Wall clock time and date at job start Mon Mar 30 2020 04:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47401 * 2 1 4 4 C 1.52998 * 109.47245 * 294.70525 * 3 2 1 5 5 C 1.52998 * 109.47141 * 174.23551 * 4 3 2 6 6 C 1.50703 * 109.46758 * 174.70450 * 3 2 1 7 7 C 1.41175 * 126.69046 * 84.71847 * 6 3 2 8 8 C 1.36994 * 103.83785 * 179.89042 * 7 6 3 9 9 C 1.47299 * 126.95596 * 180.08529 * 8 7 6 10 10 O 1.21649 * 120.00112 * 0.30250 * 9 8 7 11 11 N 1.34772 * 119.99768 * 180.31246 * 9 8 7 12 12 C 1.36683 * 120.00353 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99379 * 359.97438 * 12 11 9 14 14 C 1.39159 * 120.00443 * 179.97438 * 12 11 9 15 15 N 1.31286 * 119.99946 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99707 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47052 * 90.00323 * 16 14 12 18 18 H 1.48504 * 109.47096 * 209.99752 * 16 14 12 19 19 H 1.48495 * 109.47511 * 329.99720 * 16 14 12 20 20 O 1.34669 * 106.08311 * 0.35753 * 8 7 6 21 21 N 1.20888 * 111.45155 * 359.75606 * 20 8 7 22 22 H 1.08998 * 109.47457 * 186.05254 * 1 2 3 23 23 H 1.09001 * 109.46750 * 306.05152 * 1 2 3 24 24 H 1.09001 * 109.47394 * 66.04235 * 1 2 3 25 25 H 1.09005 * 109.46769 * 239.99687 * 2 1 3 26 26 H 1.09006 * 109.47027 * 120.00593 * 2 1 3 27 27 H 1.08999 * 109.46990 * 54.70554 * 3 2 1 28 28 H 1.09000 * 109.47250 * 294.23011 * 4 3 2 29 29 H 1.09001 * 109.47302 * 54.22823 * 4 3 2 30 30 H 1.09003 * 109.47026 * 175.53723 * 5 4 3 31 31 H 1.09004 * 109.46911 * 295.53032 * 5 4 3 32 32 H 1.08993 * 109.47492 * 55.52978 * 5 4 3 33 33 H 1.08001 * 128.08502 * 359.97438 * 7 6 3 34 34 H 0.97001 * 120.00530 * 359.97438 * 11 9 8 35 35 H 0.97001 * 119.99831 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6416 2.1243 -1.3104 5 6 2.0244 3.6044 -1.2521 6 6 3.5413 1.4443 0.1311 7 6 4.4796 1.3065 -0.9147 8 6 5.6912 1.3758 -0.2791 9 6 7.0236 1.2894 -0.9011 10 8 7.1249 1.1459 -2.1048 11 7 8.1306 1.3689 -0.1364 12 6 9.3670 1.2882 -0.7133 13 1 9.4569 1.1602 -1.7820 14 6 10.5100 1.3709 0.0761 15 7 10.4008 1.5270 1.3751 16 14 12.1998 1.2599 -0.7125 17 1 12.6615 2.6205 -1.0872 18 1 13.1574 0.6602 0.2513 19 1 12.1239 0.4105 -1.9282 20 8 5.4173 1.5329 1.0300 21 7 4.2258 1.5678 1.2313 22 1 -0.3634 -1.0219 0.1084 23 1 -0.3633 0.6048 0.8309 24 1 -0.3634 0.4173 -0.9391 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5140 0.8900 27 1 1.6013 1.9829 0.8388 28 1 2.1617 1.6471 -2.1410 29 1 0.5652 2.0327 -1.4551 30 1 1.8134 4.0725 -2.2136 31 1 1.4450 4.0990 -0.4724 32 1 3.0872 3.6964 -1.0285 33 1 4.2872 1.1779 -1.9696 34 1 8.0499 1.4835 0.8234 35 1 11.1975 1.5843 1.9254 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162675922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:01 Heat of formation + Delta-G solvation = -21.653085 kcal Electronic energy + Delta-G solvation = -18275.296378 eV Core-core repulsion = 15275.076937 eV Total energy + Delta-G solvation = -3000.219441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.88706 -40.15456 -38.52573 -36.29771 -34.16411 -33.63187 -32.71553 -32.51691 -27.94401 -27.59307 -24.65452 -24.12510 -23.49416 -21.89932 -20.68858 -20.21499 -18.84654 -18.62990 -17.19222 -16.84234 -15.98513 -15.79081 -15.54281 -15.48777 -15.10676 -15.00881 -14.56892 -14.24599 -13.63965 -13.47186 -13.00087 -12.90147 -12.76999 -12.56906 -12.39764 -12.32468 -12.10627 -12.04896 -11.70055 -11.58719 -11.40218 -10.94210 -10.91704 -10.64926 -10.25416 -8.65200 -6.10632 -0.12440 1.10550 1.42701 1.43593 1.56838 1.84186 2.15103 2.24520 2.89331 3.03191 3.12140 3.59768 3.89862 4.02419 4.08934 4.20207 4.28371 4.37930 4.46835 4.55570 4.65272 4.74761 4.89042 4.97945 5.00779 5.09386 5.23297 5.24354 5.26776 5.31882 5.44405 5.48743 5.74848 6.29613 6.85944 7.04390 7.27767 7.75273 8.50978 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044239 B = 0.004389 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.769920 B = 6378.012881 C = 6541.535706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.007 4.007 4 C -0.113 4.113 5 C -0.155 4.155 6 C 0.041 3.959 7 C -0.174 4.174 8 C -0.057 4.057 9 C 0.493 3.507 10 O -0.609 6.609 11 N -0.527 5.527 12 C -0.340 4.340 13 H 0.097 0.903 14 C -0.004 4.004 15 N -0.899 5.899 16 Si 1.007 2.993 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.265 1.265 20 O 0.080 5.920 21 N -0.379 5.379 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.187 0.813 34 H 0.400 0.600 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.246 -0.010 -1.625 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.026 4.026 4 C -0.151 4.151 5 C -0.213 4.213 6 C -0.118 4.118 7 C -0.197 4.197 8 C -0.123 4.123 9 C 0.279 3.721 10 O -0.498 6.498 11 N -0.160 5.160 12 C -0.469 4.469 13 H 0.115 0.885 14 C -0.208 4.208 15 N -0.537 5.537 16 Si 0.828 3.172 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.189 1.189 20 O 0.017 5.983 21 N -0.087 5.087 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.205 0.795 34 H 0.235 0.765 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.298 0.072 -0.925 16.324 hybrid contribution 1.155 -0.025 -0.294 1.192 sum -15.143 0.047 -1.220 15.192 Atomic orbital electron populations 1.21784 0.92957 1.02566 1.02973 1.21546 0.97895 0.93747 1.02139 1.19894 0.83031 0.98676 1.00980 1.21658 1.03272 0.95020 0.95158 1.21817 1.00198 0.96687 1.02583 1.24012 0.99954 1.00442 0.87437 1.22810 0.88778 1.05630 1.02466 1.24454 0.97610 1.06167 0.84067 1.16451 0.81572 0.87788 0.86261 1.90641 1.85362 1.59554 1.14270 1.41904 1.05155 1.58657 1.10258 1.19964 0.82266 1.49550 0.95134 0.88494 1.26395 1.04080 0.94615 0.95660 1.69641 1.33274 1.45404 1.05394 0.84730 0.75120 0.79187 0.78149 1.19067 1.19180 1.18925 1.84960 1.19853 1.68146 1.25340 1.73659 0.89258 1.20470 1.25309 0.91852 0.92139 0.90869 0.91343 0.93182 0.88956 0.91312 0.87860 0.91242 0.91992 0.95477 0.79534 0.76497 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.53 71.98 0.69 -1.24 16 2 C -0.11 -2.21 5.38 30.59 0.16 -2.04 16 3 C -0.01 -0.14 2.31 -11.54 -0.03 -0.17 16 4 C -0.11 -2.02 5.02 30.59 0.15 -1.87 16 5 C -0.16 -3.12 9.80 71.98 0.71 -2.41 16 6 C 0.04 1.28 5.24 43.53 0.23 1.51 16 7 C -0.17 -6.17 9.75 22.70 0.22 -5.95 16 8 C -0.06 -2.46 7.29 24.36 0.18 -2.28 16 9 C 0.49 25.20 7.76 86.63 0.67 25.87 16 10 O -0.61 -34.24 16.49 -4.19 -0.07 -34.31 16 11 N -0.53 -28.09 5.27 -310.14 -1.63 -29.73 16 12 C -0.34 -18.86 9.68 84.16 0.81 -18.04 16 13 H 0.10 5.57 7.15 -2.91 -0.02 5.55 16 14 C 0.00 -0.21 5.50 85.00 0.47 0.26 16 15 N -0.90 -47.31 13.04 21.70 0.28 -47.03 16 16 Si 1.01 40.48 29.55 68.60 2.03 42.50 16 17 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 18 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 20 O 0.08 3.34 11.04 65.56 0.72 4.06 16 21 N -0.38 -14.13 12.04 -48.78 -0.59 -14.71 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.77 6.75 -2.39 -0.02 0.75 16 25 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 1.27 7.18 -2.39 -0.02 1.25 16 29 H 0.10 1.28 6.46 -2.39 -0.02 1.26 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.03 0.70 6.99 -2.39 -0.02 0.68 16 33 H 0.19 5.96 7.52 -2.91 -0.02 5.94 16 34 H 0.40 20.85 7.72 -92.71 -0.72 20.13 16 35 H 0.29 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -63.09 301.08 5.40 -57.70 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.39 Total: 27.89 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.26 Total: -6.37 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.94 Total: -91.47 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: 0.65 Total: -30.25 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -63.09 5.40 -57.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162675922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.043 kcal (2) G-P(sol) polarization free energy of solvation -63.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds