Wall clock time and date at job start Mon Mar 30 2020 04:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34477 * 126.16680 * 2 1 4 4 C 1.30251 * 108.69937 * 180.16284 * 3 2 1 5 5 C 1.50704 * 125.61799 * 179.83510 * 4 3 2 6 6 C 1.50703 * 109.46930 * 89.70129 * 5 4 3 7 7 O 1.21290 * 119.99977 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00516 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00694 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.46342 * 324.99575 * 9 8 6 11 11 C 1.52998 * 109.47185 * 84.99510 * 9 8 6 12 12 C 1.50701 * 109.47260 * 204.99997 * 9 8 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.33965 * 108.76216 * 359.58273 * 4 3 2 21 21 C 1.34327 * 126.16079 * 179.69863 * 2 1 3 22 22 C 1.50692 * 126.45014 * 0.02679 * 21 2 1 23 23 H 1.08992 * 109.47105 * 270.30016 * 1 2 3 24 24 H 1.09000 * 109.46591 * 30.29966 * 1 2 3 25 25 H 1.09000 * 109.47116 * 150.29338 * 1 2 3 26 26 H 1.09003 * 109.47417 * 329.70537 * 5 4 3 27 27 H 1.08994 * 109.47506 * 209.69417 * 5 4 3 28 28 H 0.97006 * 119.99365 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 30 30 H 1.09005 * 109.46870 * 300.00240 * 11 9 8 31 31 H 1.08998 * 109.47156 * 60.00179 * 11 9 8 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 33 33 H 1.08995 * 109.47708 * 179.97438 * 22 21 2 34 34 H 1.09004 * 109.47161 * 299.99838 * 22 21 2 35 35 H 1.08995 * 109.47250 * 59.99378 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3007 1.0856 0.0000 4 6 3.5431 0.6947 -0.0035 5 6 4.7480 1.5998 -0.0083 6 6 5.1496 1.9090 1.4110 7 8 4.5192 1.4408 2.3353 8 7 6.2087 2.7065 1.6532 9 6 6.5995 3.0066 3.0328 10 1 5.7078 3.0765 3.6559 11 6 7.5044 1.8915 3.5606 12 6 7.3427 4.3170 3.0707 13 1 7.5079 4.8707 2.1583 14 6 7.8173 4.8059 4.2693 15 7 7.6165 4.1315 5.3804 16 14 8.7454 6.4264 4.3152 17 1 8.8370 6.9834 2.9417 18 1 8.0250 7.3848 5.1915 19 1 10.1124 6.1991 4.8488 20 8 3.5734 -0.6446 0.0034 21 6 2.2997 -1.0845 0.0057 22 6 1.8493 -2.5225 0.0127 23 1 -0.3633 0.0054 1.0276 24 1 -0.3632 0.8873 -0.5185 25 1 -0.3633 -0.8926 -0.5093 26 1 4.5040 2.5270 -0.5269 27 1 5.5731 1.1039 -0.5194 28 1 6.7127 3.0813 0.9139 29 1 7.7948 2.1146 4.5873 30 1 6.9667 0.9437 3.5332 31 1 8.3960 1.8216 2.9375 32 1 7.9507 4.4753 6.2236 33 1 2.7213 -3.1764 0.0158 34 1 1.2500 -2.7113 0.9035 35 1 1.2506 -2.7201 -0.8764 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:59 Heat of formation + Delta-G solvation = -30.350328 kcal Electronic energy + Delta-G solvation = -18153.683305 eV Core-core repulsion = 15153.086723 eV Total energy + Delta-G solvation = -3000.596582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.19768 -38.89272 -35.04303 -34.88608 -33.43406 -32.43178 -30.69587 -29.18973 -28.44172 -25.27939 -24.82796 -22.06361 -21.20413 -20.39219 -19.47548 -17.46797 -16.63050 -16.31848 -15.63383 -15.27507 -14.80414 -14.48451 -14.01109 -13.78176 -13.40364 -13.13717 -13.01157 -12.88241 -12.54026 -12.41299 -12.23717 -11.92539 -11.62101 -11.09898 -10.95482 -10.78022 -10.74337 -10.31859 -10.31223 -10.24733 -9.21263 -9.05365 -8.56772 -8.37127 -7.96450 -6.12862 -4.22384 1.53928 2.69193 2.80802 3.23833 3.28852 3.31892 3.34548 3.93779 4.19657 4.39061 4.73447 4.85301 5.02071 5.19460 5.22335 5.27557 5.32398 5.42561 5.52470 5.55884 5.68596 5.75982 6.08407 6.19002 6.45260 6.81170 6.94625 7.13392 7.41572 7.53126 7.67732 7.89734 7.91267 8.13546 8.59867 8.75812 9.05647 9.45031 10.93221 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.046449 B = 0.004120 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.668156 B = 6794.896885 C = 6917.685711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.016 4.016 3 N -0.472 5.472 4 C 0.225 3.775 5 C -0.050 4.050 6 C 0.506 3.494 7 O -0.544 6.544 8 N -0.705 5.705 9 C 0.264 3.736 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 O -0.196 6.196 21 C -0.059 4.059 22 C -0.063 4.063 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.391 0.609 29 H 0.091 0.909 30 H 0.014 0.986 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 -9.495 -12.844 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 N -0.201 5.201 4 C 0.017 3.983 5 C -0.091 4.091 6 C 0.288 3.712 7 O -0.422 6.422 8 N -0.353 5.353 9 C 0.162 3.838 10 H 0.067 0.933 11 C -0.206 4.206 12 C -0.572 4.572 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 O -0.083 6.083 21 C -0.112 4.112 22 C -0.120 4.120 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.223 0.777 29 H 0.109 0.891 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.850 -9.204 -11.941 17.482 hybrid contribution 1.082 0.399 -0.185 1.168 sum -7.768 -8.804 -12.126 16.879 Atomic orbital electron populations 1.20067 0.86731 1.02883 1.02794 1.21476 0.97835 0.87813 1.06452 1.70293 1.00391 1.31207 1.18227 1.25169 0.94656 0.78822 0.99634 1.20163 0.92010 0.98085 0.98857 1.19955 0.81610 0.80293 0.89305 1.90715 1.53605 1.52332 1.45580 1.46457 1.29255 1.47786 1.11798 1.18789 0.95216 0.93371 0.76382 0.93296 1.22082 0.98195 0.96296 1.04014 1.21248 1.36745 1.04916 0.94274 0.91885 1.24896 0.95863 0.97653 0.95340 1.69913 1.45458 1.38197 0.98519 0.86376 0.79367 0.83060 0.78187 1.19690 1.20863 1.20887 1.84351 1.30085 1.24013 1.69885 1.23078 0.80927 0.98119 1.09032 1.20200 1.01736 0.86605 1.03412 0.90787 0.90738 0.91028 0.85125 0.86459 0.77665 0.89070 0.96697 0.95369 0.92606 0.90509 0.89562 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.22 36.01 0.37 -0.36 16 2 C -0.02 -0.24 7.11 -82.81 -0.59 -0.83 16 3 N -0.47 -8.53 11.29 -7.36 -0.08 -8.61 16 4 C 0.22 3.90 6.84 -12.95 -0.09 3.81 16 5 C -0.05 -0.74 6.33 -29.03 -0.18 -0.93 16 6 C 0.51 10.26 7.79 -10.99 -0.09 10.18 16 7 O -0.54 -13.75 15.70 5.55 0.09 -13.67 16 8 N -0.70 -14.49 5.07 -54.93 -0.28 -14.77 16 9 C 0.26 6.76 2.56 -69.08 -0.18 6.58 16 10 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 11 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 12 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -25.03 11.31 55.43 0.63 -24.40 16 16 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 O -0.20 -3.30 10.78 5.36 0.06 -3.25 16 21 C -0.06 -0.84 7.39 -35.69 -0.26 -1.10 16 22 C -0.06 -0.56 9.96 36.00 0.36 -0.20 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 26 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.39 6.64 8.54 -40.82 -0.35 6.29 16 29 H 0.09 2.48 6.06 -51.93 -0.31 2.17 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -34.61 305.86 -5.53 -40.13 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.81 Total: 3.27 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.71 Total: 1.08 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.27 Total: -47.78 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.14 Total: -16.91 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.61 -5.53 -40.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.783 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds