Wall clock time and date at job start Mon Mar 30 2020 03:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.48022 * 2 1 4 4 N 1.29951 * 126.29121 * 245.05080 * 3 2 1 5 5 O 1.21293 * 110.25189 * 180.02562 * 4 3 2 6 6 C 1.33641 * 109.81516 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.55500 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.02563 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47116 * 59.99536 * 12 10 8 14 14 H 1.48500 * 109.46585 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46730 * 299.99515 * 12 10 8 16 16 N 1.31130 * 106.89473 * 0.22398 * 6 5 4 17 17 C 1.53097 * 109.48699 * 239.97510 * 2 1 3 18 18 C 1.53175 * 109.16300 * 297.61843 * 17 2 1 19 19 C 1.53178 * 109.03450 * 303.02025 * 18 17 2 20 20 C 1.53086 * 109.16487 * 56.98449 * 19 18 17 21 21 O 1.42902 * 109.48358 * 120.02621 * 2 1 3 22 22 H 1.09000 * 109.47730 * 59.99664 * 1 2 3 23 23 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46770 * 299.99386 * 1 2 3 25 25 H 1.09002 * 109.47060 * 30.02527 * 7 6 5 26 26 H 1.09001 * 109.47380 * 150.02615 * 7 6 5 27 27 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 28 28 H 1.09005 * 109.52225 * 57.52722 * 17 2 1 29 29 H 1.08996 * 109.52124 * 177.70722 * 17 2 1 30 30 H 1.09004 * 109.54306 * 183.15423 * 18 17 2 31 31 H 1.08994 * 109.61792 * 62.93211 * 18 17 2 32 32 H 1.09001 * 109.52159 * 297.07622 * 19 18 17 33 33 H 1.09004 * 109.57431 * 176.92025 * 19 18 17 34 34 H 1.09003 * 109.48447 * 182.40734 * 20 19 18 35 35 H 1.08994 * 109.49345 * 62.37369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 7 2.7056 1.9985 -0.9497 5 8 2.9615 3.1445 -0.6456 6 6 2.4614 3.4147 0.5638 7 6 2.5606 4.7236 1.3042 8 6 3.8086 4.7295 2.1490 9 1 4.4640 3.8711 2.1500 10 6 4.1131 5.8302 2.9214 11 7 3.3147 6.8753 2.9205 12 14 5.6604 5.8378 3.9679 13 1 6.8497 5.6724 3.0943 14 1 5.7581 7.1275 4.6975 15 1 5.6035 4.7197 4.9435 16 7 1.8724 2.3217 0.9856 17 6 2.0407 -0.7222 -1.2496 18 6 1.5761 -2.1813 -1.2122 19 6 2.0769 -2.8321 0.0808 20 6 1.5648 -2.0285 1.2789 21 8 2.0066 -0.6741 1.1664 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.6030 5.5440 0.5877 26 1 1.6875 4.8457 1.9451 27 1 3.5287 7.6496 3.4642 28 1 1.6422 -0.2356 -2.1399 29 1 3.1299 -0.6871 -1.2710 30 1 1.9831 -2.7156 -2.0707 31 1 0.4873 -2.2195 -1.2417 32 1 3.1669 -2.8396 0.0864 33 1 1.7053 -3.8549 0.1426 34 1 1.9533 -2.4622 2.2004 35 1 0.4753 -2.0552 1.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235729980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:10 Heat of formation + Delta-G solvation = 6.627317 kcal Electronic energy + Delta-G solvation = -18795.616857 eV Core-core repulsion = 15796.623746 eV Total energy + Delta-G solvation = -2998.993111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.77222 -39.94141 -35.22249 -34.04143 -33.75039 -32.56181 -31.16786 -28.51934 -28.15219 -24.78619 -24.24046 -23.73695 -22.24199 -20.80670 -19.14335 -17.54455 -17.06708 -16.34354 -16.13255 -15.75338 -15.08276 -14.75183 -14.69415 -13.79517 -13.45635 -12.98400 -12.77683 -12.47829 -12.41670 -12.30495 -11.99455 -11.45014 -11.34227 -11.15214 -11.10365 -10.93286 -10.85610 -10.74275 -10.33879 -10.22586 -10.05644 -9.85734 -9.45132 -8.92970 -8.57982 -6.21847 -4.27189 1.91823 2.88853 3.29278 3.32372 3.37107 3.61489 3.84644 4.15921 4.35980 4.58186 4.63649 4.70505 4.80603 4.97066 5.10732 5.19544 5.25214 5.40212 5.46583 5.55703 5.60729 5.70711 5.77699 5.83555 5.98661 6.02352 6.03997 6.27789 6.60480 6.71808 7.14246 7.20894 7.22022 7.72067 7.95347 8.73000 8.95594 9.37510 10.88575 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034451 B = 0.005104 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.554745 B = 5484.061190 C = 5797.329982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.218 3.782 3 C 0.169 3.831 4 N -0.398 5.398 5 O 0.064 5.936 6 C 0.235 3.765 7 C 0.102 3.898 8 C -0.523 4.523 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.906 3.094 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 N -0.490 5.490 17 C -0.137 4.137 18 C -0.121 4.121 19 C -0.158 4.158 20 C 0.058 3.942 21 O -0.359 6.359 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.268 0.732 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -15.613 -6.515 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.177 3.823 3 C -0.104 4.104 4 N -0.111 5.111 5 O 0.007 5.993 6 C 0.017 3.983 7 C 0.063 3.937 8 C -0.562 4.562 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.733 3.267 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 N -0.223 5.223 17 C -0.175 4.175 18 C -0.159 4.159 19 C -0.196 4.196 20 C -0.019 4.019 21 O -0.277 6.277 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.189 -15.992 -6.741 18.114 hybrid contribution 0.768 0.073 0.493 0.915 sum -4.422 -15.919 -6.248 17.663 Atomic orbital electron populations 1.22379 0.93833 1.02837 1.03986 1.19116 0.93054 0.83437 0.86719 1.25031 0.98914 0.98209 0.88269 1.74463 1.18481 0.93522 1.24647 1.85253 1.58240 1.22209 1.33573 1.30223 0.86741 0.99312 0.82007 1.18206 1.00492 0.81175 0.93821 1.20771 1.06498 1.02397 1.26553 0.92085 1.24912 0.97356 0.94936 0.96426 1.69914 1.37180 1.05477 1.40087 0.86413 0.82612 0.77450 0.80238 1.19921 1.20936 1.19914 1.71939 1.24299 0.99582 1.26488 1.22076 1.02557 0.95521 0.97337 1.21636 1.01102 0.95182 0.97946 1.22227 1.02238 0.99540 0.95591 1.22643 0.98964 0.81885 0.98424 1.88106 1.73212 1.24362 1.42006 0.91335 0.90982 0.90466 0.92371 0.91299 0.92242 0.90239 0.90516 0.91167 0.91374 0.90955 0.90787 0.88554 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 7.92 37.16 0.29 -2.00 16 2 C 0.22 3.51 1.07 -91.72 -0.10 3.41 16 3 C 0.17 3.46 6.78 -156.37 -1.06 2.40 16 4 N -0.40 -8.33 11.48 30.90 0.35 -7.97 16 5 O 0.06 1.41 11.31 18.11 0.20 1.62 16 6 C 0.24 5.50 7.70 -13.06 -0.10 5.40 16 7 C 0.10 2.54 5.60 -29.03 -0.16 2.38 16 8 C -0.52 -14.38 9.09 -34.44 -0.31 -14.69 16 9 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 12 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 N -0.49 -11.31 11.55 -9.87 -0.11 -11.42 16 17 C -0.14 -1.83 4.43 -26.59 -0.12 -1.95 16 18 C -0.12 -1.19 5.71 -26.55 -0.15 -1.34 16 19 C -0.16 -1.52 6.14 -26.60 -0.16 -1.69 16 20 C 0.06 0.66 6.51 37.20 0.24 0.91 16 21 O -0.36 -6.04 10.22 -35.23 -0.36 -6.40 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.75 4.98 -51.93 -0.26 0.49 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.07 1.78 8.14 -51.93 -0.42 1.35 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.59 6.62 -51.93 -0.34 0.24 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.56 6.34 -51.93 -0.33 0.23 16 LS Contribution 290.53 15.07 4.38 4.38 Total: -1.00 -30.02 290.53 -6.25 -36.27 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.70 Total: -2.91 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.73 Total: -5.45 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.98 Total: -43.61 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.16 Total: -4.78 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.02 -6.25 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235729980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.898 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds