Wall clock time and date at job start Mon Mar 30 2020 04:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00441 * 2 1 4 4 O 1.21278 * 120.00579 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99676 * 0.02562 * 3 2 1 6 6 C 1.50706 * 109.47221 * 179.97438 * 5 3 2 7 7 C 1.34326 * 126.16563 * 124.97665 * 6 5 3 8 8 O 1.34756 * 107.11171 * 179.80990 * 7 6 5 9 9 C 1.33963 * 107.75312 * 0.36310 * 8 7 6 10 10 N 1.30257 * 108.76337 * 359.63072 * 9 8 7 11 11 C 1.46506 * 119.99933 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46881 * 354.61996 * 11 2 1 13 13 C 1.52999 * 109.47041 * 114.61531 * 11 2 1 14 14 C 1.50698 * 109.47157 * 234.61889 * 11 2 1 15 15 H 1.08001 * 119.99851 * 1.53667 * 14 11 2 16 16 C 1.37876 * 119.99745 * 181.52985 * 14 11 2 17 17 N 1.31514 * 120.00173 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 119.99780 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47154 * 60.00334 * 18 16 14 20 20 H 1.48502 * 109.47304 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47577 * 300.00482 * 18 16 14 22 22 H 1.08998 * 109.47250 * 90.91446 * 1 2 3 23 23 H 1.09003 * 109.47252 * 210.91623 * 1 2 3 24 24 H 1.09003 * 109.46700 * 330.91146 * 1 2 3 25 25 H 1.09002 * 109.47931 * 59.99526 * 5 3 2 26 26 H 1.09006 * 109.46713 * 299.99405 * 5 3 2 27 27 H 1.08001 * 126.44430 * 0.06484 * 7 6 5 28 28 H 1.08000 * 125.62164 * 179.88943 * 9 8 7 29 29 H 1.09000 * 109.47095 * 60.00059 * 12 11 2 30 30 H 1.09005 * 109.46856 * 179.97438 * 12 11 2 31 31 H 1.08996 * 109.46977 * 299.99885 * 12 11 2 32 32 H 1.09004 * 109.46937 * 60.00087 * 13 11 2 33 33 H 1.09005 * 109.47271 * 180.02562 * 13 11 2 34 34 H 1.09000 * 109.47604 * 300.00350 * 13 11 2 35 35 H 0.97003 * 120.00145 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 0.0006 6 6 2.3648 3.6177 0.0011 7 6 2.4074 4.6246 -0.8870 8 8 3.4242 5.4309 -0.5237 9 6 3.9914 4.9055 0.5702 10 7 3.3540 3.8156 0.8903 11 6 2.1975 -1.2688 -0.0006 12 6 1.2087 -2.4286 0.1342 13 6 2.9728 -1.4094 -1.3120 14 6 3.1611 -1.2930 1.1578 15 1 3.2042 -0.4584 1.8419 16 6 3.9876 -2.3808 1.3443 17 7 3.9353 -3.3969 0.5111 18 14 5.1825 -2.4105 2.7798 19 1 4.4274 -2.3109 4.0546 20 1 5.9516 -3.6807 2.7575 21 1 6.1189 -1.2634 2.6683 22 1 -0.3633 -0.0164 -1.0275 23 1 -0.3634 -0.8817 0.5280 24 1 -0.3633 0.8981 0.4996 25 1 0.7590 2.5299 0.8907 26 1 0.7585 2.5301 -0.8893 27 1 1.7480 4.7640 -1.7309 28 1 4.8353 5.3197 1.1019 29 1 0.5117 -2.4110 -0.7037 30 1 1.7537 -3.3726 0.1333 31 1 0.6563 -2.3284 1.0684 32 1 3.6773 -0.5832 -1.4081 33 1 3.5175 -2.3537 -1.3127 34 1 2.2759 -1.3919 -2.1499 35 1 4.5170 -4.1620 0.6421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259576138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:30 Heat of formation + Delta-G solvation = 5.679449 kcal Electronic energy + Delta-G solvation = -19218.337306 eV Core-core repulsion = 16219.303092 eV Total energy + Delta-G solvation = -2999.034214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09318 -39.02292 -35.74950 -34.56189 -33.10205 -31.47284 -29.99648 -27.52248 -26.84906 -25.20650 -24.46935 -22.56854 -21.76492 -20.04051 -18.05626 -17.22679 -16.67810 -16.15070 -15.48557 -15.26741 -14.89119 -14.70500 -14.15363 -13.68223 -13.11399 -12.74970 -12.49035 -12.14497 -11.77547 -11.68696 -11.44007 -11.16566 -10.84125 -10.75401 -10.64293 -10.42253 -10.33344 -10.18291 -9.99623 -9.72916 -9.07501 -8.79421 -8.42006 -8.16571 -7.35039 -5.88066 -3.91172 1.66610 2.94860 3.05980 3.42589 3.45056 3.52792 3.68891 4.11811 4.36331 4.57523 4.99621 5.05467 5.38305 5.45851 5.58024 5.64935 5.73961 5.96909 6.02435 6.07530 6.21338 6.47223 6.64333 6.75263 6.81981 7.00957 7.28386 7.48723 7.62431 7.89519 7.98996 8.00542 8.27766 8.37588 8.73038 9.07376 9.36858 9.73357 11.14853 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.007344 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.565332 B = 3811.548196 C = 4598.824440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.604 5.604 3 C 0.507 3.493 4 O -0.501 6.501 5 C -0.066 4.066 6 C 0.017 3.983 7 C -0.083 4.083 8 O -0.212 6.212 9 C 0.161 3.839 10 N -0.453 5.453 11 C 0.293 3.707 12 C -0.139 4.139 13 C -0.145 4.145 14 C -0.483 4.483 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.277 1.277 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.212 0.788 28 H 0.246 0.754 29 H 0.016 0.984 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.002 0.998 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 12.335 -2.814 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.339 5.339 3 C 0.292 3.708 4 O -0.375 6.375 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.154 4.154 8 O -0.099 6.099 9 C -0.066 4.066 10 N -0.181 5.181 11 C 0.211 3.789 12 C -0.197 4.197 13 C -0.204 4.204 14 C -0.522 4.522 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.203 1.203 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.228 0.772 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.021 0.979 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.485 11.784 -2.335 13.652 hybrid contribution 0.389 0.374 0.196 0.574 sum -6.096 12.158 -2.139 13.768 Atomic orbital electron populations 1.21715 0.82540 1.02376 1.00336 1.48364 1.05249 1.07435 1.72829 1.19842 0.88293 0.84153 0.78519 1.90721 1.13266 1.86468 1.47046 1.20141 0.95880 0.90530 1.04113 1.21191 0.97689 0.97525 0.93948 1.24631 0.94291 0.93268 1.03187 1.84439 1.37947 1.47430 1.40041 1.28088 1.00585 0.91294 0.86642 1.70394 1.06098 1.14255 1.27375 1.18188 0.88834 0.77240 0.94610 1.22074 0.97760 1.02894 0.96982 1.22114 0.99424 1.04161 0.94699 1.21185 1.18786 1.02566 1.09670 0.92348 1.24774 0.96988 0.95548 0.96636 1.69770 1.39842 1.07488 1.36838 0.86560 0.81308 0.76948 0.82609 1.20566 1.21504 1.20276 0.94075 0.90689 0.92725 0.88124 0.88360 0.77184 0.73830 0.96545 0.88753 0.94761 0.93822 0.88865 0.97851 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 9.43 59.85 0.56 1.73 16 2 N -0.60 -12.91 2.82 -167.87 -0.47 -13.38 16 3 C 0.51 11.01 6.92 -10.99 -0.08 10.93 16 4 O -0.50 -13.32 12.67 5.56 0.07 -13.25 16 5 C -0.07 -1.03 4.81 -29.03 -0.14 -1.17 16 6 C 0.02 0.27 5.88 -82.81 -0.49 -0.21 16 7 C -0.08 -1.09 12.06 29.35 0.35 -0.74 16 8 O -0.21 -2.84 10.78 5.36 0.06 -2.79 16 9 C 0.16 2.22 13.23 52.09 0.69 2.91 16 10 N -0.45 -8.29 10.68 -11.18 -0.12 -8.41 16 11 C 0.29 7.34 0.76 -132.97 -0.10 7.24 16 12 C -0.14 -3.19 6.97 37.16 0.26 -2.94 16 13 C -0.15 -3.76 8.24 37.16 0.31 -3.45 16 14 C -0.48 -13.83 6.86 -34.44 -0.24 -14.06 16 15 H 0.06 1.79 7.15 -52.49 -0.38 1.41 16 16 C 0.06 1.71 5.15 -17.82 -0.09 1.61 16 17 N -0.90 -25.44 9.36 55.43 0.52 -24.92 16 18 Si 0.90 22.81 29.54 -169.99 -5.02 17.79 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.18 5.74 -51.93 -0.30 0.89 16 24 H 0.05 0.69 6.41 -51.93 -0.33 0.35 16 25 H 0.10 1.41 7.40 -51.93 -0.38 1.03 16 26 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 27 H 0.21 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.25 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.02 0.32 7.61 -51.93 -0.40 -0.08 16 30 H 0.09 2.40 6.19 -51.93 -0.32 2.08 16 31 H 0.03 0.74 7.12 -51.93 -0.37 0.38 16 32 H 0.04 1.20 6.57 -51.93 -0.34 0.86 16 33 H 0.09 2.58 5.95 -51.93 -0.31 2.27 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -35.49 286.41 -3.98 -39.47 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.37 Total: -0.68 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 1.04 Total: 1.86 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.07 Total: -46.71 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.13 Total: -16.04 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.49 -3.98 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.150 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds