Wall clock time and date at job start Mon Mar 30 2020 03:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30009 * 127.33474 * 2 1 4 4 O 1.20652 * 112.32169 * 180.25213 * 3 2 1 5 5 C 1.33523 * 113.15663 * 359.73223 * 4 3 2 6 6 C 1.50697 * 126.83169 * 180.02562 * 5 4 3 7 7 C 1.37418 * 106.32551 * 359.97438 * 5 4 3 8 8 C 1.47326 * 128.56576 * 179.97438 * 7 5 4 9 9 O 1.21639 * 119.99891 * 87.07198 * 8 7 5 10 10 N 1.34768 * 120.00148 * 267.07252 * 8 7 5 11 11 C 1.36973 * 120.00160 * 185.56956 * 10 8 7 12 12 H 1.07998 * 119.99813 * 320.69800 * 11 10 8 13 13 C 1.38980 * 120.00486 * 140.68751 * 11 10 8 14 14 N 1.31416 * 119.99794 * 351.64772 * 13 11 10 15 15 Si 1.86790 * 120.00470 * 171.64303 * 13 11 10 16 16 H 1.48500 * 109.47333 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47263 * 120.00394 * 15 13 11 18 18 H 1.48497 * 109.47237 * 240.00447 * 15 13 11 19 19 C 1.46498 * 120.00365 * 5.56805 * 10 8 7 20 20 C 1.52997 * 109.47162 * 304.06033 * 19 10 8 21 21 C 1.53008 * 109.46848 * 64.05334 * 19 10 8 22 22 H 1.09005 * 109.47210 * 270.17840 * 1 2 3 23 23 H 1.09005 * 109.47536 * 30.17307 * 1 2 3 24 24 H 1.08997 * 109.47155 * 150.17602 * 1 2 3 25 25 H 1.08999 * 109.47040 * 269.99682 * 6 5 4 26 26 H 1.08999 * 109.47369 * 29.99845 * 6 5 4 27 27 H 1.09000 * 109.47104 * 150.00170 * 6 5 4 28 28 H 0.96999 * 120.00284 * 179.97438 * 14 13 11 29 29 H 1.08996 * 109.47714 * 184.04822 * 19 10 8 30 30 H 1.08993 * 109.47727 * 82.09822 * 20 19 10 31 31 H 1.09005 * 109.46888 * 202.10044 * 20 19 10 32 32 H 1.09002 * 109.47072 * 322.09521 * 20 19 10 33 33 H 1.09006 * 109.47079 * 48.39162 * 21 19 10 34 34 H 1.09001 * 109.47113 * 168.38972 * 21 19 10 35 35 H 1.08993 * 109.47151 * 288.39757 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7212 -0.0049 5 6 3.6500 -0.6006 -0.0034 6 6 4.9719 -1.3240 -0.0077 7 6 2.3992 -1.1698 0.0042 8 6 2.0404 -2.5987 0.0082 9 8 1.9501 -3.2001 1.0617 10 7 1.8123 -3.2395 -1.1552 11 6 1.3682 -4.5352 -1.1478 12 1 1.7596 -5.2360 -0.4253 13 6 0.4139 -4.9481 -2.0699 14 7 -0.1824 -4.0647 -2.8387 15 14 -0.0212 -6.7587 -2.2167 16 1 0.7849 -7.5418 -1.2461 17 1 -1.4652 -6.9461 -1.9252 18 1 0.2704 -7.2277 -3.5952 19 6 2.0391 -2.5503 -2.4279 20 6 1.2178 -1.2599 -2.4626 21 6 3.5250 -2.2129 -2.5673 22 1 -0.3634 0.0032 1.0277 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5111 25 1 5.2863 -1.5003 -1.0364 26 1 5.7201 -0.7168 0.5018 27 1 4.8657 -2.2782 0.5082 28 1 -0.8482 -4.3528 -3.4825 29 1 1.7348 -3.1971 -3.2507 30 1 1.7522 -0.4745 -1.9281 31 1 1.0638 -0.9550 -3.4977 32 1 0.2522 -1.4309 -1.9867 33 1 4.1213 -3.0962 -2.3381 34 1 3.7302 -1.8909 -3.5883 35 1 3.7821 -1.4114 -1.8749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163281058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:33 Heat of formation + Delta-G solvation = 23.352370 kcal Electronic energy + Delta-G solvation = -20116.931092 eV Core-core repulsion = 17118.663234 eV Total energy + Delta-G solvation = -2998.267858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.88805 -40.67206 -37.30918 -35.83299 -34.89489 -33.82267 -32.02139 -29.91565 -29.25460 -27.55810 -27.14134 -25.00281 -22.85152 -21.42935 -20.56943 -19.29467 -18.56262 -17.92982 -17.35190 -16.65711 -16.03967 -15.72353 -15.28439 -15.05970 -14.67178 -14.58360 -14.25379 -14.17069 -13.77501 -13.55691 -13.43617 -13.34023 -12.99800 -12.86215 -12.59941 -12.37239 -12.10375 -12.02274 -11.80382 -11.77162 -10.87986 -10.66200 -10.54577 -10.08753 -9.47614 -8.33284 -6.11444 0.41242 0.96112 1.36312 1.43324 1.55691 1.77657 2.02520 2.30049 2.94180 3.01768 3.24257 3.38310 3.94684 4.09312 4.20938 4.29135 4.42752 4.52627 4.57150 4.57719 4.66566 4.69848 4.78816 4.80266 4.94619 4.96840 5.09166 5.13805 5.22256 5.44363 5.49723 5.64288 6.22037 6.51969 7.12054 7.27065 7.39669 7.99650 8.70190 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.008435 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.852502 B = 3318.796680 C = 3478.908301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.372 5.372 4 O 0.094 5.906 5 C 0.006 3.994 6 C -0.079 4.079 7 C -0.235 4.235 8 C 0.530 3.470 9 O -0.623 6.623 10 N -0.426 5.426 11 C -0.345 4.345 12 H 0.068 0.932 13 C 0.008 3.992 14 N -0.882 5.882 15 Si 0.985 3.015 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.266 1.266 19 C 0.138 3.862 20 C -0.142 4.142 21 C -0.176 4.176 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.274 0.726 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 6.608 -1.998 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 N -0.081 5.081 4 O 0.033 5.967 5 C -0.057 4.057 6 C -0.136 4.136 7 C -0.242 4.242 8 C 0.318 3.682 9 O -0.510 6.510 10 N -0.143 5.143 11 C -0.473 4.473 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.519 5.519 15 Si 0.809 3.191 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.190 1.190 19 C 0.034 3.966 20 C -0.200 4.200 21 C -0.233 4.233 22 H 0.106 0.894 23 H 0.119 0.881 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.139 0.861 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.059 7.614 -1.698 9.878 hybrid contribution -0.769 -1.788 -0.016 1.947 sum 5.290 5.826 -1.714 8.054 Atomic orbital electron populations 1.20425 0.84817 1.04412 1.04062 1.24819 0.99252 0.86700 1.00082 1.73501 0.89511 1.23143 1.21928 1.84428 1.20963 1.22621 1.68670 1.24939 0.98090 0.83267 0.99418 1.20790 0.87903 0.98928 1.05972 1.22114 0.93808 0.95183 1.13120 1.17331 0.82323 0.84353 0.84182 1.90591 1.58918 1.68691 1.32849 1.43700 1.55473 1.11302 1.03844 1.19497 1.22333 0.86337 1.19134 0.91453 1.26138 0.93939 1.03494 0.95928 1.69977 1.24764 1.34898 1.22279 0.84999 0.77893 0.77742 0.78457 1.19701 1.20460 1.19048 1.21042 0.94306 0.93840 0.87396 1.22400 1.00102 0.96278 1.01236 1.22744 0.95512 1.01853 1.03240 0.89386 0.88102 0.90901 0.86842 0.86122 0.90275 0.91678 0.89441 0.92939 0.92385 0.93038 0.92669 0.90205 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 9.79 71.24 0.70 -2.01 16 2 C 0.05 2.00 4.93 45.16 0.22 2.22 16 3 N -0.37 -13.07 12.00 -44.74 -0.54 -13.61 16 4 O 0.09 3.03 11.06 76.72 0.85 3.88 16 5 C 0.01 0.19 5.63 25.49 0.14 0.33 16 6 C -0.08 -1.92 9.69 71.23 0.69 -1.23 16 7 C -0.23 -9.64 3.28 -18.75 -0.06 -9.70 16 8 C 0.53 26.79 6.96 86.64 0.60 27.40 16 9 O -0.62 -36.65 16.98 -4.15 -0.07 -36.72 16 10 N -0.43 -21.53 2.46 -616.90 -1.52 -23.04 16 11 C -0.34 -19.05 8.96 84.07 0.75 -18.30 16 12 H 0.07 3.96 7.68 -2.91 -0.02 3.94 16 13 C 0.01 0.43 5.05 84.93 0.43 0.86 16 14 N -0.88 -45.11 11.13 21.67 0.24 -44.87 16 15 Si 0.99 41.35 29.56 68.60 2.03 43.38 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 19 C 0.14 5.93 2.29 44.99 0.10 6.03 16 20 C -0.14 -5.68 7.32 71.98 0.53 -5.15 16 21 C -0.18 -5.96 8.04 71.98 0.58 -5.38 16 22 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 23 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 24 H 0.07 2.83 5.86 -2.39 -0.01 2.81 16 25 H 0.11 2.36 6.18 -2.39 -0.01 2.34 16 26 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 28 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 29 H 0.09 4.17 6.01 -2.39 -0.01 4.16 16 30 H 0.05 1.97 3.89 -2.39 -0.01 1.96 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.05 2.28 5.57 -2.39 -0.01 2.27 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.21 2.43 -2.39 -0.01 2.20 16 Total: -1.00 -66.26 279.34 6.80 -59.46 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.12 Total: 16.45 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.69 Total: -4.93 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.81 Total: -81.53 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: 0.78 Total: -32.84 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -66.26 6.80 -59.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163281058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.810 kcal (2) G-P(sol) polarization free energy of solvation -66.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds