Wall clock time and date at job start Mon Mar 30 2020 03:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47783 * 2 1 4 4 N 1.29940 * 126.28617 * 120.00432 * 3 2 1 5 5 O 1.21299 * 110.25396 * 180.02562 * 4 3 2 6 6 C 1.33644 * 109.80895 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.55345 * 180.26346 * 6 5 4 8 8 C 1.50697 * 109.46940 * 269.69479 * 7 6 5 9 9 H 1.07995 * 120.00585 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99581 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00060 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99815 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47105 * 120.00204 * 12 10 8 15 15 H 1.48501 * 109.47256 * 239.99900 * 12 10 8 16 16 N 1.31134 * 106.89611 * 0.02562 * 6 5 4 17 17 C 1.53088 * 109.48216 * 120.02247 * 2 1 3 18 18 C 1.53175 * 109.16334 * 62.38645 * 17 2 1 19 19 C 1.53178 * 109.03888 * 56.97911 * 18 17 2 20 20 C 1.53087 * 109.16218 * 303.02193 * 19 18 17 21 21 O 1.42898 * 109.48987 * 239.97098 * 2 1 3 22 22 H 1.09000 * 109.47026 * 60.00280 * 1 2 3 23 23 H 1.08998 * 109.46870 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47129 * 300.00049 * 1 2 3 25 25 H 1.09007 * 109.46611 * 29.69262 * 7 6 5 26 26 H 1.08999 * 109.47203 * 149.69394 * 7 6 5 27 27 H 0.97003 * 120.00100 * 179.97438 * 11 10 8 28 28 H 1.09000 * 109.52450 * 182.28979 * 17 2 1 29 29 H 1.09001 * 109.52400 * 302.41802 * 17 2 1 30 30 H 1.09005 * 109.54874 * 176.84785 * 18 17 2 31 31 H 1.09003 * 109.54521 * 297.11612 * 18 17 2 32 32 H 1.09002 * 109.52215 * 62.92607 * 19 18 17 33 33 H 1.08994 * 109.52518 * 183.05232 * 19 18 17 34 34 H 1.09004 * 109.48140 * 177.58760 * 20 19 18 35 35 H 1.09000 * 109.48372 * 297.61233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.7828 1.9711 0.9070 5 8 3.0131 3.1262 0.6172 6 6 2.4139 3.4315 -0.5377 7 6 2.4560 4.7607 -1.2468 8 6 1.3077 5.6166 -0.7780 9 1 0.6163 5.2361 -0.0407 10 6 1.1397 6.8856 -1.2904 11 7 1.9819 7.3492 -2.1878 12 14 -0.2841 7.9464 -0.7098 13 1 -1.0801 7.1988 0.2964 14 1 0.2441 9.1915 -0.0968 15 1 -1.1477 8.2923 -1.8673 16 7 1.7867 2.3520 -0.9387 17 6 2.0406 -0.7221 1.2496 18 6 1.5761 -2.1812 1.2122 19 6 2.0770 -2.8321 -0.0808 20 6 1.5650 -2.0285 -1.2790 21 8 2.0068 -0.6741 -1.1663 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.3978 5.2620 -1.0233 26 1 2.3752 4.6015 -2.3221 27 1 1.8635 8.2418 -2.5486 28 1 3.1298 -0.6871 1.2711 29 1 1.6429 -0.2350 2.1399 30 1 1.9829 -2.7156 2.0708 31 1 0.4870 -2.2181 1.2407 32 1 3.1669 -2.8397 -0.0862 33 1 1.7053 -3.8549 -0.1414 34 1 1.9537 -2.4622 -2.2004 35 1 0.4755 -2.0554 -1.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235436766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:09 Heat of formation + Delta-G solvation = 6.156738 kcal Electronic energy + Delta-G solvation = -18777.843865 eV Core-core repulsion = 15778.830348 eV Total energy + Delta-G solvation = -2999.013517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.77468 -39.95170 -35.23173 -34.04441 -33.76595 -32.56484 -31.17600 -28.54068 -28.13170 -24.79155 -24.23711 -23.75614 -22.23651 -20.82057 -19.15546 -17.50369 -17.14522 -16.30835 -16.12899 -15.80227 -15.08814 -14.75397 -14.71260 -13.79128 -13.45523 -12.96017 -12.79007 -12.49993 -12.43129 -12.27290 -12.00018 -11.43608 -11.36374 -11.16098 -11.09487 -10.95839 -10.83407 -10.79034 -10.30576 -10.26991 -10.08431 -9.83736 -9.46699 -8.93215 -8.60830 -6.23799 -4.29257 1.91450 2.88404 3.23777 3.31502 3.36595 3.60801 3.83386 4.18298 4.33523 4.56954 4.63583 4.69231 4.80022 4.96676 5.10196 5.18417 5.25366 5.40786 5.49305 5.56479 5.60771 5.70506 5.78024 5.83783 5.98422 6.04270 6.05377 6.30645 6.60326 6.71501 7.14437 7.18247 7.21927 7.69896 7.93580 8.71162 8.95262 9.35441 10.86736 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.041564 B = 0.004797 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.501809 B = 5835.638477 C = 5908.602266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.218 3.782 3 C 0.170 3.830 4 N -0.397 5.397 5 O 0.064 5.936 6 C 0.236 3.764 7 C 0.101 3.899 8 C -0.522 4.522 9 H 0.062 0.938 10 C 0.066 3.934 11 N -0.888 5.888 12 Si 0.906 3.094 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.281 1.281 16 N -0.491 5.491 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.158 4.158 20 C 0.058 3.942 21 O -0.362 6.362 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.267 0.733 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 -16.984 4.392 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.177 3.823 3 C -0.104 4.104 4 N -0.110 5.110 5 O 0.007 5.993 6 C 0.018 3.982 7 C 0.062 3.938 8 C -0.561 4.561 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.525 5.525 12 Si 0.733 3.267 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 N -0.224 5.224 17 C -0.175 4.175 18 C -0.159 4.159 19 C -0.195 4.195 20 C -0.019 4.019 21 O -0.280 6.280 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.187 -17.412 4.559 18.038 hybrid contribution -0.818 0.661 0.368 1.114 sum -2.004 -16.751 4.927 17.575 Atomic orbital electron populations 1.22377 0.93713 1.02720 1.04264 1.19118 0.93187 0.83352 0.86602 1.25005 0.97838 0.97954 0.89588 1.74461 1.19074 0.93266 1.24240 1.85258 1.56292 1.21250 1.36473 1.30206 0.86181 0.98747 0.83060 1.18220 1.00295 0.80000 0.95296 1.20835 1.11117 0.98885 1.25308 0.92005 1.24927 0.96708 0.97468 0.94617 1.69934 1.36286 1.18082 1.28213 0.86301 0.81690 0.79988 0.78717 1.19602 1.20626 1.20640 1.71930 1.24117 0.99335 1.27059 1.22070 1.02531 0.95524 0.97363 1.21643 1.01176 0.95172 0.97921 1.22222 1.02165 0.99551 0.95610 1.22637 0.99065 0.81814 0.98369 1.88062 1.73284 1.24447 1.42197 0.90297 0.91063 0.91279 0.92348 0.91259 0.92326 0.90481 0.90279 0.91153 0.91337 0.90994 0.90784 0.88591 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 7.92 37.16 0.29 -2.13 16 2 C 0.22 3.52 1.07 -91.72 -0.10 3.42 16 3 C 0.17 3.47 6.78 -156.38 -1.06 2.41 16 4 N -0.40 -8.33 11.47 30.90 0.35 -7.98 16 5 O 0.06 1.41 11.31 18.10 0.20 1.62 16 6 C 0.24 5.51 7.70 -13.06 -0.10 5.41 16 7 C 0.10 2.51 5.60 -29.04 -0.16 2.35 16 8 C -0.52 -14.15 9.09 -34.44 -0.31 -14.46 16 9 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 12 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 N -0.49 -11.31 11.55 -9.87 -0.11 -11.42 16 17 C -0.14 -1.83 4.42 -26.60 -0.12 -1.94 16 18 C -0.12 -1.19 5.72 -26.55 -0.15 -1.34 16 19 C -0.16 -1.47 6.14 -26.59 -0.16 -1.63 16 20 C 0.06 0.64 6.51 37.20 0.24 0.89 16 21 O -0.36 -5.88 10.22 -35.23 -0.36 -6.24 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.07 0.77 4.98 -51.93 -0.26 0.51 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.45 8.14 -51.92 -0.42 1.02 16 26 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.60 6.62 -51.93 -0.34 0.26 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.56 6.35 -51.93 -0.33 0.23 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -29.64 290.52 -6.25 -35.89 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.70 Total: -2.65 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.73 Total: -5.35 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.98 Total: -43.45 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.16 Total: -4.62 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.64 -6.25 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235436766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.051 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds