Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30254 * 125.62350 * 2 1 4 4 C 1.34473 * 108.70026 * 180.18585 * 3 2 1 5 5 C 1.50709 * 126.16480 * 179.82000 * 4 3 2 6 6 C 1.50696 * 109.47122 * 304.69316 * 5 4 3 7 7 O 1.21274 * 120.00115 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00065 * 359.97438 * 8 6 5 10 10 C 1.46506 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.08998 * 109.46566 * 359.97438 * 10 8 6 12 12 C 1.52997 * 109.47289 * 119.99453 * 10 8 6 13 13 C 1.50697 * 109.47015 * 239.99910 * 10 8 6 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 8 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47204 * 119.99883 * 17 15 13 20 20 H 1.48496 * 109.47191 * 240.00215 * 17 15 13 21 21 C 1.34326 * 107.66964 * 359.56315 * 4 3 2 22 22 O 1.33970 * 125.61601 * 179.69822 * 2 1 3 23 23 H 1.08990 * 109.47569 * 180.32074 * 1 2 3 24 24 H 1.09000 * 109.47012 * 300.32704 * 1 2 3 25 25 H 1.09001 * 109.46820 * 60.31529 * 1 2 3 26 26 H 1.09002 * 109.46957 * 184.69381 * 5 4 3 27 27 H 1.09000 * 109.46736 * 64.69338 * 5 4 3 28 28 H 1.09000 * 109.46842 * 270.00180 * 9 8 6 29 29 H 1.08994 * 109.47173 * 30.00714 * 9 8 6 30 30 H 1.08998 * 109.46730 * 150.00747 * 9 8 6 31 31 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 32 32 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 33 33 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 34 34 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 35 35 H 1.08010 * 126.44508 * 180.28566 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6673 -0.0041 5 6 4.7572 1.5725 -0.0094 6 6 4.6690 2.5195 -1.1784 7 8 3.7213 2.4645 -1.9331 8 7 5.6438 3.4268 -1.3856 9 6 6.7889 3.4928 -0.4741 10 6 5.5579 4.3478 -2.5217 11 1 4.6436 4.1500 -3.0812 12 6 5.5410 5.7894 -2.0094 13 6 6.7501 4.1483 -3.4214 14 1 7.4974 3.4096 -3.1718 15 6 6.8870 4.9087 -4.5633 16 7 5.9767 5.8078 -4.8676 17 14 8.3653 4.6619 -5.6783 18 1 9.2366 3.5984 -5.1169 19 1 7.9034 4.2609 -7.0314 20 1 9.1316 5.9303 -5.7725 21 6 3.5697 -0.6758 0.0030 22 8 2.2872 -1.0891 0.0057 23 1 -0.3634 -1.0275 0.0058 24 1 -0.3633 0.5189 0.8870 25 1 -0.3633 0.5089 -0.8928 26 1 5.6625 0.9717 -0.0961 27 1 4.7871 2.1429 0.9189 28 1 6.5676 4.1857 0.3376 29 1 6.9838 2.5022 -0.0634 30 1 7.6671 3.8396 -1.0187 31 1 5.4775 6.4746 -2.8547 32 1 6.4554 5.9869 -1.4500 33 1 4.6785 5.9337 -1.3586 34 1 6.0728 6.3426 -5.6711 35 1 4.4469 -1.3060 0.0065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259610069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -39.776370 kcal Electronic energy + Delta-G solvation = -18524.138589 eV Core-core repulsion = 15523.133263 eV Total energy + Delta-G solvation = -3001.005326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.23470 -40.61989 -37.17239 -35.92021 -34.82212 -33.67188 -31.79121 -30.13679 -27.82388 -27.43613 -27.27958 -23.61465 -22.48574 -21.94129 -19.92008 -18.52969 -18.03445 -17.89442 -17.49798 -16.98446 -16.38358 -16.11723 -15.45138 -14.95347 -14.74726 -14.20901 -13.97217 -13.89007 -13.78529 -13.48248 -13.35057 -13.07682 -12.99973 -12.79443 -12.67777 -12.61610 -12.20023 -12.09187 -11.93781 -11.38167 -11.16962 -10.66417 -10.46892 -9.63675 -9.27003 -8.14090 -6.31112 0.54949 1.41072 1.42410 1.54099 1.68226 1.89117 1.92747 2.36074 2.57806 3.13463 3.13855 3.79021 3.82331 4.12252 4.37741 4.46946 4.58757 4.63487 4.64644 4.75570 4.79053 4.84759 4.89646 5.00157 5.06980 5.07652 5.11178 5.39256 5.48803 5.62251 5.69101 6.06254 6.17317 6.78211 6.87124 6.89735 7.34688 7.55321 8.90792 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.033060 B = 0.004901 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.746058 B = 5711.309693 C = 5758.202776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.174 3.826 3 N -0.509 5.509 4 C -0.027 4.027 5 C -0.046 4.046 6 C 0.494 3.506 7 O -0.596 6.596 8 N -0.604 5.604 9 C 0.078 3.922 10 C 0.262 3.738 11 H 0.001 0.999 12 C -0.130 4.130 13 C -0.535 4.535 14 H 0.065 0.935 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.065 4.065 22 O -0.210 6.210 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -12.384 13.662 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.034 4.034 3 N -0.239 5.239 4 C -0.146 4.146 5 C -0.085 4.085 6 C 0.282 3.718 7 O -0.477 6.477 8 N -0.335 5.335 9 C -0.064 4.064 10 C 0.159 3.841 11 H 0.019 0.981 12 C -0.189 4.189 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.135 4.135 22 O -0.097 6.097 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.111 0.889 26 H 0.164 0.836 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -2.529 -11.680 13.155 17.773 hybrid contribution 0.794 -0.160 -1.088 1.356 sum -1.735 -11.840 12.067 16.995 Atomic orbital electron populations 1.20431 0.78656 1.06298 1.05536 1.27187 0.98094 0.78181 0.99926 1.70296 1.03132 1.31881 1.18570 1.21478 0.92696 0.93630 1.06802 1.20074 0.95396 0.95650 0.97423 1.21182 0.81814 0.81867 0.86894 1.90642 1.34857 1.72350 1.49882 1.48239 1.22154 1.34331 1.28825 1.21900 0.88422 1.03424 0.92698 1.18479 0.95998 0.86162 0.83438 0.98091 1.21853 0.97915 0.99275 0.99843 1.21632 1.07682 1.20423 1.07645 0.91673 1.25807 0.99383 0.94661 0.98968 1.70053 1.35969 1.23777 1.26214 0.85356 0.78948 0.78375 0.78022 1.18496 1.21343 1.19990 1.25424 0.85769 0.95395 1.06872 1.84423 1.17294 1.37766 1.70249 0.86838 0.87207 0.88920 0.83625 0.85688 0.91898 0.88353 0.91276 0.91591 0.93240 0.96641 0.92725 0.72524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.94 10.51 71.24 0.75 -0.19 16 2 C 0.17 5.02 8.34 88.34 0.74 5.76 16 3 N -0.51 -18.69 10.70 -291.97 -3.12 -21.81 16 4 C -0.03 -0.85 5.87 41.26 0.24 -0.61 16 5 C -0.05 -1.32 4.82 29.10 0.14 -1.18 16 6 C 0.49 21.44 7.67 87.66 0.67 22.12 16 7 O -0.60 -32.94 14.92 -3.01 -0.04 -32.98 16 8 N -0.60 -26.21 2.75 -826.82 -2.28 -28.49 16 9 C 0.08 2.36 9.24 127.77 1.18 3.54 16 10 C 0.26 14.18 2.63 44.24 0.12 14.29 16 11 H 0.00 0.07 6.90 -2.39 -0.02 0.06 16 12 C -0.13 -6.58 8.97 71.98 0.65 -5.93 16 13 C -0.54 -29.61 7.99 25.60 0.20 -29.40 16 14 H 0.07 3.44 7.33 -2.91 -0.02 3.42 16 15 C 0.01 0.61 5.30 84.66 0.45 1.06 16 16 N -0.92 -54.60 11.32 21.45 0.24 -54.36 16 17 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C -0.06 -1.59 12.06 66.93 0.81 -0.78 16 22 O -0.21 -5.61 10.78 -3.71 -0.04 -5.65 16 23 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.15 2.85 7.37 -2.39 -0.02 2.83 16 27 H 0.13 2.99 8.11 -2.39 -0.02 2.97 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 30 H 0.07 2.28 7.02 -2.39 -0.02 2.27 16 31 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 32 H 0.05 2.23 7.67 -2.39 -0.02 2.22 16 33 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.26 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -82.91 298.71 3.82 -79.09 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.09 Total: 10.00 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.94 Total: 8.68 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -5.16 Total: -104.66 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.08 Total: -38.63 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -82.91 3.82 -79.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259610069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.312 kcal (2) G-P(sol) polarization free energy of solvation -82.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds