Wall clock time and date at job start Mon Mar 30 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33461 * 126.08386 * 2 1 4 4 C 1.31278 * 108.70984 * 180.26794 * 3 2 1 5 5 C 1.47458 * 125.70761 * 179.75293 * 4 3 2 6 6 O 1.21600 * 120.00246 * 172.71461 * 5 4 3 7 7 N 1.34776 * 119.99967 * 352.72191 * 5 4 3 8 8 C 1.46505 * 120.00179 * 3.50391 * 7 5 4 9 9 C 1.46496 * 120.00224 * 183.50611 * 7 5 4 10 10 H 1.08999 * 109.47022 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47393 * 240.00011 * 9 7 5 12 12 C 1.50697 * 109.47447 * 120.00034 * 9 7 5 13 13 H 1.08003 * 119.99946 * 359.97438 * 12 9 7 14 14 C 1.37874 * 120.00484 * 180.02562 * 12 9 7 15 15 N 1.31520 * 119.99665 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00318 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47127 * 59.99940 * 16 14 12 18 18 H 1.48496 * 109.47268 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47035 * 299.99870 * 16 14 12 20 20 O 1.34551 * 108.58874 * 359.72921 * 4 3 2 21 21 C 1.34310 * 107.65145 * 0.02562 * 20 4 3 22 22 C 1.50701 * 126.39184 * 179.97438 * 21 20 4 23 23 H 1.09000 * 109.47624 * 270.19015 * 1 2 3 24 24 H 1.08998 * 109.47275 * 30.19412 * 1 2 3 25 25 H 1.09008 * 109.46878 * 150.18794 * 1 2 3 26 26 H 1.09005 * 109.46735 * 83.95035 * 8 7 5 27 27 H 1.08990 * 109.47379 * 203.95430 * 8 7 5 28 28 H 1.08996 * 109.46771 * 323.95960 * 8 7 5 29 29 H 1.09000 * 109.47056 * 179.97438 * 11 9 7 30 30 H 1.08999 * 109.47017 * 300.00149 * 11 9 7 31 31 H 1.08999 * 109.47447 * 59.99667 * 11 9 7 32 32 H 0.96998 * 119.99395 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.46992 * 0.02648 * 22 21 20 34 34 H 1.08996 * 109.46556 * 120.02617 * 22 21 20 35 35 H 1.08998 * 109.47014 * 240.02722 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2930 1.0786 0.0000 4 6 3.5458 0.6866 -0.0058 5 6 4.7247 1.5723 -0.0130 6 8 5.8390 1.1026 0.1155 7 7 4.5673 2.9025 -0.1619 8 6 3.2217 3.4768 -0.2395 9 6 5.7416 3.7743 -0.2461 10 1 6.6471 3.1724 -0.1696 11 6 5.7064 4.7895 0.8981 12 6 5.7324 4.5035 -1.5649 13 1 4.9321 4.3341 -2.2701 14 6 6.7462 5.3860 -1.8719 15 7 7.7211 5.5919 -1.0134 16 14 6.7352 6.2893 -3.5069 17 1 5.5018 7.1096 -3.6109 18 1 7.9255 7.1730 -3.5923 19 1 6.7693 5.3036 -4.6171 20 8 3.5744 -0.6586 -0.0036 21 6 2.3035 -1.0929 0.0032 22 6 1.8497 -2.5300 0.0073 23 1 -0.3634 0.0034 1.0276 24 1 -0.3634 0.8882 -0.5168 25 1 -0.3633 -0.8917 -0.5110 26 1 2.8346 3.6327 0.7675 27 1 3.2636 4.4310 -0.7645 28 1 2.5658 2.7937 -0.7791 29 1 6.5804 5.4378 0.8356 30 1 4.8008 5.3914 0.8220 31 1 5.7130 4.2622 1.8520 32 1 8.4342 6.2131 -1.2293 33 1 2.7203 -3.1859 0.0044 34 1 1.2543 -2.7203 0.9002 35 1 1.2464 -2.7230 -0.8797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259564679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:47 Heat of formation + Delta-G solvation = -3.737219 kcal Electronic energy + Delta-G solvation = -18760.484645 eV Core-core repulsion = 15761.042094 eV Total energy + Delta-G solvation = -2999.442551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.33875 -38.95777 -35.73807 -35.01480 -33.35275 -32.55038 -29.76511 -29.08947 -26.67956 -25.98341 -25.23189 -23.11957 -21.67552 -20.49560 -19.02687 -16.94463 -16.88882 -16.28211 -16.10722 -15.31995 -14.44218 -14.41531 -14.07469 -13.55830 -13.43583 -13.18904 -13.00518 -12.63188 -12.57304 -12.30217 -12.17628 -11.75909 -11.58865 -11.10425 -10.99418 -10.83356 -10.72696 -10.31031 -10.18710 -9.98816 -9.48807 -9.20735 -8.58219 -8.45578 -7.69554 -6.09775 -4.18212 1.11471 2.35311 2.43199 3.28761 3.33450 3.35678 3.65547 3.74502 4.31335 4.43151 4.64997 4.73669 5.03683 5.16434 5.21663 5.31048 5.46879 5.47093 5.64114 5.85575 6.00386 6.11395 6.21916 6.29753 6.65503 6.76568 6.84587 7.01124 7.29229 7.42389 7.66438 7.67326 7.96850 8.11426 8.36574 8.67295 8.88419 9.47756 10.95738 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.005356 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.331616 B = 5226.057077 C = 5385.903976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.023 4.023 3 N -0.435 5.435 4 C 0.165 3.835 5 C 0.592 3.408 6 O -0.531 6.531 7 N -0.554 5.554 8 C 0.074 3.926 9 C 0.259 3.741 10 H 0.066 0.934 11 C -0.146 4.146 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 O -0.168 6.168 21 C -0.045 4.045 22 C -0.066 4.066 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 -10.535 2.236 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.146 4.146 3 N -0.169 5.169 4 C -0.041 4.041 5 C 0.374 3.626 6 O -0.408 6.408 7 N -0.285 5.285 8 C -0.070 4.070 9 C 0.160 3.840 10 H 0.084 0.916 11 C -0.205 4.205 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 O -0.051 6.051 21 C -0.100 4.100 22 C -0.123 4.123 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.742 -10.019 2.330 17.166 hybrid contribution 0.145 -0.139 -0.855 0.879 sum -13.597 -10.158 1.475 17.037 Atomic orbital electron populations 1.20086 0.86187 1.03328 1.02804 1.21746 0.98190 0.87821 1.06836 1.70620 1.00130 1.30336 1.15823 1.26066 0.94478 0.79373 1.04171 1.16216 0.84011 0.82181 0.80160 1.90828 1.23679 1.74763 1.51480 1.48092 1.10249 1.03905 1.66285 1.22105 0.82836 1.00585 1.01426 1.19165 0.82451 0.87372 0.95009 0.91574 1.22092 1.02902 1.00085 0.95373 1.21253 1.09457 1.24706 1.01355 0.91999 1.24882 0.95007 0.96455 0.97296 1.69873 1.11564 1.35915 1.35093 0.86492 0.77498 0.79473 0.83567 1.20130 1.21117 1.20207 1.84470 1.29500 1.23168 1.67957 1.23639 0.81094 0.98506 1.06731 1.20279 1.01980 0.86272 1.03722 0.90734 0.90388 0.90882 0.93504 0.90313 0.89463 0.88493 0.94784 0.96761 0.92502 0.90185 0.89265 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.22 36.00 0.37 -0.24 16 2 C -0.02 -0.31 7.10 -82.96 -0.59 -0.90 16 3 N -0.44 -7.54 7.71 -8.03 -0.06 -7.60 16 4 C 0.17 3.28 7.81 -14.03 -0.11 3.17 16 5 C 0.59 13.78 7.67 -12.51 -0.10 13.68 16 6 O -0.53 -14.00 16.44 0.15 0.00 -14.00 16 7 N -0.55 -12.76 2.75 -176.53 -0.49 -13.24 16 8 C 0.07 1.42 8.52 59.85 0.51 1.93 16 9 C 0.26 6.75 2.63 -69.09 -0.18 6.57 16 10 H 0.07 1.96 6.90 -51.93 -0.36 1.60 16 11 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 12 C -0.53 -14.40 7.95 -34.44 -0.27 -14.67 16 13 H 0.06 1.66 7.44 -52.48 -0.39 1.27 16 14 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 15 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 16 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 O -0.17 -3.05 10.79 -0.11 0.00 -3.05 16 21 C -0.04 -0.61 7.40 -35.37 -0.26 -0.87 16 22 C -0.07 -0.53 9.97 36.01 0.36 -0.17 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.47 7.90 -51.92 -0.41 0.06 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.53 7.12 -51.93 -0.37 1.16 16 28 H 0.09 1.59 5.36 -51.93 -0.28 1.31 16 29 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 30 H 0.03 0.76 7.67 -51.93 -0.40 0.36 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 297.17 15.07 4.48 4.48 Total: -1.00 -31.87 297.17 -5.11 -36.98 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.61 Total: -2.25 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.04 Total: 7.01 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.08 Total: -45.17 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.00 Total: -17.05 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.87 -5.11 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.242 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds