Wall clock time and date at job start Mon Mar 30 2020 03:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30009 * 127.33474 * 2 1 4 4 O 1.20652 * 112.32169 * 180.25213 * 3 2 1 5 5 C 1.33523 * 113.15663 * 359.73223 * 4 3 2 6 6 C 1.50697 * 126.83169 * 180.02562 * 5 4 3 7 7 C 1.37418 * 106.32551 * 359.97438 * 5 4 3 8 8 C 1.47326 * 128.56576 * 179.97438 * 7 5 4 9 9 O 1.21639 * 119.99891 * 87.07198 * 8 7 5 10 10 N 1.34768 * 120.00148 * 267.07252 * 8 7 5 11 11 C 1.36973 * 120.00160 * 185.56956 * 10 8 7 12 12 H 1.07998 * 119.99813 * 320.69800 * 11 10 8 13 13 C 1.38980 * 120.00486 * 140.68751 * 11 10 8 14 14 N 1.31416 * 119.99794 * 351.64772 * 13 11 10 15 15 Si 1.86790 * 120.00470 * 171.64303 * 13 11 10 16 16 H 1.48500 * 109.47333 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47263 * 120.00394 * 15 13 11 18 18 H 1.48497 * 109.47237 * 240.00447 * 15 13 11 19 19 C 1.46498 * 120.00365 * 5.56805 * 10 8 7 20 20 C 1.52997 * 109.47162 * 304.06033 * 19 10 8 21 21 C 1.53008 * 109.46848 * 64.05334 * 19 10 8 22 22 H 1.09005 * 109.47210 * 270.17840 * 1 2 3 23 23 H 1.09005 * 109.47536 * 30.17307 * 1 2 3 24 24 H 1.08997 * 109.47155 * 150.17602 * 1 2 3 25 25 H 1.08999 * 109.47040 * 269.99682 * 6 5 4 26 26 H 1.08999 * 109.47369 * 29.99845 * 6 5 4 27 27 H 1.09000 * 109.47104 * 150.00170 * 6 5 4 28 28 H 0.96999 * 120.00284 * 179.97438 * 14 13 11 29 29 H 1.08996 * 109.47714 * 184.04822 * 19 10 8 30 30 H 1.08993 * 109.47727 * 82.09822 * 20 19 10 31 31 H 1.09005 * 109.46888 * 202.10044 * 20 19 10 32 32 H 1.09002 * 109.47072 * 322.09521 * 20 19 10 33 33 H 1.09006 * 109.47079 * 48.39162 * 21 19 10 34 34 H 1.09001 * 109.47113 * 168.38972 * 21 19 10 35 35 H 1.08993 * 109.47151 * 288.39757 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7212 -0.0049 5 6 3.6500 -0.6006 -0.0034 6 6 4.9719 -1.3240 -0.0077 7 6 2.3992 -1.1698 0.0042 8 6 2.0404 -2.5987 0.0082 9 8 1.9501 -3.2001 1.0617 10 7 1.8123 -3.2395 -1.1552 11 6 1.3682 -4.5352 -1.1478 12 1 1.7596 -5.2360 -0.4253 13 6 0.4139 -4.9481 -2.0699 14 7 -0.1824 -4.0647 -2.8387 15 14 -0.0212 -6.7587 -2.2167 16 1 0.7849 -7.5418 -1.2461 17 1 -1.4652 -6.9461 -1.9252 18 1 0.2704 -7.2277 -3.5952 19 6 2.0391 -2.5503 -2.4279 20 6 1.2178 -1.2599 -2.4626 21 6 3.5250 -2.2129 -2.5673 22 1 -0.3634 0.0032 1.0277 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5111 25 1 5.2863 -1.5003 -1.0364 26 1 5.7201 -0.7168 0.5018 27 1 4.8657 -2.2782 0.5082 28 1 -0.8482 -4.3528 -3.4825 29 1 1.7348 -3.1971 -3.2507 30 1 1.7522 -0.4745 -1.9281 31 1 1.0638 -0.9550 -3.4977 32 1 0.2522 -1.4309 -1.9867 33 1 4.1213 -3.0962 -2.3381 34 1 3.7302 -1.8909 -3.5883 35 1 3.7821 -1.4114 -1.8749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163281058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:33 Heat of formation + Delta-G solvation = 41.983481 kcal Electronic energy + Delta-G solvation = -20116.123187 eV Core-core repulsion = 17118.663234 eV Total energy + Delta-G solvation = -2997.459953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.40945 -38.84325 -35.41075 -34.27112 -33.43303 -32.05700 -30.20435 -28.48940 -27.85640 -26.06735 -25.30592 -23.30595 -21.17063 -19.87245 -18.95217 -17.60469 -16.94185 -16.31874 -15.49578 -14.92515 -14.25067 -14.07402 -13.67603 -13.64861 -13.11437 -13.06178 -12.80549 -12.67582 -12.29101 -12.09913 -11.86698 -11.78941 -11.25924 -11.13661 -11.08806 -10.60878 -10.57354 -10.30440 -10.16984 -10.10635 -9.14333 -8.93968 -8.73122 -8.52632 -7.54630 -6.38015 -4.07959 1.85451 2.48708 3.11532 3.22776 3.28231 3.38910 3.65732 4.09960 4.52488 4.76825 4.89157 4.97562 5.42487 5.50362 5.60630 5.70858 5.77902 5.85265 5.88206 6.01477 6.03621 6.10183 6.18782 6.29577 6.38130 6.45343 6.49432 6.69002 6.73688 7.21156 7.28075 7.51007 8.20829 8.44640 8.72384 9.08405 9.30819 9.91725 10.67168 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.008435 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.852502 B = 3318.796680 C = 3478.908301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.059 3.941 3 N -0.371 5.371 4 O 0.081 5.919 5 C -0.022 4.022 6 C -0.076 4.076 7 C -0.194 4.194 8 C 0.532 3.468 9 O -0.572 6.572 10 N -0.422 5.422 11 C -0.310 4.310 12 H 0.092 0.908 13 C 0.038 3.962 14 N -0.872 5.872 15 Si 0.924 3.076 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.142 3.858 20 C -0.154 4.154 21 C -0.184 4.184 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.268 0.732 29 H 0.111 0.889 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 5.617 -0.984 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 N -0.080 5.080 4 O 0.020 5.980 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.201 4.201 8 C 0.319 3.681 9 O -0.455 6.455 10 N -0.140 5.140 11 C -0.438 4.438 12 H 0.110 0.890 13 C -0.166 4.166 14 N -0.510 5.510 15 Si 0.751 3.249 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.038 3.962 20 C -0.212 4.212 21 C -0.242 4.242 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.020 6.591 -0.642 8.310 hybrid contribution -0.458 -1.506 -0.323 1.607 sum 4.561 5.085 -0.965 6.899 Atomic orbital electron populations 1.20408 0.85725 1.04397 1.03365 1.24600 0.98451 0.87117 1.00137 1.73511 0.89313 1.23564 1.21639 1.84420 1.21379 1.22881 1.69309 1.24377 0.97664 0.83522 1.02883 1.20552 0.89048 0.99404 1.04343 1.22493 0.91763 0.96931 1.08938 1.16976 0.83150 0.82983 0.85026 1.90647 1.56617 1.66999 1.31252 1.43507 1.56180 1.11699 1.02654 1.19527 1.20568 0.85276 1.18389 0.88985 1.25469 0.94615 0.99704 0.96797 1.69905 1.25072 1.33491 1.22535 0.85902 0.78501 0.82470 0.78070 1.19178 1.20662 1.20686 1.20931 0.91517 0.94099 0.89675 1.22531 1.01354 0.96694 1.00611 1.22825 0.98544 1.01566 1.01265 0.90378 0.90633 0.88570 0.88889 0.90090 0.88864 0.92196 0.87072 0.93957 0.93687 0.90837 0.92511 0.92890 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.79 36.01 0.35 -1.05 16 2 C 0.06 1.13 4.93 -79.76 -0.39 0.74 16 3 N -0.37 -6.92 12.00 34.79 0.42 -6.51 16 4 O 0.08 1.43 11.06 18.58 0.21 1.63 16 5 C -0.02 -0.39 5.63 -34.61 -0.19 -0.59 16 6 C -0.08 -1.04 9.69 36.00 0.35 -0.69 16 7 C -0.19 -4.03 3.28 -102.90 -0.34 -4.36 16 8 C 0.53 13.12 6.96 -12.57 -0.09 13.04 16 9 O -0.57 -16.11 16.98 5.24 0.09 -16.02 16 10 N -0.42 -10.42 2.46 -108.97 -0.27 -10.69 16 11 C -0.31 -8.27 8.96 -14.98 -0.13 -8.40 16 12 H 0.09 2.57 7.68 -52.49 -0.40 2.16 16 13 C 0.04 0.98 5.05 -17.45 -0.09 0.89 16 14 N -0.87 -22.18 11.13 55.50 0.62 -21.56 16 15 Si 0.92 20.04 29.56 -169.99 -5.03 15.01 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.14 3.08 2.29 -67.93 -0.16 2.92 16 20 C -0.15 -3.12 7.32 37.16 0.27 -2.85 16 21 C -0.18 -3.29 8.04 37.16 0.30 -2.99 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.10 1.82 5.86 -51.93 -0.30 1.52 16 25 H 0.09 1.13 6.18 -51.93 -0.32 0.81 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.11 2.64 6.01 -51.93 -0.31 2.33 16 30 H 0.04 0.82 3.89 -51.93 -0.20 0.62 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.62 5.57 -51.93 -0.29 1.33 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.02 2.43 -51.93 -0.13 0.89 16 LS Contribution 279.34 15.07 4.21 4.21 Total: -1.00 -29.96 279.34 -3.92 -33.88 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.05 Total: 3.39 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.12 Total: -3.35 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.77 Total: -38.75 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.29 Total: -14.39 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.96 -3.92 -33.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163281058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.862 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds