Wall clock time and date at job start Mon Mar 30 2020 03:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.48022 * 2 1 4 4 N 1.29951 * 126.29121 * 245.05080 * 3 2 1 5 5 O 1.21293 * 110.25189 * 180.02562 * 4 3 2 6 6 C 1.33641 * 109.81516 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.55500 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.02563 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47116 * 59.99536 * 12 10 8 14 14 H 1.48500 * 109.46585 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46730 * 299.99515 * 12 10 8 16 16 N 1.31130 * 106.89473 * 0.22398 * 6 5 4 17 17 C 1.53097 * 109.48699 * 239.97510 * 2 1 3 18 18 C 1.53175 * 109.16300 * 297.61843 * 17 2 1 19 19 C 1.53178 * 109.03450 * 303.02025 * 18 17 2 20 20 C 1.53086 * 109.16487 * 56.98449 * 19 18 17 21 21 O 1.42902 * 109.48358 * 120.02621 * 2 1 3 22 22 H 1.09000 * 109.47730 * 59.99664 * 1 2 3 23 23 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46770 * 299.99386 * 1 2 3 25 25 H 1.09002 * 109.47060 * 30.02527 * 7 6 5 26 26 H 1.09001 * 109.47380 * 150.02615 * 7 6 5 27 27 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 28 28 H 1.09005 * 109.52225 * 57.52722 * 17 2 1 29 29 H 1.08996 * 109.52124 * 177.70722 * 17 2 1 30 30 H 1.09004 * 109.54306 * 183.15423 * 18 17 2 31 31 H 1.08994 * 109.61792 * 62.93211 * 18 17 2 32 32 H 1.09001 * 109.52159 * 297.07622 * 19 18 17 33 33 H 1.09004 * 109.57431 * 176.92025 * 19 18 17 34 34 H 1.09003 * 109.48447 * 182.40734 * 20 19 18 35 35 H 1.08994 * 109.49345 * 62.37369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 7 2.7056 1.9985 -0.9497 5 8 2.9615 3.1445 -0.6456 6 6 2.4614 3.4147 0.5638 7 6 2.5606 4.7236 1.3042 8 6 3.8086 4.7295 2.1490 9 1 4.4640 3.8711 2.1500 10 6 4.1131 5.8302 2.9214 11 7 3.3147 6.8753 2.9205 12 14 5.6604 5.8378 3.9679 13 1 6.8497 5.6724 3.0943 14 1 5.7581 7.1275 4.6975 15 1 5.6035 4.7197 4.9435 16 7 1.8724 2.3217 0.9856 17 6 2.0407 -0.7222 -1.2496 18 6 1.5761 -2.1813 -1.2122 19 6 2.0769 -2.8321 0.0808 20 6 1.5648 -2.0285 1.2789 21 8 2.0066 -0.6741 1.1664 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.6030 5.5440 0.5877 26 1 1.6875 4.8457 1.9451 27 1 3.5287 7.6496 3.4642 28 1 1.6422 -0.2356 -2.1399 29 1 3.1299 -0.6871 -1.2710 30 1 1.9831 -2.7156 -2.0707 31 1 0.4873 -2.2195 -1.2417 32 1 3.1669 -2.8396 0.0864 33 1 1.7053 -3.8549 0.1426 34 1 1.9533 -2.4622 2.2004 35 1 0.4753 -2.0552 1.2958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235729980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:10 Heat of formation + Delta-G solvation = -13.793985 kcal Electronic energy + Delta-G solvation = -18796.502391 eV Core-core repulsion = 15796.623746 eV Total energy + Delta-G solvation = -2999.878645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.49939 -41.01427 -36.89705 -35.86830 -34.84691 -34.14971 -32.63738 -30.38643 -29.22515 -26.20713 -25.89928 -24.97481 -23.80847 -22.25063 -20.18835 -19.34122 -18.63765 -18.33055 -17.29089 -17.15428 -16.72012 -15.94955 -15.76754 -15.20243 -14.77943 -14.46065 -14.20384 -14.06048 -13.69543 -13.34800 -13.24874 -13.11722 -12.96335 -12.65696 -12.61646 -12.36755 -12.17423 -12.06751 -11.95339 -11.82221 -11.78352 -11.21214 -10.79399 -10.68019 -10.45220 -8.31853 -6.45297 0.16550 1.19862 1.43295 1.44739 1.53571 1.96035 2.35341 2.39422 2.80517 3.04196 3.32306 3.59152 3.77445 3.88276 3.99853 4.04035 4.26570 4.40095 4.44142 4.50305 4.67068 4.76199 4.84137 4.86212 4.93771 4.96689 5.01592 5.07498 5.09579 5.15517 5.23920 5.38483 5.57454 5.86814 6.16788 6.58276 7.19090 7.23318 8.78835 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034451 B = 0.005104 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.554745 B = 5484.061190 C = 5797.329982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.210 3.790 3 C 0.171 3.829 4 N -0.399 5.399 5 O 0.055 5.945 6 C 0.228 3.772 7 C 0.111 3.889 8 C -0.547 4.547 9 H 0.049 0.951 10 C 0.024 3.976 11 N -0.914 5.914 12 Si 0.969 3.031 13 H -0.268 1.268 14 H -0.271 1.271 15 H -0.273 1.273 16 N -0.508 5.508 17 C -0.133 4.133 18 C -0.115 4.115 19 C -0.154 4.154 20 C 0.047 3.953 21 O -0.397 6.397 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.274 0.726 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -17.643 -6.700 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.169 3.831 3 C -0.103 4.103 4 N -0.113 5.113 5 O 0.002 5.998 6 C 0.009 3.991 7 C 0.072 3.928 8 C -0.585 4.585 9 H 0.067 0.933 10 C -0.177 4.177 11 N -0.552 5.552 12 Si 0.793 3.207 13 H -0.193 1.193 14 H -0.196 1.196 15 H -0.198 1.198 16 N -0.242 5.242 17 C -0.171 4.171 18 C -0.153 4.153 19 C -0.191 4.191 20 C -0.029 4.029 21 O -0.317 6.317 22 H 0.093 0.907 23 H 0.126 0.874 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.438 -18.015 -6.943 20.058 hybrid contribution 0.814 0.646 0.550 1.175 sum -4.624 -17.369 -6.394 19.077 Atomic orbital electron populations 1.22366 0.91681 1.05008 1.03355 1.19485 0.94562 0.81145 0.87920 1.25999 0.97486 0.99892 0.86910 1.74444 1.18935 0.93032 1.24924 1.85237 1.58499 1.23005 1.33101 1.29848 0.87579 0.99097 0.82579 1.17919 0.99228 0.82119 0.93492 1.20972 1.07362 1.02448 1.27747 0.93264 1.25707 1.00307 0.94359 0.97289 1.69990 1.38617 1.05969 1.40638 0.85440 0.78889 0.77842 0.78565 1.19278 1.19591 1.19842 1.71936 1.24610 1.00034 1.27599 1.22064 1.01133 0.97994 0.95921 1.21670 1.02393 0.92393 0.98802 1.22217 1.01546 1.00868 0.94480 1.22991 1.00257 0.79705 0.99919 1.88038 1.74163 1.27073 1.42389 0.90720 0.87374 0.92338 0.92553 0.92600 0.91714 0.90044 0.92748 0.89285 0.89320 0.92229 0.87498 0.87655 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 7.92 71.98 0.57 -3.55 16 2 C 0.21 6.56 1.07 -11.51 -0.01 6.55 16 3 C 0.17 7.05 6.78 138.46 0.94 7.99 16 4 N -0.40 -16.91 11.48 -60.33 -0.69 -17.60 16 5 O 0.05 2.50 11.31 74.87 0.85 3.34 16 6 C 0.23 10.96 7.70 88.38 0.68 11.65 16 7 C 0.11 5.75 5.60 29.10 0.16 5.92 16 8 C -0.55 -30.70 9.09 25.60 0.23 -30.47 16 9 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 10 C 0.02 1.34 5.46 84.65 0.46 1.80 16 11 N -0.91 -51.60 13.29 21.45 0.28 -51.31 16 12 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 N -0.51 -23.97 11.55 -303.20 -3.50 -27.48 16 17 C -0.13 -3.34 4.43 30.69 0.14 -3.21 16 18 C -0.12 -1.86 5.71 30.71 0.18 -1.68 16 19 C -0.15 -2.46 6.14 30.68 0.19 -2.27 16 20 C 0.05 0.96 6.51 72.01 0.47 1.43 16 21 O -0.40 -13.05 10.22 -148.98 -1.52 -14.57 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.11 1.85 4.98 -2.39 -0.01 1.83 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.10 6.62 -2.39 -0.02 1.08 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.23 6.34 -2.39 -0.02 1.22 16 Total: -1.00 -65.34 290.53 2.53 -62.81 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.09 Total: 5.45 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.00 Total: -5.85 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -3.91 Total: -96.39 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.68 Total: -11.23 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.34 2.53 -62.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235729980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.015 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds