Wall clock time and date at job start Mon Mar 30 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20764 * 120.00265 * 2 1 4 4 C 1.50705 * 119.99780 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47458 * 319.99860 * 4 2 1 6 6 C 1.53001 * 109.46913 * 80.00063 * 4 2 1 7 7 C 1.50706 * 109.46961 * 184.99865 * 6 4 2 8 8 C 1.41370 * 126.79991 * 124.71022 * 7 6 4 9 9 C 1.35459 * 103.98594 * 179.89018 * 8 7 6 10 10 C 1.50691 * 126.77692 * 180.14296 * 9 8 7 11 11 O 1.34042 * 106.44029 * 0.36924 * 9 8 7 12 12 N 1.20914 * 111.57168 * 359.74847 * 11 9 8 13 13 N 1.46500 * 109.47034 * 200.00217 * 4 2 1 14 14 C 1.46504 * 119.99967 * 299.99756 * 13 4 2 15 15 C 1.36934 * 120.00231 * 120.00048 * 13 4 2 16 16 H 1.08007 * 119.99631 * 21.83069 * 15 13 4 17 17 C 1.38817 * 120.00165 * 201.82898 * 15 13 4 18 18 N 1.31611 * 120.00047 * 11.13753 * 17 15 13 19 19 Si 1.86804 * 119.99638 * 191.13821 * 17 15 13 20 20 H 1.48499 * 109.47447 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46929 * 120.00186 * 19 17 15 22 22 H 1.48497 * 109.46708 * 239.99563 * 19 17 15 23 23 H 1.09002 * 109.46971 * 89.99869 * 1 2 3 24 24 H 1.09000 * 109.47396 * 330.00283 * 1 2 3 25 25 H 1.09001 * 109.47662 * 210.00190 * 1 2 3 26 26 H 1.08989 * 109.47166 * 305.00254 * 6 4 2 27 27 H 1.09004 * 109.46530 * 65.00259 * 6 4 2 28 28 H 1.08001 * 128.00754 * 0.02593 * 8 7 6 29 29 H 1.09005 * 109.47286 * 180.29797 * 10 9 8 30 30 H 1.09004 * 109.47508 * 300.29356 * 10 9 8 31 31 H 1.09001 * 109.47712 * 60.29570 * 10 9 8 32 32 H 1.09003 * 109.46781 * 95.10950 * 14 13 4 33 33 H 1.09000 * 109.47176 * 215.10914 * 14 13 4 34 34 H 1.08997 * 109.47489 * 335.11590 * 14 13 4 35 35 H 0.97001 * 120.00141 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.7604 -2.0131 0.6614 6 6 2.2984 -1.8727 -1.4198 7 6 2.9435 -3.2346 -1.3995 8 6 2.3925 -4.4400 -1.8913 9 6 3.3518 -5.3636 -1.6432 10 6 3.2943 -6.8339 -1.9685 11 8 4.3602 -4.7124 -1.0468 12 7 4.1161 -3.5350 -0.9204 13 7 3.6286 -1.0790 0.4729 14 6 4.5113 -0.1611 -0.2514 15 6 4.0825 -1.7254 1.5915 16 1 3.6031 -2.6354 1.9211 17 6 5.1588 -1.2113 2.3016 18 7 5.6033 -0.0009 2.0380 19 14 5.9762 -2.2376 3.6313 20 1 5.2927 -3.5521 3.7325 21 1 7.4052 -2.4474 3.2863 22 1 5.8801 -1.5288 4.9327 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 0.8900 0.5138 25 1 -0.3634 -0.8899 0.5138 26 1 1.2822 -1.9577 -1.8044 27 1 2.8754 -1.2069 -2.0616 28 1 1.4305 -4.5894 -2.3588 29 1 4.2162 -7.3148 -1.6413 30 1 2.4462 -7.2868 -1.4547 31 1 3.1787 -6.9638 -3.0445 32 1 4.4680 0.8252 0.2108 33 1 5.5343 -0.5353 -0.2140 34 1 4.1882 -0.0900 -1.2900 35 1 6.3556 0.3582 2.5340 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259346884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:09 Heat of formation + Delta-G solvation = 53.381411 kcal Electronic energy + Delta-G solvation = -19263.057679 eV Core-core repulsion = 16266.091977 eV Total energy + Delta-G solvation = -2996.965701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.35021 -38.86741 -35.73526 -33.94147 -33.02801 -31.55992 -30.04741 -28.39862 -27.46006 -25.84693 -24.61247 -22.57312 -21.48404 -19.57651 -18.29443 -17.10051 -16.74041 -16.67128 -15.20115 -15.00761 -14.60102 -14.03941 -13.95617 -13.60401 -13.34504 -13.19074 -12.79908 -12.51894 -12.37099 -12.03509 -11.98103 -11.54302 -11.34119 -10.95563 -10.76698 -10.67532 -10.30785 -10.26110 -9.91989 -9.76867 -9.44227 -8.93371 -8.79852 -8.31534 -6.60022 -5.57190 -3.02509 1.96940 2.68799 2.90536 3.45852 3.52005 3.54369 3.59311 4.54673 4.67140 4.78571 4.92606 5.29554 5.35068 5.39852 5.50627 5.55449 5.56781 5.67034 5.69396 5.82953 5.88173 5.92754 5.98953 6.12101 6.28591 6.38385 6.57626 6.62528 7.01867 7.63450 7.90992 8.09330 8.33628 8.55102 8.98734 9.35361 9.96779 10.45071 11.46316 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.010475 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.771403 B = 2672.409566 C = 4125.984214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.327 3.673 3 O -0.440 6.440 4 C 0.136 3.864 5 H 0.086 0.914 6 C -0.053 4.053 7 C 0.021 3.979 8 C -0.237 4.237 9 C -0.061 4.061 10 C -0.069 4.069 11 O 0.101 5.899 12 N -0.299 5.299 13 N -0.568 5.568 14 C 0.178 3.822 15 C -0.237 4.237 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.293 1.293 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.039 0.961 34 H -0.011 1.011 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -10.458 -9.311 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.198 3.802 3 O -0.311 6.311 4 C 0.024 3.976 5 H 0.104 0.896 6 C -0.093 4.093 7 C -0.138 4.138 8 C -0.259 4.259 9 C -0.125 4.125 10 C -0.126 4.126 11 O 0.029 5.971 12 N 0.002 4.998 13 N -0.288 5.288 14 C 0.034 3.966 15 C -0.366 4.366 16 H 0.080 0.920 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.220 1.220 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.331 -9.062 -8.620 15.027 hybrid contribution -0.437 -0.779 0.450 1.000 sum -8.768 -9.840 -8.170 15.507 Atomic orbital electron populations 1.22402 0.96765 1.03833 1.03374 1.25964 0.90782 0.92471 0.71010 1.90373 1.71702 1.35043 1.33996 1.20808 0.88990 0.93849 0.93944 0.89571 1.20455 0.98967 0.90063 0.99849 1.23251 0.92456 0.97384 1.00727 1.22297 1.02233 0.91953 1.09412 1.24408 0.90001 0.97487 1.00563 1.20208 1.03936 0.86162 1.02317 1.84991 1.38403 1.15782 1.57891 1.74297 1.17480 0.92197 1.15820 1.43733 1.04931 1.50828 1.29288 1.20729 0.92658 0.94071 0.89188 1.19050 1.13268 1.02444 1.01886 0.91979 1.24982 1.00509 0.95670 0.98348 1.70123 1.27457 1.14397 1.42746 0.86201 0.79480 0.79504 0.81461 1.20473 1.21641 1.21995 0.89633 0.90789 0.90379 0.90393 0.90100 0.82047 0.90325 0.89870 0.89914 0.94238 0.94181 0.99251 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.80 10.25 36.00 0.37 -2.43 16 2 C 0.33 6.40 6.48 -29.04 -0.19 6.21 16 3 O -0.44 -10.60 15.29 6.00 0.09 -10.51 16 4 C 0.14 2.80 2.42 -69.08 -0.17 2.64 16 5 H 0.09 1.73 7.86 -51.93 -0.41 1.32 16 6 C -0.05 -0.91 5.22 -27.88 -0.15 -1.06 16 7 C 0.02 0.39 6.55 -82.10 -0.54 -0.15 16 8 C -0.24 -3.35 11.05 -39.38 -0.44 -3.79 16 9 C -0.06 -0.85 7.49 -35.30 -0.26 -1.12 16 10 C -0.07 -0.59 10.45 36.00 0.38 -0.22 16 11 O 0.10 1.86 11.20 17.17 0.19 2.06 16 12 N -0.30 -6.37 10.70 33.42 0.36 -6.02 16 13 N -0.57 -14.81 1.91 -174.80 -0.33 -15.15 16 14 C 0.18 4.84 7.30 59.85 0.44 5.28 16 15 C -0.24 -6.75 8.99 -15.06 -0.14 -6.88 16 16 H 0.06 1.76 7.80 -52.48 -0.41 1.35 16 17 C 0.00 0.09 5.14 -17.43 -0.09 0.00 16 18 N -0.90 -27.99 10.54 55.49 0.58 -27.40 16 19 Si 0.90 23.19 29.57 -169.99 -5.03 18.16 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.50 6.49 -51.93 -0.34 1.16 16 28 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 1.20 6.68 -51.93 -0.35 0.85 16 33 H 0.04 1.18 7.21 -51.93 -0.37 0.80 16 34 H -0.01 -0.27 6.36 -51.93 -0.33 -0.60 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -35.54 297.60 -5.15 -40.69 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -4.72 Total: -4.81 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.78 Total: -1.50 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.61 Total: -48.57 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.28 Total: -8.46 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.03 Total: 18.16 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.54 -5.15 -40.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.070 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds