Wall clock time and date at job start Mon Mar 30 2020 03:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35320 * 126.66234 * 2 1 4 4 C 1.42271 * 103.91828 * 179.97438 * 3 2 1 5 5 C 1.48327 * 126.93481 * 179.97438 * 4 3 2 6 6 O 1.21502 * 120.00392 * 5.58223 * 5 4 3 7 7 N 1.34777 * 119.99891 * 185.31004 * 5 4 3 8 8 C 1.46501 * 119.99958 * 355.26008 * 7 5 4 9 9 C 1.46500 * 120.00154 * 175.26086 * 7 5 4 10 10 C 1.53001 * 109.47121 * 65.66634 * 9 7 5 11 11 C 1.53001 * 109.47541 * 185.66342 * 9 7 5 12 12 C 1.50702 * 109.47247 * 305.66635 * 9 7 5 13 13 H 1.07995 * 119.99937 * 359.72172 * 12 9 7 14 14 C 1.37880 * 119.99826 * 179.72234 * 12 9 7 15 15 N 1.31506 * 120.00348 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99559 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47117 * 60.00143 * 16 14 12 18 18 H 1.48505 * 109.46854 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46913 * 299.99934 * 16 14 12 20 20 N 1.30983 * 106.12281 * 0.25454 * 4 3 2 21 21 O 1.20902 * 111.44302 * 359.54219 * 20 4 3 22 22 H 1.08997 * 109.47235 * 90.00822 * 1 2 3 23 23 H 1.09007 * 109.47085 * 210.00579 * 1 2 3 24 24 H 1.09003 * 109.47384 * 330.00429 * 1 2 3 25 25 H 1.08000 * 128.03898 * 359.93318 * 3 2 1 26 26 H 1.08998 * 109.46924 * 55.90409 * 8 7 5 27 27 H 1.09002 * 109.46755 * 175.89986 * 8 7 5 28 28 H 1.09000 * 109.47238 * 295.89799 * 8 7 5 29 29 H 1.08998 * 109.47162 * 60.00307 * 10 9 7 30 30 H 1.09002 * 109.47460 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.47400 * 299.99918 * 10 9 7 32 32 H 1.09003 * 109.46871 * 60.00100 * 11 9 7 33 33 H 1.09000 * 109.47620 * 179.97438 * 11 9 7 34 34 H 1.08997 * 109.47136 * 300.00829 * 11 9 7 35 35 H 0.96999 * 120.00570 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5355 0.0006 5 6 4.9074 1.2843 0.0003 6 8 4.9032 2.4950 0.1019 7 7 6.0759 0.6212 -0.1070 8 6 6.0884 -0.8437 -0.1188 9 6 7.3335 1.3653 -0.2119 10 6 7.5857 2.1267 1.0910 11 6 8.4844 0.3889 -0.4629 12 6 7.2452 2.3424 -1.3557 13 1 6.3442 2.4000 -1.9484 14 6 8.3147 3.1630 -1.6455 15 7 9.4120 3.0926 -0.9242 16 14 8.2048 4.3747 -3.0630 17 1 7.0838 5.3182 -2.8219 18 1 9.4775 5.1332 -3.1655 19 1 7.9663 3.6356 -4.3287 20 7 3.4760 -0.7656 -0.0047 21 8 2.3073 -1.0749 0.0007 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5140 24 1 -0.3634 0.8900 0.5138 25 1 2.0300 2.1272 -0.0010 26 1 5.4432 -1.2061 -0.9192 27 1 7.1061 -1.1970 -0.2845 28 1 5.7251 -1.2179 0.8383 29 1 7.6497 1.4199 1.9184 30 1 8.5212 2.6807 1.0129 31 1 6.7658 2.8223 1.2700 32 1 8.3048 -0.1535 -1.3911 33 1 9.4201 0.9426 -0.5413 34 1 8.5483 -0.3179 0.3644 35 1 10.1645 3.6695 -1.1283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259624326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:48 Heat of formation + Delta-G solvation = 25.280527 kcal Electronic energy + Delta-G solvation = -19247.807952 eV Core-core repulsion = 16249.623705 eV Total energy + Delta-G solvation = -2998.184247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.08026 -40.87893 -37.63800 -35.43838 -34.90325 -34.07038 -31.95407 -28.88371 -28.63952 -27.39380 -26.50196 -25.75212 -23.61226 -21.69832 -19.97461 -18.87655 -18.34820 -18.28892 -17.44092 -17.18258 -16.10149 -15.99077 -15.24643 -14.79345 -14.70227 -14.46065 -13.97452 -13.91016 -13.66528 -13.43574 -13.33620 -13.16802 -12.82970 -12.78194 -12.56819 -12.34988 -12.23817 -11.89876 -11.84410 -11.42770 -11.23776 -10.77506 -10.39848 -10.33574 -9.37984 -8.09036 -6.20246 0.18451 0.74681 1.36396 1.39454 1.46539 1.98815 2.20370 2.29166 2.43658 2.98594 3.14967 3.58899 3.99498 4.13745 4.35399 4.38396 4.56049 4.65683 4.78136 4.80318 4.82226 4.84762 4.87144 4.92259 4.96681 5.16637 5.27469 5.42665 5.58292 5.64387 5.87507 6.11201 6.25650 6.63447 6.81435 7.06579 7.27585 7.48939 8.91395 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.030002 B = 0.006609 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.040417 B = 4235.672027 C = 4735.567033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.014 4.014 3 C -0.209 4.209 4 C -0.046 4.046 5 C 0.573 3.427 6 O -0.553 6.553 7 N -0.590 5.590 8 C 0.078 3.922 9 C 0.283 3.717 10 C -0.134 4.134 11 C -0.129 4.129 12 C -0.511 4.511 13 H 0.029 0.971 14 C 0.026 3.974 15 N -0.903 5.903 16 Si 0.949 3.051 17 H -0.288 1.288 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.341 5.341 21 O 0.123 5.877 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.183 0.817 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 -9.226 1.953 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.232 4.232 4 C -0.203 4.203 5 C 0.359 3.641 6 O -0.431 6.431 7 N -0.322 5.322 8 C -0.064 4.064 9 C 0.201 3.799 10 C -0.193 4.193 11 C -0.187 4.187 12 C -0.550 4.550 13 H 0.048 0.952 14 C -0.173 4.173 15 N -0.543 5.543 16 Si 0.776 3.224 17 H -0.214 1.214 18 H -0.197 1.197 19 H -0.199 1.199 20 N -0.043 5.043 21 O 0.047 5.953 22 H 0.126 0.874 23 H 0.124 0.876 24 H 0.128 0.872 25 H 0.200 0.800 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.803 -9.504 2.007 16.879 hybrid contribution -0.014 1.699 -0.691 1.834 sum -13.817 -7.805 1.316 15.924 Atomic orbital electron populations 1.20654 0.79394 1.06604 1.05920 1.25232 0.98091 0.83797 1.00568 1.22635 0.89184 1.02709 1.08674 1.23702 0.97151 0.90828 1.08637 1.17357 0.82495 0.86269 0.77996 1.90721 1.86822 1.14464 1.51074 1.48338 1.06763 1.07814 1.69249 1.22012 1.03965 0.78767 1.01678 1.18255 0.79058 0.89294 0.93335 1.21957 1.02045 0.99367 0.95913 1.21924 1.00644 0.97517 0.98591 1.21210 0.99270 1.20564 1.13981 0.95217 1.25366 0.95058 0.98132 0.98783 1.69841 1.04483 1.39923 1.40016 0.85759 0.77164 0.79344 0.80174 1.21422 1.19750 1.19861 1.74336 0.97688 1.15031 1.17206 1.84730 1.11020 1.34118 1.65413 0.87424 0.87555 0.87214 0.79979 0.92015 0.88651 0.92089 0.95756 0.90590 0.95846 0.94141 0.90272 0.93523 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.44 71.24 0.74 0.13 16 2 C -0.01 -0.29 7.47 25.01 0.19 -0.10 16 3 C -0.21 -6.21 10.93 22.60 0.25 -5.96 16 4 C -0.05 -1.74 6.92 42.96 0.30 -1.45 16 5 C 0.57 27.52 6.91 86.93 0.60 28.12 16 6 O -0.55 -30.68 14.09 -3.72 -0.05 -30.73 16 7 N -0.59 -27.55 2.82 -806.24 -2.27 -29.82 16 8 C 0.08 2.88 8.70 127.77 1.11 3.99 16 9 C 0.28 14.63 0.76 2.86 0.00 14.63 16 10 C -0.13 -7.09 8.26 71.98 0.59 -6.50 16 11 C -0.13 -5.96 6.86 71.98 0.49 -5.46 16 12 C -0.51 -29.76 6.94 25.60 0.18 -29.58 16 13 H 0.03 1.84 7.20 -2.91 -0.02 1.82 16 14 C 0.03 1.46 5.15 84.66 0.44 1.90 16 15 N -0.90 -50.58 9.35 21.45 0.20 -50.38 16 16 Si 0.95 45.96 29.54 68.60 2.03 47.98 16 17 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 20 N -0.34 -11.32 8.87 -49.52 -0.44 -11.76 16 21 O 0.12 3.21 11.18 71.91 0.80 4.01 16 22 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 24 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 26 H 0.06 2.20 6.85 -2.39 -0.02 2.18 16 27 H 0.10 3.26 4.95 -2.39 -0.01 3.25 16 28 H 0.06 2.07 7.73 -2.39 -0.02 2.05 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 4.24 6.05 -2.39 -0.01 4.23 16 31 H 0.02 1.30 6.42 -2.39 -0.02 1.28 16 32 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 33 H 0.08 4.02 6.09 -2.39 -0.01 4.00 16 34 H 0.05 1.86 7.16 -2.39 -0.02 1.84 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -71.21 285.43 6.26 -64.95 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.10 Total: 6.03 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.89 Total: -0.28 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -2.51 Total: -91.96 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: 0.75 Total: -26.72 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -71.21 6.26 -64.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.228 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds