Wall clock time and date at job start Mon Mar 30 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30251 * 125.62245 * 2 1 4 4 C 1.34478 * 108.70096 * 180.19047 * 3 2 1 5 5 C 1.50702 * 126.16563 * 179.82597 * 4 3 2 6 6 C 1.50701 * 109.46981 * 304.68815 * 5 4 3 7 7 O 1.21282 * 119.99805 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99836 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99763 * 179.97438 * 8 6 5 11 11 H 1.09000 * 109.47381 * 359.97438 * 10 8 6 12 12 C 1.53006 * 109.47249 * 239.99831 * 10 8 6 13 13 C 1.50699 * 109.46939 * 120.00179 * 10 8 6 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 10 8 15 15 C 1.37879 * 120.00161 * 179.97438 * 13 10 8 16 16 N 1.31509 * 119.99895 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00268 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46680 * 60.00301 * 17 15 13 19 19 H 1.48492 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 300.00817 * 17 15 13 21 21 C 1.34326 * 107.67239 * 359.55807 * 4 3 2 22 22 O 1.33975 * 125.61605 * 179.70479 * 2 1 3 23 23 H 1.08996 * 109.47413 * 180.31991 * 1 2 3 24 24 H 1.09001 * 109.46804 * 300.31731 * 1 2 3 25 25 H 1.08998 * 109.47075 * 60.31308 * 1 2 3 26 26 H 1.09004 * 109.47081 * 184.68912 * 5 4 3 27 27 H 1.09001 * 109.47464 * 64.68294 * 5 4 3 28 28 H 1.08993 * 109.47066 * 269.99701 * 9 8 6 29 29 H 1.09004 * 109.47229 * 30.00092 * 9 8 6 30 30 H 1.09000 * 109.47083 * 149.99916 * 9 8 6 31 31 H 1.09001 * 109.47002 * 60.00085 * 12 10 8 32 32 H 1.08993 * 109.46955 * 180.02562 * 12 10 8 33 33 H 1.09000 * 109.47050 * 300.00351 * 12 10 8 34 34 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 35 35 H 1.08000 * 126.45135 * 180.28493 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6674 -0.0042 5 6 4.7571 1.5725 -0.0094 6 6 4.6688 2.5196 -1.1783 7 8 3.7211 2.4646 -1.9331 8 7 5.6436 3.4270 -1.3856 9 6 6.7887 3.4929 -0.4741 10 6 5.5581 4.3472 -2.5222 11 1 4.6442 4.1490 -3.0823 12 6 6.7692 4.1444 -3.4350 13 6 5.5411 5.7674 -2.0185 14 1 5.5888 5.9648 -0.9577 15 6 5.4646 6.8149 -2.9118 16 7 5.4061 6.5746 -4.2034 17 14 5.4428 8.5754 -2.2874 18 1 6.6876 8.8451 -1.5239 19 1 5.3563 9.5082 -3.4394 20 1 4.2668 8.7720 -1.4021 21 6 3.5698 -0.6758 0.0030 22 8 2.2872 -1.0891 0.0056 23 1 -0.3634 -1.0276 0.0057 24 1 -0.3633 0.5188 0.8871 25 1 -0.3633 0.5090 -0.8928 26 1 5.6624 0.9717 -0.0961 27 1 4.7870 2.1430 0.9189 28 1 6.5675 4.1858 0.3376 29 1 6.9837 2.5023 -0.0633 30 1 7.6670 3.8397 -1.0186 31 1 6.7815 3.1171 -3.7993 32 1 6.7057 4.8294 -4.2804 33 1 7.6833 4.3423 -2.8752 34 1 5.3519 7.3115 -4.8319 35 1 4.4468 -1.3060 0.0064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259610067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:53 Heat of formation + Delta-G solvation = -11.411519 kcal Electronic energy + Delta-G solvation = -18528.841334 eV Core-core repulsion = 15529.066000 eV Total energy + Delta-G solvation = -2999.775334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.14725 -38.93905 -35.42578 -34.64365 -32.95244 -32.49324 -30.16902 -28.72955 -26.69882 -25.99728 -25.14837 -22.08428 -21.30022 -20.50338 -18.25914 -16.91124 -16.75050 -16.41903 -15.97627 -15.20315 -14.87650 -14.64517 -14.09538 -13.79780 -13.11927 -12.82325 -12.76569 -12.68469 -12.46090 -12.34846 -11.82042 -11.47494 -11.39474 -11.02512 -10.79162 -10.73367 -10.62616 -10.22294 -10.18845 -10.10938 -9.13580 -8.92141 -8.52126 -8.36366 -7.50071 -6.01928 -4.09574 1.59765 2.85116 2.89933 3.31489 3.36357 3.38088 3.50321 4.04452 4.14313 4.44605 4.89161 4.93672 5.22698 5.28459 5.34633 5.38092 5.47301 5.60132 5.71682 5.79499 6.02295 6.05816 6.11204 6.33562 6.44800 6.80429 6.86372 7.10776 7.50696 7.58765 7.77243 7.97773 8.07619 8.25934 8.60734 8.90070 9.16689 9.56828 11.03371 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.005119 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.431881 B = 5468.555397 C = 5830.207579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.180 3.820 3 N -0.451 5.451 4 C 0.019 3.981 5 C -0.063 4.063 6 C 0.507 3.493 7 O -0.535 6.535 8 N -0.597 5.597 9 C 0.087 3.913 10 C 0.259 3.741 11 H 0.062 0.938 12 C -0.146 4.146 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.087 4.087 22 O -0.209 6.209 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.010 0.990 32 H 0.093 0.907 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -13.359 9.684 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.027 4.027 3 N -0.181 5.181 4 C -0.102 4.102 5 C -0.103 4.103 6 C 0.292 3.708 7 O -0.412 6.412 8 N -0.330 5.330 9 C -0.057 4.057 10 C 0.159 3.841 11 H 0.080 0.920 12 C -0.205 4.205 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.157 4.157 22 O -0.096 6.096 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.227 -12.688 9.082 15.762 hybrid contribution 0.598 0.385 0.350 0.792 sum -1.630 -12.303 9.432 15.588 Atomic orbital electron populations 1.20189 0.81593 1.04153 1.05094 1.26330 0.96543 0.78645 1.01184 1.70368 1.01555 1.29732 1.16401 1.21153 0.92888 0.92026 1.04100 1.20081 0.93659 0.96445 1.00138 1.20042 0.83046 0.81683 0.86007 1.90679 1.32075 1.71023 1.47401 1.48212 1.20684 1.34562 1.29503 1.21553 0.90413 0.99796 0.93986 1.18901 0.96387 0.86564 0.82275 0.91989 1.22094 0.98068 0.98309 1.02020 1.21294 1.51286 0.90328 0.93298 0.92377 1.24893 0.94925 0.99199 0.94809 1.69871 1.49956 1.31906 1.01037 0.86554 0.78567 0.83999 0.78248 1.20264 1.21204 1.20261 1.24599 0.85006 0.95831 1.10230 1.84396 1.16822 1.37906 1.70476 0.89766 0.88751 0.88518 0.87977 0.87807 0.93338 0.93066 0.90882 0.97063 0.88850 0.95133 0.92699 0.77054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.51 10.51 36.00 0.38 -0.14 16 2 C 0.18 2.69 8.34 -12.95 -0.11 2.58 16 3 N -0.45 -8.39 10.70 -7.36 -0.08 -8.47 16 4 C 0.02 0.31 5.87 -82.81 -0.49 -0.17 16 5 C -0.06 -0.98 4.82 -29.03 -0.14 -1.12 16 6 C 0.51 10.99 7.67 -10.98 -0.08 10.90 16 7 O -0.53 -14.13 14.92 5.56 0.08 -14.04 16 8 N -0.60 -13.06 2.75 -175.26 -0.48 -13.54 16 9 C 0.09 1.44 9.48 59.85 0.57 2.01 16 10 C 0.26 6.81 2.64 -69.08 -0.18 6.63 16 11 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 12 C -0.15 -3.57 8.95 37.16 0.33 -3.23 16 13 C -0.52 -14.53 8.37 -34.44 -0.29 -14.81 16 14 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.09 -1.16 12.06 29.35 0.35 -0.80 16 22 O -0.21 -2.96 10.78 5.32 0.06 -2.90 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.10 1.18 7.37 -51.93 -0.38 0.80 16 27 H 0.10 1.46 8.11 -51.93 -0.42 1.04 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 30 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 33 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.21 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 298.02 15.07 4.49 4.49 Total: -1.00 -35.79 298.02 -4.64 -40.43 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.56 Total: -0.87 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 0.25 Total: 3.53 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.07 Total: -47.10 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.14 Total: -16.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.79 -4.64 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259610067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.016 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds