Wall clock time and date at job start Mon Mar 30 2020 03:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47783 * 2 1 4 4 N 1.29940 * 126.28617 * 120.00432 * 3 2 1 5 5 O 1.21299 * 110.25396 * 180.02562 * 4 3 2 6 6 C 1.33644 * 109.80895 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.55345 * 180.26346 * 6 5 4 8 8 C 1.50697 * 109.46940 * 269.69479 * 7 6 5 9 9 H 1.07995 * 120.00585 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99581 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00060 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99815 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47105 * 120.00204 * 12 10 8 15 15 H 1.48501 * 109.47256 * 239.99900 * 12 10 8 16 16 N 1.31134 * 106.89611 * 0.02562 * 6 5 4 17 17 C 1.53088 * 109.48216 * 120.02247 * 2 1 3 18 18 C 1.53175 * 109.16334 * 62.38645 * 17 2 1 19 19 C 1.53178 * 109.03888 * 56.97911 * 18 17 2 20 20 C 1.53087 * 109.16218 * 303.02193 * 19 18 17 21 21 O 1.42898 * 109.48987 * 239.97098 * 2 1 3 22 22 H 1.09000 * 109.47026 * 60.00280 * 1 2 3 23 23 H 1.08998 * 109.46870 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47129 * 300.00049 * 1 2 3 25 25 H 1.09007 * 109.46611 * 29.69262 * 7 6 5 26 26 H 1.08999 * 109.47203 * 149.69394 * 7 6 5 27 27 H 0.97003 * 120.00100 * 179.97438 * 11 10 8 28 28 H 1.09000 * 109.52450 * 182.28979 * 17 2 1 29 29 H 1.09001 * 109.52400 * 302.41802 * 17 2 1 30 30 H 1.09005 * 109.54874 * 176.84785 * 18 17 2 31 31 H 1.09003 * 109.54521 * 297.11612 * 18 17 2 32 32 H 1.09002 * 109.52215 * 62.92607 * 19 18 17 33 33 H 1.08994 * 109.52518 * 183.05232 * 19 18 17 34 34 H 1.09004 * 109.48140 * 177.58760 * 20 19 18 35 35 H 1.09000 * 109.48372 * 297.61233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.7828 1.9711 0.9070 5 8 3.0131 3.1262 0.6172 6 6 2.4139 3.4315 -0.5377 7 6 2.4560 4.7607 -1.2468 8 6 1.3077 5.6166 -0.7780 9 1 0.6163 5.2361 -0.0407 10 6 1.1397 6.8856 -1.2904 11 7 1.9819 7.3492 -2.1878 12 14 -0.2841 7.9464 -0.7098 13 1 -1.0801 7.1988 0.2964 14 1 0.2441 9.1915 -0.0968 15 1 -1.1477 8.2923 -1.8673 16 7 1.7867 2.3520 -0.9387 17 6 2.0406 -0.7221 1.2496 18 6 1.5761 -2.1812 1.2122 19 6 2.0770 -2.8321 -0.0808 20 6 1.5650 -2.0285 -1.2790 21 8 2.0068 -0.6741 -1.1663 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.3978 5.2620 -1.0233 26 1 2.3752 4.6015 -2.3221 27 1 1.8635 8.2418 -2.5486 28 1 3.1298 -0.6871 1.2711 29 1 1.6429 -0.2350 2.1399 30 1 1.9829 -2.7156 2.0708 31 1 0.4870 -2.2181 1.2407 32 1 3.1669 -2.8397 -0.0862 33 1 1.7053 -3.8549 -0.1414 34 1 1.9537 -2.4622 -2.2004 35 1 0.4755 -2.0554 -1.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235436766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:08 Heat of formation + Delta-G solvation = -13.862672 kcal Electronic energy + Delta-G solvation = -18778.711972 eV Core-core repulsion = 15778.830348 eV Total energy + Delta-G solvation = -2999.881624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.50503 -41.01873 -36.90569 -35.86494 -34.84269 -34.14678 -32.64366 -30.40121 -29.22628 -26.21749 -25.88760 -24.97895 -23.80099 -22.26447 -20.19757 -19.30205 -18.74646 -18.24854 -17.29392 -17.17228 -16.71708 -15.95042 -15.76889 -15.19033 -14.76964 -14.47744 -14.20266 -14.04975 -13.70033 -13.37016 -13.25029 -13.18105 -12.88197 -12.66219 -12.63386 -12.36271 -12.19257 -12.07163 -11.94855 -11.79940 -11.77455 -11.21548 -10.78322 -10.68176 -10.46522 -8.31320 -6.44937 0.16140 1.19477 1.43236 1.44706 1.56999 1.95722 2.32246 2.40798 2.82727 3.05008 3.29214 3.58617 3.77364 3.88413 4.00183 4.04038 4.26234 4.40633 4.43588 4.49093 4.66796 4.76263 4.83861 4.86492 4.93220 4.96882 5.01928 5.07932 5.10059 5.15329 5.23438 5.38558 5.58462 5.86671 6.14896 6.59562 7.18498 7.23916 8.80007 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.041564 B = 0.004797 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.501809 B = 5835.638477 C = 5908.602266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 C 0.171 3.829 4 N -0.398 5.398 5 O 0.055 5.945 6 C 0.228 3.772 7 C 0.110 3.890 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.022 3.978 11 N -0.916 5.916 12 Si 0.973 3.027 13 H -0.270 1.270 14 H -0.270 1.270 15 H -0.273 1.273 16 N -0.508 5.508 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.153 4.153 20 C 0.047 3.953 21 O -0.395 6.395 22 H 0.057 0.943 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 -18.658 5.199 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.171 3.829 3 C -0.103 4.103 4 N -0.113 5.113 5 O 0.002 5.998 6 C 0.010 3.990 7 C 0.071 3.929 8 C -0.582 4.582 9 H 0.072 0.928 10 C -0.179 4.179 11 N -0.554 5.554 12 Si 0.796 3.204 13 H -0.195 1.195 14 H -0.195 1.195 15 H -0.199 1.199 16 N -0.242 5.242 17 C -0.171 4.171 18 C -0.154 4.154 19 C -0.190 4.190 20 C -0.029 4.029 21 O -0.314 6.314 22 H 0.076 0.924 23 H 0.127 0.873 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.533 -19.087 5.372 19.990 hybrid contribution -0.353 1.096 0.076 1.154 sum -2.885 -17.991 5.448 19.018 Atomic orbital electron populations 1.22366 0.92136 1.04855 1.03189 1.19434 0.94267 0.81169 0.88042 1.25965 0.96499 0.99628 0.88181 1.74444 1.19575 0.92747 1.24523 1.85242 1.56478 1.22020 1.36081 1.29835 0.87022 0.98508 0.83665 1.17932 0.99697 0.80725 0.94532 1.21037 1.11727 0.99770 1.25625 0.92783 1.25757 0.99180 0.98496 0.94477 1.70016 1.37751 1.18750 1.28929 0.85282 0.78433 0.78262 0.78378 1.19463 1.19549 1.19852 1.71928 1.24369 0.99824 1.28097 1.22057 1.01384 0.97930 0.95732 1.21677 1.02268 0.92422 0.98991 1.22210 1.01687 1.00803 0.94312 1.22998 1.00195 0.79667 1.00022 1.88005 1.74056 1.27084 1.42276 0.92420 0.87313 0.91262 0.92760 0.92806 0.91777 0.92240 0.90484 0.89242 0.89627 0.91909 0.87548 0.87314 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 7.92 71.98 0.57 -3.86 16 2 C 0.21 6.64 1.07 -11.51 -0.01 6.63 16 3 C 0.17 7.07 6.78 138.47 0.94 8.00 16 4 N -0.40 -16.93 11.47 -60.34 -0.69 -17.62 16 5 O 0.06 2.51 11.31 74.83 0.85 3.36 16 6 C 0.23 10.99 7.70 88.38 0.68 11.68 16 7 C 0.11 5.69 5.60 29.10 0.16 5.85 16 8 C -0.54 -29.97 9.09 25.60 0.23 -29.73 16 9 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 10 C 0.02 1.17 5.46 84.66 0.46 1.64 16 11 N -0.92 -51.57 13.29 21.45 0.28 -51.29 16 12 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 N -0.51 -23.93 11.55 -303.21 -3.50 -27.43 16 17 C -0.13 -3.34 4.42 30.68 0.14 -3.21 16 18 C -0.12 -1.87 5.72 30.71 0.18 -1.70 16 19 C -0.15 -2.32 6.14 30.68 0.19 -2.14 16 20 C 0.05 0.92 6.51 72.01 0.47 1.39 16 21 O -0.39 -12.46 10.22 -148.98 -1.52 -13.99 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.11 1.99 4.98 -2.39 -0.01 1.98 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 2.80 8.14 -2.38 -0.02 2.78 16 26 H 0.05 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.11 6.62 -2.39 -0.02 1.10 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.18 6.35 -2.39 -0.02 1.16 16 Total: -1.00 -64.37 290.52 2.53 -61.83 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.09 Total: 6.10 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.00 Total: -5.45 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -3.91 Total: -96.35 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.68 Total: -10.63 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -64.37 2.53 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235436766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.969 kcal (2) G-P(sol) polarization free energy of solvation -64.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds