Wall clock time and date at job start Mon Mar 30 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33461 * 126.08386 * 2 1 4 4 C 1.31278 * 108.70984 * 180.26794 * 3 2 1 5 5 C 1.47458 * 125.70761 * 179.75293 * 4 3 2 6 6 O 1.21600 * 120.00246 * 172.71461 * 5 4 3 7 7 N 1.34776 * 119.99967 * 352.72191 * 5 4 3 8 8 C 1.46505 * 120.00179 * 3.50391 * 7 5 4 9 9 C 1.46496 * 120.00224 * 183.50611 * 7 5 4 10 10 H 1.08999 * 109.47022 * 359.97438 * 9 7 5 11 11 C 1.53001 * 109.47393 * 240.00011 * 9 7 5 12 12 C 1.50697 * 109.47447 * 120.00034 * 9 7 5 13 13 H 1.08003 * 119.99946 * 359.97438 * 12 9 7 14 14 C 1.37874 * 120.00484 * 180.02562 * 12 9 7 15 15 N 1.31520 * 119.99665 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00318 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47127 * 59.99940 * 16 14 12 18 18 H 1.48496 * 109.47268 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47035 * 299.99870 * 16 14 12 20 20 O 1.34551 * 108.58874 * 359.72921 * 4 3 2 21 21 C 1.34310 * 107.65145 * 0.02562 * 20 4 3 22 22 C 1.50701 * 126.39184 * 179.97438 * 21 20 4 23 23 H 1.09000 * 109.47624 * 270.19015 * 1 2 3 24 24 H 1.08998 * 109.47275 * 30.19412 * 1 2 3 25 25 H 1.09008 * 109.46878 * 150.18794 * 1 2 3 26 26 H 1.09005 * 109.46735 * 83.95035 * 8 7 5 27 27 H 1.08990 * 109.47379 * 203.95430 * 8 7 5 28 28 H 1.08996 * 109.46771 * 323.95960 * 8 7 5 29 29 H 1.09000 * 109.47056 * 179.97438 * 11 9 7 30 30 H 1.08999 * 109.47017 * 300.00149 * 11 9 7 31 31 H 1.08999 * 109.47447 * 59.99667 * 11 9 7 32 32 H 0.96998 * 119.99395 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.46992 * 0.02648 * 22 21 20 34 34 H 1.08996 * 109.46556 * 120.02617 * 22 21 20 35 35 H 1.08998 * 109.47014 * 240.02722 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2930 1.0786 0.0000 4 6 3.5458 0.6866 -0.0058 5 6 4.7247 1.5723 -0.0130 6 8 5.8390 1.1026 0.1155 7 7 4.5673 2.9025 -0.1619 8 6 3.2217 3.4768 -0.2395 9 6 5.7416 3.7743 -0.2461 10 1 6.6471 3.1724 -0.1696 11 6 5.7064 4.7895 0.8981 12 6 5.7324 4.5035 -1.5649 13 1 4.9321 4.3341 -2.2701 14 6 6.7462 5.3860 -1.8719 15 7 7.7211 5.5919 -1.0134 16 14 6.7352 6.2893 -3.5069 17 1 5.5018 7.1096 -3.6109 18 1 7.9255 7.1730 -3.5923 19 1 6.7693 5.3036 -4.6171 20 8 3.5744 -0.6586 -0.0036 21 6 2.3035 -1.0929 0.0032 22 6 1.8497 -2.5300 0.0073 23 1 -0.3634 0.0034 1.0276 24 1 -0.3634 0.8882 -0.5168 25 1 -0.3633 -0.8917 -0.5110 26 1 2.8346 3.6327 0.7675 27 1 3.2636 4.4310 -0.7645 28 1 2.5658 2.7937 -0.7791 29 1 6.5804 5.4378 0.8356 30 1 4.8008 5.3914 0.8220 31 1 5.7130 4.2622 1.8520 32 1 8.4342 6.2131 -1.2293 33 1 2.7203 -3.1859 0.0044 34 1 1.2543 -2.7203 0.9002 35 1 1.2464 -2.7230 -0.8797 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259564679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:47 Heat of formation + Delta-G solvation = -25.928373 kcal Electronic energy + Delta-G solvation = -18761.446926 eV Core-core repulsion = 15761.042094 eV Total energy + Delta-G solvation = -3000.404832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.60926 -40.76950 -37.48190 -36.44366 -34.97310 -33.96775 -31.52620 -30.02475 -28.09349 -27.50896 -27.30217 -24.45100 -23.19306 -21.87959 -20.72645 -18.71119 -18.32792 -18.04978 -17.73895 -16.96857 -16.21050 -16.12274 -15.09725 -15.01482 -14.50606 -14.28987 -14.22193 -13.98774 -13.79918 -13.62018 -13.49456 -13.15624 -13.02683 -12.89439 -12.77985 -12.72945 -12.25177 -12.16300 -12.12053 -11.54010 -11.25305 -11.15711 -10.55227 -9.77935 -9.47038 -8.17744 -6.34923 -0.24944 1.03432 1.15994 1.43301 1.45548 1.53472 1.99859 2.34277 2.46331 2.89132 3.10816 3.62114 3.71061 4.17489 4.32897 4.49888 4.66195 4.70212 4.70762 4.76562 4.83163 4.86879 4.88275 4.97213 4.99248 5.06874 5.18727 5.38428 5.39942 5.49123 5.59596 5.91645 6.07053 6.33506 6.52651 6.69162 6.97412 7.35784 8.87323 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.005356 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.331616 B = 5226.057077 C = 5385.903976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.036 4.036 3 N -0.425 5.425 4 C 0.115 3.885 5 C 0.588 3.412 6 O -0.582 6.582 7 N -0.561 5.561 8 C 0.080 3.920 9 C 0.262 3.738 10 H 0.017 0.983 11 C -0.132 4.132 12 C -0.545 4.545 13 H 0.062 0.938 14 C 0.019 3.981 15 N -0.914 5.914 16 Si 0.970 3.030 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.278 1.278 20 O -0.189 6.189 21 C -0.026 4.026 22 C -0.068 4.068 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.750 -11.470 1.601 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.161 4.161 3 N -0.161 5.161 4 C -0.088 4.088 5 C 0.373 3.627 6 O -0.463 6.463 7 N -0.291 5.291 8 C -0.061 4.061 9 C 0.161 3.839 10 H 0.035 0.965 11 C -0.190 4.190 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.553 5.553 16 Si 0.794 3.206 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.203 1.203 20 O -0.073 6.073 21 C -0.081 4.081 22 C -0.124 4.124 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.139 0.861 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.061 -10.947 1.702 20.342 hybrid contribution 1.029 -0.038 -0.618 1.201 sum -16.032 -10.985 1.084 19.464 Atomic orbital electron populations 1.20307 0.82324 1.05025 1.04389 1.22603 1.00291 0.86673 1.06493 1.70509 0.99412 1.31982 1.14179 1.24947 0.93906 0.79843 1.10075 1.16544 0.84677 0.82522 0.79005 1.90770 1.26040 1.75723 1.53721 1.48032 1.10742 1.04005 1.66292 1.22207 0.81047 1.00361 1.02533 1.18838 0.82182 0.87191 0.95647 0.96468 1.21888 1.02640 0.99422 0.95056 1.21467 1.09857 1.25110 1.01884 0.91973 1.25731 0.94440 0.97140 1.00785 1.70008 1.12051 1.36339 1.36861 0.85435 0.78098 0.78183 0.78863 1.18599 1.20592 1.20324 1.84452 1.32173 1.22521 1.68134 1.24930 0.79355 1.01095 1.02680 1.20702 1.02797 0.82222 1.06640 0.89064 0.90454 0.87497 0.91891 0.90615 0.88305 0.90556 0.93148 0.96016 0.92343 0.90012 0.86079 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.22 71.23 0.73 -0.13 16 2 C -0.04 -0.89 7.10 41.62 0.30 -0.60 16 3 N -0.43 -14.29 7.71 -293.29 -2.26 -16.55 16 4 C 0.12 4.66 7.81 87.21 0.68 5.34 16 5 C 0.59 28.78 7.67 86.67 0.66 29.45 16 6 O -0.58 -32.98 16.44 0.87 0.01 -32.97 16 7 N -0.56 -26.75 2.75 -830.66 -2.29 -29.04 16 8 C 0.08 3.07 8.52 127.77 1.09 4.16 16 9 C 0.26 14.28 2.63 44.25 0.12 14.40 16 10 H 0.02 1.10 6.90 -2.39 -0.02 1.09 16 11 C -0.13 -6.56 8.97 71.98 0.65 -5.92 16 12 C -0.54 -30.37 7.95 25.60 0.20 -30.16 16 13 H 0.06 3.38 7.44 -2.91 -0.02 3.35 16 14 C 0.02 1.06 5.30 84.65 0.45 1.51 16 15 N -0.91 -52.79 11.32 21.45 0.24 -52.54 16 16 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 17 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 O -0.19 -6.89 10.79 -0.08 0.00 -6.89 16 21 C -0.03 -0.63 7.40 24.99 0.18 -0.45 16 22 C -0.07 -0.77 9.97 71.24 0.71 -0.06 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 0.75 7.90 -2.38 -0.02 0.73 16 26 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.08 2.92 7.12 -2.39 -0.02 2.90 16 28 H 0.10 3.55 5.36 -2.39 -0.01 3.53 16 29 H 0.08 4.13 6.07 -2.39 -0.01 4.12 16 30 H 0.05 2.28 7.67 -2.39 -0.02 2.27 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.85 297.17 4.60 -69.25 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.09 Total: 5.89 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.77 Total: 17.54 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.31 Total: -98.13 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: 0.01 Total: -39.86 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -73.85 4.60 -69.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.327 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds