12 C 0.02 0.96 5.47 84.65 0.46 1.42 16 13 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 14 Si 0.94 44.48 26.64 68.60 1.83 46.31 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.24 -10.08 6.65 99.48 0.66 -9.42 16 18 C 0.12 3.89 7.27 43.67 0.32 4.21 16 19 C -0.08 -2.06 10.30 71.24 0.73 -1.32 16 20 N -0.29 -8.63 12.46 -46.49 -0.58 -9.21 16 21 N -0.36 -10.18 3.99 -479.63 -1.91 -12.09 16 22 C 0.08 1.34 11.37 127.77 1.45 2.79 16 23 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 2.29 7.34 -2.38 -0.02 2.27 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.05 2.29 7.66 -2.39 -0.02 2.27 16 29 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 2.08 6.32 -2.39 -0.02 2.07 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -79.94 303.53 5.38 -74.56 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.04 Total: 8.28 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.65 Total: -8.94 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.19 Total: -81.72 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.95 Total: -38.48 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.83 Total: 46.31 kcal Total: -79.94 5.38 -74.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135125860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.563 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds